diff --git a/README.md b/README.md
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+pip3 install bioblend python-daemon
diff --git a/alienTrimmerPF8contaminants.fasta b/alienTrimmerPF8contaminants.fasta
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-####################################################################################################
-# #
-# LAST UPDATE: 07 June 2013 #
-# #
-# This file contains a list a putative contaminant oligonucleotides that could occur in both ends #
-# of NGS reads. This file is formatted to be used by AlienTrimmer in order to trim off such #
-# contaminant oligonucleotides from FASTQ formatted read files. #
-# If you wish to add new contaminant sequences, use the FASTA format to name them, and be careful #
-# to always write one sequence per line (lower and/or uppercase characters). Comment lines could #
-# be written by using '#' as the first character. If you wish to not trim off some of these #
-# sequences when using AlienTrimmer, comment these lines with '#'. #
-# #
-# CONTENTS: #
-# 1. Homopolymers #
-# 2. Nextera DNA Sample Preparation Kit (Illumina) #
-# 3. Nextera Index Kit- PCR Primers #
-# 4. Nextera DNA Sample Prep Kit (Epicentre Biotechnologies) #
-# 5. TruSeq RNA and DNA Sample Prep Kits (v1 and v2) #
-# 6. Oligonucleotide sequences for TruSeq Small RNA Sample Prep Kit #
-# 7. Illumina oligonucleotide sequences for Genomic DNA #
-# 8. Illumina Paired End DNA oligonucleotide sequences #
-# 9. Illumina Oligonucleotide sequences for the Multiplexing Sample Prep Oligo Only Kit #
-# 10. Illumina DpnII expression #
-# 11. Illumina DpnII Gex #
-# 12. Illumina NlaIII expression #
-# 13. Illumina Small RNA Kits v1 and v1.5 #
-# 14. SOLID 3 System Oligo #
-# 15. Roche 454 Adaptors, Linkiers and Adapters #
-# 16. Ion Torrent adapter sequences #
-# #
-####################################################################################################
-
-
-
-###################################################################################################
-### 1. Homopolymers ###############################################################################
-###################################################################################################
-
-#poly-A
-AAAAAAAAAAAAAAAAAAAA
-#poly-C
-CCCCCCCCCCCCCCCCCCCC
-#poly-G
-GGGGGGGGGGGGGGGGGGGG
-#poly-T
-TTTTTTTTTTTTTTTTTTTT
-
-
-###################################################################################################
-### 2. Nextera(R) DNA Sample Preparation Kit (Illumina) ###########################################
-###################################################################################################
-
-#Nextera Transposase Sequence (FC-121-1031)
-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG
-#Nextera Transposase Sequence (FC-121-1030)
-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG
-
-
-###################################################################################################
-### 3. Nextera Index Kit- PCR Primers #############################################################
-###################################################################################################
-
-#Nextera Index Kit- PCR primer (FC-121-1012, Index N501)
-AATGATACGGCGACCACCGAGATCTACACtagatcgcTCGTCGGCAGCGTC
-#Nextera Index Kit- PCR primer (FC-121-1012, Index N502)
-AATGATACGGCGACCACCGAGATCTACACctctctatTCGTCGGCAGCGTC
-#Nextera Index Kit- PCR primer (FC-121-1012, Index N503)
-AATGATACGGCGACCACCGAGATCTACACtatcctctTCGTCGGCAGCGTC
-#Nextera Index Kit- PCR primer (FC-121-1012, Index N504)
-AATGATACGGCGACCACCGAGATCTACACagagtagaTCGTCGGCAGCGTC
-#Nextera Index Kit- PCR primer (FC-121-1012, Index N505)
-AATGATACGGCGACCACCGAGATCTACACgtaaggagTCGTCGGCAGCGTC
-#Nextera Index Kit- PCR primer (FC-121-1012, Index N506)
-AATGATACGGCGACCACCGAGATCTACACgctgcataTCGTCGGCAGCGTC
-#Nextera Index Kit- PCR primer (FC-121-1012, Index N507)
-AATGATACGGCGACCACCGAGATCTACACaaggagtaTCGTCGGCAGCGTC
-#Nextera Index Kit- PCR primer (FC-121-1012, Index N508)
-AATGATACGGCGACCACCGAGATCTACACctaagcctTCGTCGGCAGCGTC
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N701)
-CAAGCAGAAGACGGCATACGAGATtaaggcgaGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N702)
-CAAGCAGAAGACGGCATACGAGATcgtactagGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N703)
-CAAGCAGAAGACGGCATACGAGATaggcagaaGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N704)
-CAAGCAGAAGACGGCATACGAGATtcctgagcGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N705)
-CAAGCAGAAGACGGCATACGAGATggactcctGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N706)
-CAAGCAGAAGACGGCATACGAGATtaggcatgGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N707)
-CAAGCAGAAGACGGCATACGAGATctctctacGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N708)
-CAAGCAGAAGACGGCATACGAGATcagagaggGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N709)
-CAAGCAGAAGACGGCATACGAGATgctacgctGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N710)
-CAAGCAGAAGACGGCATACGAGATcgaggctgGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N711)
-CAAGCAGAAGACGGCATACGAGATaagaggcaGTCTCGTGGGCTCGG
-#Nextera Index Kit- PCR primer (FC-121-1011, Index N712)
-CAAGCAGAAGACGGCATACGAGATgtagaggaGTCTCGTGGGCTCGG
-
-
-#########################################################################################################
-### 4. Nextera DNA Sample Prep Kit (Epicentre Biotechnologies) ##########################################
-#########################################################################################################
-
-#Transposon Sequence 1
