perspective plots

b6bb7919 · Stevenn Volant · f936492d · b6bb7919 · b6bb7919 · b6bb7919
Commit b6bb7919 authored Jan 28, 2016 by Stevenn Volant
--- a/server.R
+++ b/server.R
@@ -327,7 +327,7 @@ shinyServer(function(input, output,session) {
                 icon = icon("bar-chart-o"), tabName = "AnaStat"
        ),
        menuItem("Visualization",icon = icon("area-chart"), tabName = "Visu"),
-        menuItem("Krona plot", icon = icon("pie-chart"), tabName = "Krona")
+        menuItem("Perspective plots", icon = icon("pie-chart"), tabName = "Krona")

      )
     }

--- a/server.R.orig
+++ b/server.R.orig
--- a/ui.R
+++ b/ui.R
@@ -446,7 +446,7 @@ body <- dashboardBody(
                         uiOutput("ExportTableButton")   
                     )
            )
-            )
+            ) 
    ),
  
  #### Data Viz
@@ -615,9 +615,21 @@ body <- dashboardBody(
  tabItem(tabName = "Krona",
 
         fluidRow(
-            column(width=3,tableOutput("krona") )
+            column(width=3,
+                   p(strong("Krona plot")),
+                   img(src="Krona.png",height = 200, width = 220),
+                   a(href = "test_krona.html",target="_blank", "Click Here!")
+#                    tableOutput("krona") 
+
+),
+            column(width=3,
+            p(strong("Tree abundance")),
+            img(src="Tree.png",height = 200, width = 220),
+            a(href = "http://genopole.pasteur.fr/SynTView/flash/TreeAbundance",target="_blank", "Click Here!")
+            )
+            )
 #includeHTML("file:///home/aghozlan/workspace/SHAMAN_App/www/text.krona.html")
-          )  
+            
  )       
              
             )

--- a/ui.R.orig
+++ b/ui.R.orig
--- a/www/Alimintest.zip.orig
+++ b/www/Alimintest.zip.orig
--- a/www/All_Contrast.txt
+++ b/www/All_Contrast.txt
+"WT_0_6" "Delta_0_6" "DeltaCompl_0_6" "Delta_DeltaCompl_0_6" "Delta_WT_0_6" "WT_0_24" "Delta_0_24" "DeltaCompl_0_24" "Delta_DCompl_0_24" "Delta_WT_0_24" "Dcompl_WT_0_6" "Dcompl_WT_0_24"
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+-1 -1 -1 0 0 -1 -1 -1 0 0 0 0
+1 1 1 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 1 1 1 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0 0
+0 -1 0 -1 -1 0 -1 0 -1 -1 0 0
+0 0 -1 1 0 0 0 -1 1 0 -1 -1
+-1 0 0 0 1 -1 0 0 0 1 1 1
+0 1 0 1 1 0 0 0 0 0 0 0
+0 0 1 -1 0 0 0 0 0 0 1 0
+1 0 0 0 -1 0 0 0 0 0 -1 0
+0 0 0 0 0 0 1 0 1 1 0 0
+0 0 0 0 0 0 0 1 -1 0 0 1
+0 0 0 0 0 1 0 0 0 -1 0 -1
--- a/www/Interface.png
+++ b/www/Interface.png
--- a/www/Krona.png
+++ b/www/Krona.png
--- a/www/Tree.png
+++ b/www/Tree.png
--- a/www/Workflow.odp
+++ b/www/Workflow.odp
--- a/www/Workflow_SHAMAN.png
+++ b/www/Workflow_SHAMAN.png
--- a/www/Workflow_WB.png
+++ b/www/Workflow_WB.png
--- a/www/base/BaseContrast_144854511.txt
+++ b/www/base/BaseContrast_144854511.txt
+"WT_0_6" "Delta_0_6" "DeltaCompl_0_6" "Delta_DeltaCompl_0_6" "WT_0_24" "Delta_0_24" "DeltaCompl_0_24" "Delta_DCompl_0_24" "Delta_WT_0_24" "Dcompl_WT_0_6" "Dcompl_WT_0_24"
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+-1 -1 -1 0 -1 -1 -1 0 0 0 0
+1 1 1 0 0 0 0 0 0 0 0
+0 0 0 0 1 1 1 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 -1 0 -1 0 -1 0 -1 -1 0 0
+0 0 -1 1 0 0 -1 1 0 -1 -1
+-1 0 0 0 -1 0 0 0 1 1 1
+0 1 0 1 0 0 0 0 0 0 0
+0 0 1 -1 0 0 0 0 0 1 0
+1 0 0 0 0 0 0 0 0 -1 0
+0 0 0 0 0 1 0 1 1 0 0
+0 0 0 0 0 0 1 -1 0 0 1
+0 0 0 0 1 0 0 0 -1 0 -1
--- a/www/base/BaseContrast_147961524.txt
+++ b/www/base/BaseContrast_147961524.txt
--- a/www/base/BaseContrast_150596656.txt
+++ b/www/base/BaseContrast_150596656.txt
+"WT_0_6" "Delta_0_6" "DeltaCompl_0_6" "Delta_DeltaCompl_0_6" "Delta_WT_0_6" "WT_0_24" "Delta_0_24" "DeltaCompl_0_24" "Delta_DCompl_0_24" "Delta_WT_0_24" "Contrast name"
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+-1 -1 -1 0 0 -1 -1 -1 0 0 0
+1 1 1 0 0 0 0 0 0 0 0
+0 0 0 0 0 1 1 1 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 0 0 0 0 0 0 0 0 0 0
+0 -1 0 -1 -1 0 -1 0 -1 -1 0
+0 0 -1 1 0 0 0 -1 1 0 0
+-1 0 0 0 1 -1 0 0 0 1 0
+0 1 0 1 1 0 0 0 0 0 0
+0 0 1 -1 0 0 0 0 0 0 0
+1 0 0 0 -1 0 0 0 0 0 0
+0 0 0 0 0 0 1 0 1 1 0
+0 0 0 0 0 0 0 1 -1 0 0
+0 0 0 0 0 1 0 0 0 -1 0
--- a/www/base/BaseContrast_157026926.txt
+++ b/www/base/BaseContrast_157026926.txt
--- a/www/base/BaseContrast_171123185.txt
+++ b/www/base/BaseContrast_171123185.txt
+"Name..." "Name....1" "Name..."
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
+0 0 0
--- a/www/base/BaseContrast_173166537.txt
+++ b/www/base/BaseContrast_173166537.txt
--- a/www/base/BaseContrast_174816998.txt
+++ b/www/base/BaseContrast_174816998.txt
--- a/www/base/BaseContrast_182562001.txt
+++ b/www/base/BaseContrast_182562001.txt