Commit b715cf38 authored by Amine  GHOZLANE's avatar Amine GHOZLANE

Update for conda

parent c2f13b83
Pipeline #13958 failed
......@@ -34,3 +34,16 @@ build_master:
- docker push aghozlane/shaman
only:
- master
build_conda:
image: continuumio/miniconda3:latest
stage: build_conda
before_script:
- conda config --add channels bioconda
- conda config --add channels conda-forge
- conda config --add channels aghozlane
- conda config --set anaconda_upload yes
script:
- anaconda login --username "$DOCKER_USER" --password "$DOCKER_PASS"
- conda-build conda_inst
\ No newline at end of file
#!/usr/bin/Rscript --vanilla
#!/usr/bin/env Rscript --vanilla
prefix=Sys.getenv(x = "PREFIX")
prefix=paste(prefix, "bin", sep=.Platform$file.sep)
system(paste("python ", prefix, "shaman_bioblend/shaman_bioblend.py -w ", prefix,"shamanapp/www/masque/ -s -d", sep=.Platform$file.sep))
system(paste("Rscript -e 'library(\"shiny\");runApp(appDir=", prefix,"KronaRShy\", port=5438)'", sep=.Platform$file.sep, wait=FALSE)
system(paste(prefix, "Rscript -e 'library(\"shiny\");runApp(appDir=", prefix,"KronaRShy\", port=5438)'", sep=.Platform$file.sep, wait=FALSE)
runApp(paste("appDir= ", prefix, "shamanapp", sep=.Platform$file.sep)
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