-GCCTCCCTCGCGCCATCAGAGATGTGTATAAGAGACAG
-#Transposon Sequence 2
-GCCTTGCCAGCCCGCTCAGAGATGTGTATAAGAGACAG
-#Adapter 1
-AATGATACGGCGACCACCGAGATCTACACGCCTCCCTCGCGCCATCAG
-#Adapter 2, Bar Code IDX1
-CAAGCAGAAGACGGCATACGAGATcgtgatCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX2
-CAAGCAGAAGACGGCATACGAGATacatcgCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX3
-CAAGCAGAAGACGGCATACGAGATgcctaaCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX4
-CAAGCAGAAGACGGCATACGAGATtggtcaCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX5
-CAAGCAGAAGACGGCATACGAGATcactgtCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX6
-CAAGCAGAAGACGGCATACGAGATattggcCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX7
-CAAGCAGAAGACGGCATACGAGATgatctgCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX8
-CAAGCAGAAGACGGCATACGAGATtcaagtCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX9
-CAAGCAGAAGACGGCATACGAGATctgatcCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX10
-CAAGCAGAAGACGGCATACGAGATaagctaCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX11
-CAAGCAGAAGACGGCATACGAGATgtagccCGGTCTGCCTTGCCAGCCCGCTCAG
-#Adapter 2, Bar Code IDX12
-CAAGCAGAAGACGGCATACGAGATtacaagCGGTCTGCCTTGCCAGCCCGCTCAG
-#PCR Primer 1
-AATGATACGGCGACCACCGA
-#PCR Primer 2
-CAAGCAGAAGACGGCATACGA
-
-
-#########################################################################################################
-### 5. TruSeq RNA and DNA Sample Prep Kits (v1 and v2) ##################################################
-#########################################################################################################
-
-#TruSeq Universal Adapter
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#TruSeq Adapter, Index 1
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACatcacgATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 2
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACcgatgtATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 3
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACttaggcATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 4
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACtgaccaATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 5
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACacagtgATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 6
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACgccaatATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 7
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACcagatcATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 8
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACacttgaATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 9
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACgatcagATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 10
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACtagcttATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 11
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACggctacATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 12
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACcttgtaATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 13
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACagtcaaCAATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 14
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACagttccGTATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 15
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACatgtcaGAATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 16
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACccgtccCGATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 18
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACgtccgcACATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 19
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACgtgaaaCGATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 20
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACgtggccTTATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 21
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACgtttcgGAATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 22
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACcgtacgTAATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 23
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACgagtggATATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 25
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACactgatATATCTCGTATGCCGTCTTCTGCTTG
-#TruSeq Adapter, Index 27
-GATCGGAAGAGCACACGTCTGAACTCCAGTCACattcctTTATCTCGTATGCCGTCTTCTGCTTG
-
-
-#########################################################################################################
-### 6. Oligonucleotide sequences for TruSeq Small RNA Sample Prep Kit ###################################
-#########################################################################################################
-#RNA 5’ Adapter (RA5)
-GUUCAGAGUUCUACAGUCCGACGAUC
-#RNA 3’ Adapter (RA3), part # 15013207
-TGGAATTCTCGGGTGCCAAGG
-#RNA RT Primer (RTP), part # 15013981
-GCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, (RP1), part # 15005505
-AATGATACGGCGACCACCGAGATCTACACGTTCAGAGTTCTACAGTCCGA
-#RNA PCR Primer, Index 1 (RPI1)
-CAAGCAGAAGACGGCATACGAGATcgtgatGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 2 (RPI2)
-CAAGCAGAAGACGGCATACGAGATacatcgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 3 (RPI3)
-CAAGCAGAAGACGGCATACGAGATgcctaaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 4 (RPI4)
-CAAGCAGAAGACGGCATACGAGATtggtcaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 5 (RPI5)
