Commit 0104286c authored by Amine  GHOZLANE's avatar Amine GHOZLANE
Browse files

Update documentation and autodev process

parent 170a3c68
Pipeline #13867 passed with stage
in 56 minutes and 37 seconds
......@@ -14,19 +14,6 @@ build_master:
variables:
CI_DEBUG_TRACE: "false"
script:
- docker login -u "$CI_REGISTRY_USER" -p "$CI_REGISTRY_PASSWORD" $CI_REGISTRY
- docker login -u "$CI_REGISTRY_USER" -p "$CI_REGISTRY_PASSWORD" $CI_REGISTRY
- docker build
--build-arg CI_COMMIT_REF_SLUG
--build-arg CI_COMMIT_SHA
--build-arg CI_COMMIT_SHORT_SHA
--cache-from "$CI_REGISTRY_IMAGE:latest"
--cache-from "$CI_REGISTRY_IMAGE:$CI_COMMIT_REF_SLUG"
--tag "$CI_REGISTRY_IMAGE:$CI_COMMIT_REF_SLUG"
--tag "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHA"
--tag "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHORT_SHA"
.
- docker push "$CI_REGISTRY_IMAGE:$CI_COMMIT_REF_SLUG"
- docker push "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHA"
- docker login -u "$DOCKER_USER" -p "$DOCKER_PASS"
- docker push -t aghozlane/shaman
\ No newline at end of file
- docker build -t aghozlane/shaman .
#- docker push -t aghozlane/shaman
\ No newline at end of file
......@@ -45,13 +45,10 @@ RUN R -e """install.packages('packrat', repos='http://cran.univ-paris1.fr/');lib
COPY docker_inst/shiny-server.conf /etc/shiny-server/shiny-server.conf
COPY docker_inst/.Rprofile /srv/shiny-server/
COPY . /srv/shiny-server/
RUN git clone https://github.com/pworinger/shaman.git /srv/shiny-server/shaman && \
#git clone https://github.com/aghozlane/shaman.git /srv/shiny-server/shaman && \
git clone https://github.com/pierreLec/KronaRShy.git /srv/shiny-server/kronarshy && \
RUN git clone https://github.com/pierreLec/KronaRShy.git /srv/shiny-server/kronarshy && \
git clone https://github.com/aghozlane/shaman_bioblend.git /usr/bin/shaman_bioblend && \
mv /srv/shiny-server/shaman/* /srv/shiny-server/ && \
rm -rf /srv/shiny-server/shaman && \
chown -R shiny.shiny /srv/shiny-server/ && \
chown -R shiny.shiny /opt/packman/ && \
rm /opt/shaman_package_201908.tar.gz && \
......
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