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Commit c2e3d1e6 authored by Amine GHOZLANE's avatar Amine GHOZLANE
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Add export tables

parent 7334a71b
Pipeline #31919 passed with stages
in 106 minutes and 31 seconds
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Showing with 9 additions and 2 deletions
.gitignore
View file @ c2e3d1e6
redoofig.R
*.Rproj.user
*.Rhistory
*.RData
......
server.R
View file @ c2e3d1e6
......@@ -642,7 +642,8 @@ shinyServer(function(input, output,session) {
if(!is.null(tree))
{
res = tabBox(width = NULL, selected = "Count table",
tabPanel("Count table",DT::dataTableOutput("DataCounts")),
tabPanel("Count table",DT::dataTableOutput("DataCounts"),
downloadButton('ExportRawCounts', 'Export count table file')),
tabPanel("Taxonomy",DT::dataTableOutput("DataTaxo"),
actionButton("deleteTaxo", "Delete annotation"),
downloadButton('ExportTaxo', 'Export taxonomy file')),
......@@ -655,7 +656,8 @@ shinyServer(function(input, output,session) {
else
{
res = tabBox(width = NULL,selected = "Count table",
tabPanel("Count table",DT::dataTableOutput("DataCounts")),
tabPanel("Count table",DT::dataTableOutput("DataCounts"),
downloadButton('ExportRawCounts', 'Export count table file')),
tabPanel("Taxonomy",DT::dataTableOutput("DataTaxo"),
actionButton("deleteTaxo", "Delete annotation"),
downloadButton('ExportTaxo', 'Export taxonomy file')),
......@@ -2307,6 +2309,10 @@ shinyServer(function(input, output,session) {
write_biom(make_biom(dataMergeCounts()$CT_noNorm, sample_metadata=values$TargetWorking[,-1],
observation_metadata=dataInput()$data$taxo_biom), file)}
)
output$ExportRawCounts <- downloadHandler(
filename = function() { 'SHAMAN_count.csv' },
content = function(file){write.csv(dataInput()$data$counts, file)}
)
output$ExportTaxo <- downloadHandler(
filename = function() { 'SHAMAN_taxo.csv' },
......
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