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shaman
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Amine GHOZLANE
shaman
Commits
0104286c
Commit
0104286c
authored
Aug 19, 2019
by
Amine GHOZLANE
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Update documentation and autodev process
parent
170a3c68
Pipeline
#13867
passed with stage
in 56 minutes and 37 seconds
Changes
3
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1
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3 changed files
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4 additions
and
20 deletions
+4
-20
.gitlab-ci.yml
.gitlab-ci.yml
+2
-15
Dockerfile
Dockerfile
+2
-5
www/Userguide.pdf
www/Userguide.pdf
+0
-0
No files found.
.gitlab-ci.yml
View file @
0104286c
...
...
@@ -14,19 +14,6 @@ build_master:
variables
:
CI_DEBUG_TRACE
:
"
false"
script
:
-
docker login -u "$CI_REGISTRY_USER" -p "$CI_REGISTRY_PASSWORD" $CI_REGISTRY
-
docker login -u "$CI_REGISTRY_USER" -p "$CI_REGISTRY_PASSWORD" $CI_REGISTRY
-
docker build
--build-arg CI_COMMIT_REF_SLUG
--build-arg CI_COMMIT_SHA
--build-arg CI_COMMIT_SHORT_SHA
--cache-from "$CI_REGISTRY_IMAGE:latest"
--cache-from "$CI_REGISTRY_IMAGE:$CI_COMMIT_REF_SLUG"
--tag "$CI_REGISTRY_IMAGE:$CI_COMMIT_REF_SLUG"
--tag "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHA"
--tag "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHORT_SHA"
.
-
docker push "$CI_REGISTRY_IMAGE:$CI_COMMIT_REF_SLUG"
-
docker push "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHA"
-
docker login -u "$DOCKER_USER" -p "$DOCKER_PASS"
-
docker push -t aghozlane/shaman
\ No newline at end of file
-
docker build -t aghozlane/shaman .
#- docker push -t aghozlane/shaman
\ No newline at end of file
Dockerfile
View file @
0104286c
...
...
@@ -45,13 +45,10 @@ RUN R -e """install.packages('packrat', repos='http://cran.univ-paris1.fr/');lib
COPY
docker_inst/shiny-server.conf /etc/shiny-server/shiny-server.conf
COPY
docker_inst/.Rprofile /srv/shiny-server/
COPY
. /srv/shiny-server/
RUN
git clone https://github.com/pworinger/shaman.git /srv/shiny-server/shaman
&&
\
#git clone https://github.com/aghozlane/shaman.git /srv/shiny-server/shaman &&
\
git clone https://github.com/pierreLec/KronaRShy.git /srv/shiny-server/kronarshy
&&
\
RUN
git clone https://github.com/pierreLec/KronaRShy.git /srv/shiny-server/kronarshy
&&
\
git clone https://github.com/aghozlane/shaman_bioblend.git /usr/bin/shaman_bioblend
&&
\
mv
/srv/shiny-server/shaman/
*
/srv/shiny-server/
&&
\
rm
-rf
/srv/shiny-server/shaman
&&
\
chown
-R
shiny.shiny /srv/shiny-server/
&&
\
chown
-R
shiny.shiny /opt/packman/
&&
\
rm
/opt/shaman_package_201908.tar.gz
&&
\
...
...
www/Userguide.pdf
View file @
0104286c
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