Commit 7936ac9d authored by svolant's avatar svolant
Browse files

Ajout de la normalisation par groupe

parents 8381410f 075362b4
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...@@ -99,9 +99,29 @@ body <- dashboardBody( ...@@ -99,9 +99,29 @@ body <- dashboardBody(
"- Diversity",br(),img(src="tutorial/tutorial_diversity.png",width = "100%",style="max-width: 900px"),hr(), "- Diversity",br(),img(src="tutorial/tutorial_diversity.png",width = "100%",style="max-width: 900px"),hr(),
"- Rarefaction",br(),img(src="tutorial/tutorial_rarefaction.png",width = "100%",style="max-width: 900px"))), "- Rarefaction",br(),img(src="tutorial/tutorial_rarefaction.png",width = "100%",style="max-width: 900px"))),
tabPanel("6-Other datasets available", tabPanel("6-Other datasets available",
p("You can test SHAMAN with the dataset with two other datasets : "), p("You can test SHAMAN with two other datasets : "),
p("- Bacteriocin impact on mice microbiota from ", a("[Quereda et al. 2016]",href="http://www.ncbi.nlm.nih.gov/pubmed/27140611"), ":", a("here",target="_blank",href="listeria.zip"), br(), p("- Bacteriocin impact on mice microbiota from ", a("[Quereda et al. 2016]",href="http://www.ncbi.nlm.nih.gov/pubmed/27140611"), ":", a("here",target="_blank",href="listeria.zip"), br(),br(),
"- MOCK communities from ", a("[The NIH HMP Working Group, 2009]",href="http://www.ncbi.nlm.nih.gov/pubmed/19819907"), ":", a("here",target="_blank",href="mock.zip")))))
"The project is divided into three group : WT, Delta : Bacteriocin KO, Delta-complemented: Bacteriocin KO + complementation.", br(),
"Three time points are considered :", br(),
"- T0 : merged counts from -48H and -24H", br(),
"- T2 : 6H after listeria infection", br(),
"- T3 : 24H after listeria infection", br(),
img(src="listeria.png",width = "100%",style="max-width: 500px"),br(),br(),
"Analysis with SHAMAN:", br(),
"Set variables: condition, time, mice", br(),
"Set interactions:",
"1. condition:mice", br(),
"2. condition:time", br(),hr(),
"- MOCK communities from ", a("[The NIH HMP Working Group, 2009]",href="http://www.ncbi.nlm.nih.gov/pubmed/19819907"), ":", a("here",target="_blank",href="mock.zip"),br(),
"Mock communities are composed of 21 species mixed in even or staggered proportions :", br(),br(),
img(src="mock.png",width = "100%",style="max-width: 600px"),br(),br(),
"Analysis with SHAMAN: ",br(),
"Set variables : Community", br(),
"no interaction"))
))
), ),
tabItem(tabName = "Upload", tabItem(tabName = "Upload",
......
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