-CAAGCAGAAGACGGCATACGAGATcactgtGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 6 (RPI6)
-CAAGCAGAAGACGGCATACGAGATattggcGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 7 (RPI7)
-CAAGCAGAAGACGGCATACGAGATgatctgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 8 (RPI8)
-CAAGCAGAAGACGGCATACGAGATtcaagtGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 9 (RPI9)
-CAAGCAGAAGACGGCATACGAGATctgatcGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 10 (RPI10)
-CAAGCAGAAGACGGCATACGAGATaagctaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 11 (RPI11)
-CAAGCAGAAGACGGCATACGAGATgtagccGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 12 (RPI12)
-CAAGCAGAAGACGGCATACGAGATtacaagGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 13 (RPI13)
-CAAGCAGAAGACGGCATACGAGATttgactGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 14 (RPI14)
-CAAGCAGAAGACGGCATACGAGATggaactGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 15 (RPI15)
-CAAGCAGAAGACGGCATACGAGATtgacatGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 16 (RPI16)
-CAAGCAGAAGACGGCATACGAGATggacggGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 17 (RPI17)
-CAAGCAGAAGACGGCATACGAGATctctacGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 18 (RPI18)
-CAAGCAGAAGACGGCATACGAGATgcggacGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 19 (RPI19)
-CAAGCAGAAGACGGCATACGAGATtttcacGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 20 (RPI20)
-CAAGCAGAAGACGGCATACGAGATggccacGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 21 (RPI21)
-CAAGCAGAAGACGGCATACGAGATcgaaacGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 22 (RPI22)
-CAAGCAGAAGACGGCATACGAGATcgtacgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 23 (RPI23)
-CAAGCAGAAGACGGCATACGAGATccactcGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 24 (RPI24)
-CAAGCAGAAGACGGCATACGAGATgctaccGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 25 (RPI25)
-CAAGCAGAAGACGGCATACGAGATatcagtGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 26 (RPI26)
-CAAGCAGAAGACGGCATACGAGATgctcatGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 27 (RPI27)
-CAAGCAGAAGACGGCATACGAGATaggaatGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 28 (RPI28)
-CAAGCAGAAGACGGCATACGAGATcttttgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 29 (RPI29)
-CAAGCAGAAGACGGCATACGAGATtagttgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 30 (RPI30)
-CAAGCAGAAGACGGCATACGAGATccggtgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 31 (RPI31)
-CAAGCAGAAGACGGCATACGAGATatcgtgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 32 (RPI32)
-CAAGCAGAAGACGGCATACGAGATtgagtgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 33 (RPI33)
-CAAGCAGAAGACGGCATACGAGATcgcctgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 34 (RPI34)
-CAAGCAGAAGACGGCATACGAGATgccatgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 35 (RPI35)
-CAAGCAGAAGACGGCATACGAGATaaaatgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 36 (RPI36)
-CAAGCAGAAGACGGCATACGAGATtgttggGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 37 (RPI37)
-CAAGCAGAAGACGGCATACGAGATattccgGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 38 (RPI38)
-CAAGCAGAAGACGGCATACGAGATagctagGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 39 (RPI39)
-CAAGCAGAAGACGGCATACGAGATgtatagGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 40 (RPI40)
-CAAGCAGAAGACGGCATACGAGATtctgagGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 41 (RPI41)
-CAAGCAGAAGACGGCATACGAGATgtcgtcGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 42 (RPI42)
-CAAGCAGAAGACGGCATACGAGATcgattaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 43 (RPI43)
-CAAGCAGAAGACGGCATACGAGATgctgtaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 44 (RPI44)
-CAAGCAGAAGACGGCATACGAGATattataGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 45 (RPI45)
-CAAGCAGAAGACGGCATACGAGATgaatgaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 46 (RPI46)
-CAAGCAGAAGACGGCATACGAGATtcgggaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 47 (RPI47)
-CAAGCAGAAGACGGCATACGAGATcttcgaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-#RNA PCR Primer, Index 48 (RPI48)
-CAAGCAGAAGACGGCATACGAGATtgccgaGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
-
-
-#########################################################################################################
-### 7. Illumina oligonucleotide sequences for Genomic DNA ###############################################
-#########################################################################################################
-
-#Adapter 1
-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG
-#Adapter 2
-ACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#PCR Primer 1
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#PCR Primer 2
-CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT
-#Genomic DNA Sequencing Primer
-ACACTCTTTCCCTACACGACGCTCTTCCGATCT
-
-
-##########################################################################################################
-### 8. Illumina Paired End DNA oligonucleotide sequences #################################################
-##########################################################################################################
-
-#PE Adapter 1
-GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
-#PE Adapter 2
-ACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#PE PCR Primer 1.0
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#PE PCR Primer 2.0
-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
-#PE Read 1 Sequencing Primer
-ACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#PE Read 2 Sequencing Primer
-CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
-
-
-#########################################################################################################
-### 9. Illumina Oligonucleotide sequences for the Multiplexing Sample Prep Oligo Only Kit ###############
-#########################################################################################################
-
-#Multiplexing Adapter 1
-GATCGGAAGAGCACACGTCT
-#Multiplexing Adapter 2
-ACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#Multiplexing PCR Primer 1.0
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#Multiplexing PCR Primer 2.0
-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT
-#Multiplexing Read 1 Sequencing Primer
-ACACTCTTTCCCTACACGACGCTCTTCCGATCT
-#Multiplexing Index Read Sequencing Primer
-GATCGGAAGAGCACACGTCTGAACTCCAGTCAC
-#Multiplexing Read 2 Sequencing Primer
-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT
-#PCR Primer, Index 1
-CAAGCAGAAGACGGCATACGAGATCGTGATGTGACTGGAGTTC
-#PCR Primer, Index 2
-CAAGCAGAAGACGGCATACGAGATACATCGGTGACTGGAGTTC
-#PCR Primer, Index 3
-CAAGCAGAAGACGGCATACGAGATGCCTAAGTGACTGGAGTTC
-#PCR Primer, Index 4
-CAAGCAGAAGACGGCATACGAGATTGGTCAGTGACTGGAGTTC
-#PCR Primer, Index 5
-CAAGCAGAAGACGGCATACGAGATCACTGTGTGACTGGAGTTC
-#PCR Primer, Index 6
-CAAGCAGAAGACGGCATACGAGATATTGGCGTGACTGGAGTTC
-#PCR Primer, Index 7
-CAAGCAGAAGACGGCATACGAGATGATCTGGTGACTGGAGTTC
-#PCR Primer, Index 8
-CAAGCAGAAGACGGCATACGAGATTCAAGTGTGACTGGAGTTC
-#PCR Primer, Index 9
-CAAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTC
-#PCR Primer, Index 10
-CAAGCAGAAGACGGCATACGAGATAAGCTAGTGACTGGAGTTC
-#PCR Primer, Index 11
-CAAGCAGAAGACGGCATACGAGATGTAGCCGTGACTGGAGTTC
-#PCR Primer, Index 12
-CAAGCAGAAGACGGCATACGAGATTACAAGGTGACTGGAGTTC
-
-
-##########################################################################################################
-### 10. Illumina DpnII expression ###############################
-### from http://www.omicsoft.com/downloads/ngs/contamination_list/v1.txt ###############################
-##########################################################################################################
-
-#Illumina DpnII expression Adapter 1
-ACAGGTTCAGAGTTCTACAGTCCGAC
-#Illumina DpnII expression Adapter 2
-CAAGCAGAAGACGGCATACGA
-#Illumina DpnII expression PCR Primer 1
-CAAGCAGAAGACGGCATACGA
-#Illumina DpnII expression PCR Primer 2
-AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
-#Illumina DpnII expression Sequencing Primer
-CGACAGGTTCAGAGTTCTACAGTCCGACGATC
-
-
-#########################################################################################################
-### 11. Illumina DpnII Gex ##############################
-### from http://www.omicsoft.com/downloads/ngs/contamination_list/v1.txt ##############################
-#########################################################################################################
-
-#Illumina DpnII Gex Adapter 1
-GATCGTCGGACTGTAGAACTCTGAAC
-#Illumina DpnII Gex Adapter 1.01
-ACAGGTTCAGAGTTCTACAGTCCGAC
-#Illumina DpnII Gex Adapter 2
-CAAGCAGAAGACGGCATACGA
-#Illumina DpnII Gex Adapter 2.01
-TCGTATGCCGTCTTCTGCTTG
-#Illumina DpnII Gex PCR Primer 1
-CAAGCAGAAGACGGCATACGA
-#Illumina DpnII Gex PCR Primer 2
-AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
-#Illumina DpnII Gex Sequencing Primer
-CGACAGGTTCAGAGTTCTACAGTCCGACGATC
-
-
-##########################################################################################################
-### 12. Illumina NlaIII expression ###############################
-### from http://www.omicsoft.com/downloads/ngs/contamination_list/v1.txt ###############################
-##########################################################################################################
-#Illumina NlaIII expression Adapter 1
-ACAGGTTCAGAGTTCTACAGTCCGACATG
-#Illumina NlaIII expression Adapter 2
-CAAGCAGAAGACGGCATACGA
-#Illumina NlaIII expression PCR Primer 1
-CAAGCAGAAGACGGCATACGA
-#Illumina NlaIII expression PCR Primer 2
-AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
-#Illumina NlaIII expression Sequencing Primer
-CCGACAGGTTCAGAGTTCTACAGTCCGACATG
-
-
-#########################################################################################################
-### 13. Illumina Small RNA Kits v1 and v1.5 ##############################
-### from http://www.omicsoft.com/downloads/ngs/contamination_list/v1.txt ##############################
-#########################################################################################################
-#Illumina Small RNA Adapter 1
-GTTCAGAGTTCTACAGTCCGACGATC
-#Illumina Small RNA Adapter 2
-TCGTATGCCGTCTTCTGCTTGT
-#Illumina Small RNA RT Primer
-CAAGCAGAAGACGGCATACGA
-#Illumina Small RNA PCR Primer 1
-CAAGCAGAAGACGGCATACGA
-#Illumina Small RNA PCR Primer 2
-AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
-#Illumina Small RNA Sequencing Primer
-CGACAGGTTCAGAGTTCTACAGTCCGACGATC
-
-
-########################################################################################################
-### 14. SOLID 3 System Oligo ##############
-### from http://www.omicsoft.com/downloads/ngs/contamination_list/v1.txt ##############
-### SOLiD Fragment Library Barcoding Kit 1–96 protocol (Part Number 4448274 Rev. A) ##############
-########################################################################################################
-
-#ABI Dynabead EcoP Oligo
-CTGATCTAGAGGTACCGGATCCCAGCAGT
-#ABI Solid3 Adapter A
-CTGCCCCGGGTTCCTCATTCTCTCAGCAGCATG
-#ABI Solid3 Adapter B - Multiplex Library PCR-1
