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Amine GHOZLANE
shaman
Commits
511354b5
Commit
511354b5
authored
Mar 29, 2016
by
Amine GHOZLANE
Browse files
Debug heatmap color when log2foldchange data considered to export
parent
b50678ec
Changes
3
Hide whitespace changes
Inline
Side-by-side
internal.R
View file @
511354b5
...
...
@@ -1509,8 +1509,9 @@ CheckCountsTable <- function(counts)
if
(
input
$
SensPlotVisu
==
"Horizontal"
)
log2FC
=
t
(
as.matrix
(
log2FC
))
if
(
!
export
)
res
=
d3heatmap
(
log2FC
,
dendrogram
=
"row"
,
Rowv
=
TRUE
,
Colv
=
NA
,
na.rm
=
TRUE
,
width
=
input
$
widthVisu
,
height
=
input
$
heightVisu
,
show_grid
=
FALSE
,
colors
=
col
,
scale
=
input
$
scaleHeatmap
,
cexRow
=
input
$
LabelSizeHeatmap
,
cexCol
=
input
$
LabelSizeHeatmap
,
offsetCol
=
input
$
LabelColOffsetHeatmap
,
offsetRow
=
input
$
LabelRowOffsetHeatmap
)
if
(
export
)
res
=
heatmap.2
(
log2FC
,
dendrogram
=
"row"
,
Rowv
=
TRUE
,
Colv
=
NA
,
na.rm
=
TRUE
,
width
=
input
$
widthVisu
,
height
=
input
$
heightVisu
,
show_grid
=
FALSE
,
colors
=
col
,
scale
=
input
$
scaleHeatmap
,
cexRow
=
input
$
LabelSizeHeatmap
,
cexCol
=
input
$
LabelSizeHeatmap
,
offsetCol
=
input
$
LabelColOffsetHeatmap
,
offsetRow
=
input
$
LabelRowOffsetHeatmap
)
}
if
(
export
)
res
=
heatmap.2
(
log2FC
,
dendrogram
=
"row"
,
Rowv
=
TRUE
,
Colv
=
NA
,
na.rm
=
TRUE
,
width
=
input
$
widthVisu
,
height
=
input
$
heightVisu
,
density.info
=
"none"
,
show_grid
=
FALSE
,
trace
=
"none"
,
col
=
col
,
scale
=
input
$
scaleHeatmap
,
cexRow
=
input
$
LabelSizeHeatmap
,
cexCol
=
input
$
LabelSizeHeatmap
,
offsetCol
=
input
$
LabelColOffsetHeatmap
,
offsetRow
=
input
$
LabelRowOffsetHeatmap
)
#if(export) plot = heatmap.2(counts_tmp_combined, dendrogram = "none", Rowv = NA, Colv = NA, na.rm = TRUE, density.info="none", margins=c(12,8),trace="none",srtCol=45,col = col, scale = input$scaleHeatmap,cexRow = 0.6)
}
return
(
res
)
}
...
...
server.R
View file @
511354b5
...
...
@@ -76,7 +76,7 @@ if (!require(genefilter)) {
if
(
!
require
(
googleVis
))
{
install.packages
(
'googleVis'
)
library
(
googleVis
)
suppressPackageStartupMessages
(
library
(
googleVis
)
)
}
library
(
shinyjs
)
...
...
ui.R
View file @
511354b5
...
...
@@ -73,7 +73,7 @@ if (!require(genefilter)) {
if
(
!
require
(
googleVis
))
{
install.packages
(
'googleVis'
)
library
(
googleVis
)
suppressPackageStartupMessages
(
library
(
googleVis
)
)
}
sidebar
<-
dashboardSidebar
(
...
...
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