If you use SHAMAN for your project, please cite our first application of SHAMAN in Quereda et al. 2016.
Publication using SHAMAN :
- Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome. Dickson LB, Ghozlane A, Volant S, Bouchier C, Ma L, Vega-Rúa A, Dusfour I, Jiolle D, Paupy C, Mayanja MN, Kohl A, Lutwama JJ, Duong V, Lambrechts L; Parasit Vectors 2018 [PUBMED](https://www.ncbi.nlm.nih.gov/pubmed/29587819").
- Characteristics of Fecal Microbiota in Pediatric Crohn’s Disease and Their Dynamic Changes During Infliximab Therapy.", href="https://www.ncbi.nlm.nih.gov/pubmed/29194468"), "Wang Y, Gao X, Ghozlane A, Hu H, Li X, Xiao Y, Li D, Yu G, Zhang T; Journal of Crohn's & colitis 2017",style = "font-family: 'times'; font-si16pt"),
- Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector.", href="https://www.ncbi.nlm.nih.gov/pubmed/28835919"), "Dickson LB, Jiolle D, Minard G, Moltini-Conclois I, Volant S, Ghozlane A, Bouchier C, Ayala D, Paupy C, Moro CV, Lambrechts L; Science Advances 2017",style = "font-family: 'times'; font-si16pt"),
- A bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection.", href="http://www.ncbi.nlm.nih.gov/pubmed/27140611"), "Quereda JJ, Dussurget O, Nahori MA, Ghozlane A, Volant S, Dillies MA, Regnault B, Kennedy S, Mondot S, Villoing B, Cossart P, Pizarro-Cerda J.; PNAS 2016",style = "font-family: 'times'; font-si16pt"),
- If you have any comments, questions or suggestions, or need help to use SHAMAN, please contact us at", a("shaman@pasteur.fr", href="mailto:shaman@pasteur.fr"),"and please provide us with enough information that we can recreate the problem. Useful things to include are:", style = "font-family: 'times'; font-si16pt;"),
Input data (or examples, a small test case sufficient to recreate the problem)"),
Information about which system your are using: web version, docker or R installation")
No papers about SHAMAN have been published yet, but a manuscript is in preparation.
Publication using SHAMAN :
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@@ -54,13 +67,11 @@ If you have any comments, questions or suggestions, or need help to use SHAMAN,