-CCACTACGCCTCCGCTTTCCTCTCTATGGGCAGTCGGTGAT
-#ABI Solid3 5' AMP Primer
-CCACTACGCCTCCGCTTTCCTCTCTATG
-#ABI Solid3 3' AMP Primer - Multiplex Library PCR-2
-CTGCCCCGGGTTCCTCATTCT
-#ABI Solid3 EF1 alpha Sense Primer
-CATGTGTGTTGAGAGCTTC
-#ABI Solid3 EF1 alpha Antisense Primer
-GAAAACCAAAGTGGTCCAC
-#ABI Solid3 GAPDH Forward Primer
-TTAGCACCCCTGGCCAAGG
-#ABI Solid3 GAPDH Reverse Primer
-CTTACTCCTTGGAGGCCATG
-#SOLID Multiplex Library P1 Adaptor
-ATCACCGACTGCCCATAGAGAGGTT
-
-
-########################################################################################################
-### 15. Roche 454 Adaptors ######
-### from http://nebc.nerc.ac.uk/bioinformatics/documentation/mira/html/mira_faq.html#section_5 ######
-### http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=SffToCA ######
-### ftp://ftp.ncbi.nih.gov/pub/UniVec/UniVec
-########################################################################################################
-
-#5' 454 adaptor
-GCCTCCCTCGCGCCATCAGATCGTAGGCACCTGAAA
-#3' 454 adaptor
-GCCTTGCCAGCCCGCTCAGATTGATGGTGCCTACAG
-#454 Adaptor A
-CTGAGACAGGGAGGGAACAGATGGGACACGCAGGGATGAGATGG
-#454 Adaptor B
-CTGAGACACGCAACAGGGGATAGGCAAGGCACACAGGGGATAGG
-#gnl|uv|NGB00599.1:1-47 Evrogen Mint 454 PCR Primer
-ACGCAGAGTGGCCGAGGCGGCCTTTTGTCTTTTCTTCTGTTTCTTTT
-#gnl|uv|NGB00385.1:1-44 454 FLX linker
-GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC
-#gnl|uv|NGB00386.1:1-42 454 Titanium linker
-TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG
-#gnl|uv|NGB00417.1:1-40 454 Life Sciences GS FLX Titanium MID-1 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACGAGTGCGT
-#Ti-MID1-Aprime
-ACGCACTCGTCTGAGTCGGAGA
-#gnl|uv|NGB00418.1:1-40 454 Life Sciences GS FLX Titanium MID-2 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACGCTCGACA
-#gnl|uv|NGB00419.1:1-40 454 Life Sciences GS FLX Titanium MID-3 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGACGCACTC
-#gnl|uv|NGB00420.1:1-40 454 Life Sciences GS FLX Titanium MID-4 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGCACTGTAG
-#gnl|uv|NGB00421.1:1-40 454 Life Sciences GS FLX Titanium MID-5 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATCAGACACG
-#gnl|uv|NGB00422.1:1-40 454 Life Sciences GS FLX Titanium MID-6 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATATCGCGAG
-#gnl|uv|NGB00423.1:1-40 454 Life Sciences GS FLX Titanium MID-7 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGTGTCTCTA
-#gnl|uv|NGB00424.1:1-40 454 Life Sciences GS FLX Titanium MID-8 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTCGCGTGTC
-#gnl|uv|NGB00425.1:1-40 454 Life Sciences GS FLX Titanium MID-10 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCTCTATGCG
-#gnl|uv|NGB00426.1:1-40 454 Life Sciences GS FLX Titanium MID-11 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGATACGTCT
-#gnl|uv|NGB00427.1:1-40 454 Life Sciences GS FLX Titanium MID-13 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCATAGTAGTG
-#gnl|uv|NGB00428.1:1-40 454 Life Sciences GS FLX Titanium MID-14 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGAGAGATAC
-#gnl|uv|NGB00429.1:1-40 454 Life Sciences GS FLX Titanium MID-15 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATACGACGTA
-#gnl|uv|NGB00430.1:1-40 454 Life Sciences GS FLX Titanium MID-16 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCACGTACTA
-#gnl|uv|NGB00431.1:1-40 454 Life Sciences GS FLX Titanium MID-17 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGTCTAGTAC
-#gnl|uv|NGB00432.1:1-40 454 Life Sciences GS FLX Titanium MID-18 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCTACGTAGC
-#gnl|uv|NGB00433.1:1-40 454 Life Sciences GS FLX Titanium MID-19 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGTACTACTC
-#gnl|uv|NGB00434.1:1-40 454 Life Sciences GS FLX Titanium MID-20 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACGACTACAG
-#gnl|uv|NGB00435.1:1-40 454 Life Sciences GS FLX Titanium MID-21 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGTAGACTAG
-#gnl|uv|NGB00436.1:1-40 454 Life Sciences GS FLX Titanium MID-22 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTACGAGTATG
-#gnl|uv|NGB00437.1:1-40 454 Life Sciences GS FLX Titanium MID-23 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTACTCTCGTG
-#gnl|uv|NGB00438.1:1-40 454 Life Sciences GS FLX Titanium MID-24 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTAGAGACGAG
-#gnl|uv|NGB00439.1:1-40 454 Life Sciences GS FLX Titanium MID-25 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCGTCGCTCG
-#gnl|uv|NGB00440.1:1-40 454 Life Sciences GS FLX Titanium MID-26 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACATACGCGT
-#gnl|uv|NGB00441.1:1-40 454 Life Sciences GS FLX Titanium MID-27 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACGCGAGTAT
-#gnl|uv|NGB00442.1:1-40 454 Life Sciences GS FLX Titanium MID-28 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACTACTATGT
-#gnl|uv|NGB00443.1:1-40 454 Life Sciences GS FLX Titanium MID-29 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACTGTACAGT
-#gnl|uv|NGB00444.1:1-40 454 Life Sciences GS FLX Titanium MID-30 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGACTATACT
-#gnl|uv|NGB00445.1:1-40 454 Life Sciences GS FLX Titanium MID-31 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGCGTCGTCT
-#gnl|uv|NGB00446.1:1-40 454 Life Sciences GS FLX Titanium MID-32 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTACGCTAT
-#gnl|uv|NGB00447.1:1-40 454 Life Sciences GS FLX Titanium MID-33 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATAGAGTACT
