LoadPackages.R 2.15 KB
Newer Older
svolant's avatar
svolant committed
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
if (!require("Rcpp")){
  install.packages("Rcpp")
}

if(!require(shinydashboard)){
  install.packages('shinydashboard')
  library(shinydashboard)
}

if(!require(rjson)){
  install.packages('rjson')
}

if(!require(devtools)){
  install.packages('devtools')
}

#library(plotly)

if (!require(psych)) {
  install.packages('psych')
  library(psych)
}

if (!require(ggplot2)) {
  install.packages('ggplot2')
  library(ggplot2)
}

if (!require(vegan)) {
  install.packages('vegan')
  library(vegan)
}

if (!require(dendextend)) {
  install.packages('dendextend')
  library(dendextend)
}

if (!require(circlize)) {
  install.packages('circlize')
  library(circlize)
}

if (!require(d3heatmap)) {
  install.packages('d3heatmap')
  library(d3heatmap)
}

if (!require(biom)) {
  install.packages('biom')
  library(biom)
}

if (!require(devtools)) {
  install.packages('devtools')
  library(devtools)
}

if (!require(scatterD3)) {
  install.packages('scatterD3')
  library(scatterD3)
}

if (!require(rNVD3)) {
  library(devtools)
  install_github('rNVD3', 'ramnathv')
  library(rNVD3)
}

if (!require(genefilter)) {
  source("https://bioconductor.org/biocLite.R")
  biocLite("genefilter")
  library(genefilter)
}

if (!require(googleVis)) {
  install.packages('googleVis')
  suppressPackageStartupMessages(library(googleVis))
}

if (!require(shinyjs)) {
  install.packages('shinyjs')
  library(shinyjs)
}

if(!require(plotly)){
  install.packages('plotly')
  library(plotly)
}

if(!require(d3vennR)){
  install_github("timelyportfolio/d3vennR")
  library(d3vennR)
}

if (!require(psych)) {
  install.packages('psych')
  library(psych)
}

if (!require(DT)) {
  install.packages('DT')
  library(DT)
}

if (!require(RColorBrewer)) {
  install.packages('RColorBrewer')
  library(RColorBrewer)
}

if (!require(gplots)) {
  install.packages('gplots')
  library(gplots)
}

if (!require(DESeq2)) {
  source("https://bioconductor.org/biocLite.R")
  biocLite("DESeq2")
  library(DESeq2)
}

if (!require(ade4)) {
  install.packages('ade4')
  library(ade4)
}

if (!require(scales)) {
  install.packages('scales')
  library(scales)
}

# Allow to upload 50M files
options(shiny.maxRequestSize=50*1024^2) 
source("internal.R")