-#gnl|uv|NGB00448.1:1-40 454 Life Sciences GS FLX Titanium MID-34 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCACGCTACGT
-#gnl|uv|NGB00449.1:1-40 454 Life Sciences GS FLX Titanium MID-35 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCAGTAGACGT
-#gnl|uv|NGB00450.1:1-40 454 Life Sciences GS FLX Titanium MID-36 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGACGTGACT
-#gnl|uv|NGB00451.1:1-40 454 Life Sciences GS FLX Titanium MID-37 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTACACACACT
-#gnl|uv|NGB00452.1:1-40 454 Life Sciences GS FLX Titanium MID-38 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTACACGTGAT
-#gnl|uv|NGB00453.1:1-40 454 Life Sciences GS FLX Titanium MID-39 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTACAGATCGT
-#gnl|uv|NGB00454.1:1-40 454 Life Sciences GS FLX Titanium MID-40 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTACGCTGTCT
-#gnl|uv|NGB00455.1:1-40 454 Life Sciences GS FLX Titanium MID-41 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTAGTGTAGAT
-#gnl|uv|NGB00456.1:1-40 454 Life Sciences GS FLX Titanium MID-42 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCGATCACGT
-#gnl|uv|NGB00457.1:1-40 454 Life Sciences GS FLX Titanium MID-43 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCGCACTAGT
-#gnl|uv|NGB00458.1:1-40 454 Life Sciences GS FLX Titanium MID-44 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCTAGCGACT
-#gnl|uv|NGB00459.1:1-40 454 Life Sciences GS FLX Titanium MID-45 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCTATACTAT
-#gnl|uv|NGB00460.1:1-40 454 Life Sciences GS FLX Titanium MID-46 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGACGTATGT
-#gnl|uv|NGB00461.1:1-40 454 Life Sciences GS FLX Titanium MID-47 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGTGAGTAGT
-#gnl|uv|NGB00462.1:1-40 454 Life Sciences GS FLX Titanium MID-48 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACAGTATATA
-#gnl|uv|NGB00463.1:1-40 454 Life Sciences GS FLX Titanium MID-49 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACGCGATCGA
-#gnl|uv|NGB00464.1:1-40 454 Life Sciences GS FLX Titanium MID-50 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACTAGCAGTA
-#gnl|uv|NGB00465.1:1-40 454 Life Sciences GS FLX Titanium MID-51 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGCTCACGTA
-#gnl|uv|NGB00466.1:1-40 454 Life Sciences GS FLX Titanium MID-52 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTATACATA
-#gnl|uv|NGB00467.1:1-40 454 Life Sciences GS FLX Titanium MID-53 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTCGAGAGA
-#gnl|uv|NGB00468.1:1-40 454 Life Sciences GS FLX Titanium MID-54 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTGCTACGA
-#gnl|uv|NGB00469.1:1-40 454 Life Sciences GS FLX Titanium MID-55 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGATCGTATA
-#gnl|uv|NGB00470.1:1-40 454 Life Sciences GS FLX Titanium MID-56 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGCAGTACGA
-#gnl|uv|NGB00471.1:1-40 454 Life Sciences GS FLX Titanium MID-57 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGCGTATACA
-#gnl|uv|NGB00472.1:1-40 454 Life Sciences GS FLX Titanium MID-58 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGTACAGTCA
-#gnl|uv|NGB00473.1:1-40 454 Life Sciences GS FLX Titanium MID-59 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGTACTCAGA
-#gnl|uv|NGB00474.1:1-40 454 Life Sciences GS FLX Titanium MID-60 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTACGCTCTA
-#gnl|uv|NGB00475.1:1-40 454 Life Sciences GS FLX Titanium MID-61 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTATAGCGTA
-#gnl|uv|NGB00476.1:1-40 454 Life Sciences GS FLX Titanium MID-62 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTACGTCATCA
-#gnl|uv|NGB00477.1:1-40 454 Life Sciences GS FLX Titanium MID-63 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTAGTCGCATA
-#gnl|uv|NGB00478.1:1-40 454 Life Sciences GS FLX Titanium MID-64 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTATATATACA
-#gnl|uv|NGB00479.1:1-40 454 Life Sciences GS FLX Titanium MID-65 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTATGCTAGTA
-#gnl|uv|NGB00480.1:1-40 454 Life Sciences GS FLX Titanium MID-66 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCACGCGAGA
-#gnl|uv|NGB00481.1:1-40 454 Life Sciences GS FLX Titanium MID-67 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCGATAGTGA
-#gnl|uv|NGB00482.1:1-40 454 Life Sciences GS FLX Titanium MID-68 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCGCTGCGTA
-#gnl|uv|NGB00483.1:1-40 454 Life Sciences GS FLX Titanium MID-69 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCTGACGTCA
-#gnl|uv|NGB00484.1:1-40 454 Life Sciences GS FLX Titanium MID-70 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGAGTCAGTA
-#gnl|uv|NGB00485.1:1-40 454 Life Sciences GS FLX Titanium MID-71 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGTAGTGTGA
-#gnl|uv|NGB00486.1:1-40 454 Life Sciences GS FLX Titanium MID-72 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGTCACACGA
-#gnl|uv|NGB00487.1:1-40 454 Life Sciences GS FLX Titanium MID-73 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGTCGTCGCA
-#gnl|uv|NGB00488.1:1-40 454 Life Sciences GS FLX Titanium MID-74 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACACATACGC
-#gnl|uv|NGB00489.1:1-40 454 Life Sciences GS FLX Titanium MID-75 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACAGTCGTGC
-#gnl|uv|NGB00490.1:1-40 454 Life Sciences GS FLX Titanium MID-76 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACATGACGAC
-#gnl|uv|NGB00491.1:1-40 454 Life Sciences GS FLX Titanium MID-77 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACGACAGCTC
-#gnl|uv|NGB00492.1:1-40 454 Life Sciences GS FLX Titanium MID-78 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACGTCTCATC
-#gnl|uv|NGB00493.1:1-40 454 Life Sciences GS FLX Titanium MID-79 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACTCATCTAC
-#gnl|uv|NGB00494.1:1-40 454 Life Sciences GS FLX Titanium MID-80 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACTCGCGCAC
-#gnl|uv|NGB00495.1:1-40 454 Life Sciences GS FLX Titanium MID-81 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGAGCGTCAC
-#gnl|uv|NGB00496.1:1-40 454 Life Sciences GS FLX Titanium MID-82 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGCGACTAGC
-#gnl|uv|NGB00497.1:1-40 454 Life Sciences GS FLX Titanium MID-83 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTAGTGATC
-#gnl|uv|NGB00498.1:1-40 454 Life Sciences GS FLX Titanium MID-84 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTGACACAC
-#gnl|uv|NGB00499.1:1-40 454 Life Sciences GS FLX Titanium MID-85 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTGTATGTC
-#gnl|uv|NGB00500.1:1-40 454 Life Sciences GS FLX Titanium MID-86 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATAGATAGAC
-#gnl|uv|NGB00501.1:1-40 454 Life Sciences GS FLX Titanium MID-87 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATATAGTCGC
-#gnl|uv|NGB00502.1:1-40 454 Life Sciences GS FLX Titanium MID-88 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATCTACTGAC
-#gnl|uv|NGB00503.1:1-40 454 Life Sciences GS FLX Titanium MID-89 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCACGTAGATC
-#gnl|uv|NGB00504.1:1-40 454 Life Sciences GS FLX Titanium MID-90 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCACGTGTCGC
-#gnl|uv|NGB00505.1:1-40 454 Life Sciences GS FLX Titanium MID-91 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCATACTCTAC
-#gnl|uv|NGB00506.1:1-40 454 Life Sciences GS FLX Titanium MID-92 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGACACTATC
-#gnl|uv|NGB00507.1:1-40 454 Life Sciences GS FLX Titanium MID-93 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGAGACGCGC
-#gnl|uv|NGB00508.1:1-40 454 Life Sciences GS FLX Titanium MID-94 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGTATGCGAC
-#gnl|uv|NGB00509.1:1-40 454 Life Sciences GS FLX Titanium MID-95 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGTCGATCTC
-#gnl|uv|NGB00510.1:1-40 454 Life Sciences GS FLX Titanium MID-96 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTACGACTGC
-#gnl|uv|NGB00511.1:1-40 454 Life Sciences GS FLX Titanium MID-97 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTAGTCACTC
-#gnl|uv|NGB00512.1:1-40 454 Life Sciences GS FLX Titanium MID-98 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTCTACGCTC
-#gnl|uv|NGB00513.1:1-40 454 Life Sciences GS FLX Titanium MID-99 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTGTACATAC
-#gnl|uv|NGB00514.1:1-40 454 Life Sciences GS FLX Titanium MID-100 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTAGACTGCAC
-#gnl|uv|NGB00515.1:1-40 454 Life Sciences GS FLX Titanium MID-101 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTAGCGCGCGC
-#gnl|uv|NGB00516.1:1-40 454 Life Sciences GS FLX Titanium MID-102 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTAGCTCTATC
-#gnl|uv|NGB00517.1:1-40 454 Life Sciences GS FLX Titanium MID-103 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTATAGACATC
-#gnl|uv|NGB00518.1:1-40 454 Life Sciences GS FLX Titanium MID-104 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTATGATACGC
-#gnl|uv|NGB00519.1:1-40 454 Life Sciences GS FLX Titanium MID-105 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCACTCATAC
-#gnl|uv|NGB00520.1:1-40 454 Life Sciences GS FLX Titanium MID-106 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCATCGAGTC
-#gnl|uv|NGB00521.1:1-40 454 Life Sciences GS FLX Titanium MID-107 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCGAGCTCTC
-#gnl|uv|NGB00522.1:1-40 454 Life Sciences GS FLX Titanium MID-108 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCGCAGACAC
-#gnl|uv|NGB00523.1:1-40 454 Life Sciences GS FLX Titanium MID-109 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCTGTCTCGC
-#gnl|uv|NGB00524.1:1-40 454 Life Sciences GS FLX Titanium MID-110 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGAGTGACGC
-#gnl|uv|NGB00525.1:1-40 454 Life Sciences GS FLX Titanium MID-111 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGATGTGTAC
-#gnl|uv|NGB00526.1:1-40 454 Life Sciences GS FLX Titanium MID-112 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGCTATAGAC
-#gnl|uv|NGB00527.1:1-40 454 Life Sciences GS FLX Titanium MID-113 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGCTCGCTAC
-#gnl|uv|NGB00528.1:1-40 454 Life Sciences GS FLX Titanium MID-114 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACGTGCAGCG
-#gnl|uv|NGB00529.1:1-40 454 Life Sciences GS FLX Titanium MID-115 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGACTCACAGAG
-#gnl|uv|NGB00530.1:1-40 454 Life Sciences GS FLX Titanium MID-116 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGACTCAGCG
-#gnl|uv|NGB00531.1:1-40 454 Life Sciences GS FLX Titanium MID-117 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGAGAGTGTG
-#gnl|uv|NGB00532.1:1-40 454 Life Sciences GS FLX Titanium MID-118 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGCTATCGCG
-#gnl|uv|NGB00533.1:1-40 454 Life Sciences GS FLX Titanium MID-119 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTCTGACTG
-#gnl|uv|NGB00534.1:1-40 454 Life Sciences GS FLX Titanium MID-120 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGAGTGAGCTCG
-#gnl|uv|NGB00535.1:1-40 454 Life Sciences GS FLX Titanium MID-121 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATAGCTCTCG
-#gnl|uv|NGB00536.1:1-40 454 Life Sciences GS FLX Titanium MID-122 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATCACGTGCG
-#gnl|uv|NGB00537.1:1-40 454 Life Sciences GS FLX Titanium MID-123 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATCGTAGCAG
-#gnl|uv|NGB00538.1:1-40 454 Life Sciences GS FLX Titanium MID-124 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATCGTCTGTG
-#gnl|uv|NGB00539.1:1-40 454 Life Sciences GS FLX Titanium MID-125 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATGTACGATG
-#gnl|uv|NGB00540.1:1-40 454 Life Sciences GS FLX Titanium MID-126 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGATGTGTCTAG
-#gnl|uv|NGB00541.1:1-40 454 Life Sciences GS FLX Titanium MID-127 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCACACGATAG
-#gnl|uv|NGB00542.1:1-40 454 Life Sciences GS FLX Titanium MID-128 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCACTCGCACG
-#gnl|uv|NGB00543.1:1-40 454 Life Sciences GS FLX Titanium MID-129 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCAGACGTCTG
-#gnl|uv|NGB00544.1:1-40 454 Life Sciences GS FLX Titanium MID-130 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCAGTACTGCG
-#gnl|uv|NGB00545.1:1-40 454 Life Sciences GS FLX Titanium MID-131 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGACAGCGAG
-#gnl|uv|NGB00546.1:1-40 454 Life Sciences GS FLX Titanium MID-132 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGATCTGTCG
-#gnl|uv|NGB00547.1:1-40 454 Life Sciences GS FLX Titanium MID-133 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGCGTGCTAG
-#gnl|uv|NGB00548.1:1-40 454 Life Sciences GS FLX Titanium MID-134 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGCTCGAGTG
-#gnl|uv|NGB00549.1:1-40 454 Life Sciences GS FLX Titanium MID-135 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCGTGATGACG
-#gnl|uv|NGB00550.1:1-40 454 Life Sciences GS FLX Titanium MID-136 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTATGTACAG
-#gnl|uv|NGB00551.1:1-40 454 Life Sciences GS FLX Titanium MID-137 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTCGATATAG
-#gnl|uv|NGB00552.1:1-40 454 Life Sciences GS FLX Titanium MID-138 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTCGCACGCG
-#gnl|uv|NGB00553.1:1-40 454 Life Sciences GS FLX Titanium MID-139 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTGCGTCACG
-#gnl|uv|NGB00554.1:1-40 454 Life Sciences GS FLX Titanium MID-140 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGCTGTGCGTCG
-#gnl|uv|NGB00555.1:1-40 454 Life Sciences GS FLX Titanium MID-141 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTAGCATACTG
-#gnl|uv|NGB00556.1:1-40 454 Life Sciences GS FLX Titanium MID-142 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTATACATGTG
-#gnl|uv|NGB00557.1:1-40 454 Life Sciences GS FLX Titanium MID-143 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTATCACTCAG
-#gnl|uv|NGB00558.1:1-40 454 Life Sciences GS FLX Titanium MID-144 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTATCTGATAG
-#gnl|uv|NGB00559.1:1-40 454 Life Sciences GS FLX Titanium MID-145 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCGTGACATG
-#gnl|uv|NGB00560.1:1-40 454 Life Sciences GS FLX Titanium MID-146 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTCTGATCGAG
-#gnl|uv|NGB00561.1:1-40 454 Life Sciences GS FLX Titanium MID-147 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGACATCTCG
-#gnl|uv|NGB00562.1:1-40 454 Life Sciences GS FLX Titanium MID-148 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGAGCTAGAG
-#gnl|uv|NGB00563.1:1-40 454 Life Sciences GS FLX Titanium MID-149 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGATAGAGCG
-#gnl|uv|NGB00564.1:1-40 454 Life Sciences GS FLX Titanium MID-150 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGCGTGTGCG
-#gnl|uv|NGB00565.1:1-40 454 Life Sciences GS FLX Titanium MID-151 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGCTAGTCAG
-#gnl|uv|NGB00566.1:1-40 454 Life Sciences GS FLX Titanium MID-152 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGTATCACAG
-#gnl|uv|NGB00567.1:1-40 454 Life Sciences GS FLX Titanium MID-153 Adaptor A
-CCATCTCATCCCTGCGTGTCTCCGACTCAGTGTGCGCGTG
-#gnl|uv|NGB00569.1:1-33 454 GS FLX Titanium Rapid Library Adaptor B universal segment
-AGTCGACGTCTCTCAAGGCACACAGGGGATAGG
-AGTCGCCGTCTCTCAAGGCACACAGGGGATAGG
-AGTCGGCGTCTCTCAAGGCACACAGGGGATAGG
-AGTCGTCGTCTCTCAAGGCACACAGGGGATAGG
-CGTCGACGTCTCTCAAGGCACACAGGGGATAGG
-CGTCGCCGTCTCTCAAGGCACACAGGGGATAGG
-CGTCGGCGTCTCTCAAGGCACACAGGGGATAGG
-CGTCGTCGTCTCTCAAGGCACACAGGGGATAGG
-GGTCGACGTCTCTCAAGGCACACAGGGGATAGG
-GGTCGCCGTCTCTCAAGGCACACAGGGGATAGG
-GGTCGGCGTCTCTCAAGGCACACAGGGGATAGG
-GGTCGTCGTCTCTCAAGGCACACAGGGGATAGG
-TGTCGACGTCTCTCAAGGCACACAGGGGATAGG
-TGTCGCCGTCTCTCAAGGCACACAGGGGATAGG
-TGTCGGCGTCTCTCAAGGCACACAGGGGATAGG
-TGTCGTCGTCTCTCAAGGCACACAGGGGATAGG
-#gnl|uv|NGB00416.1:1-30 454 Life Sciences GS FLX Titanium MID Adaptor B
-CCTATCCCCTGTGTGCCTTGGCAGTCTCAG
-#Ti-MID-Bprime
-CTGAGACTGCCA
-#gnl|uv|NGB00568.1:1-30 454 GS FLX Titanium Rapid Library Adaptor A universal segment
-CCATCTCATCCCTGCGTGTCTCCGACGACT
-#gnl|uv|NGB00414.1:1-25 454 Life Sciences GS FLX Titanium Primer A-key
-CGTATCGCCTCCCTCGCGCCATCAG
-#gnl|uv|NGB00415.1:1-25 454 Life Sciences GS FLX Titanium Primer B-key
-CTATGCGCCTTGCCAGCCCGCTCAG
-
-
-########################################################################################################
-### 16. Ion Torrent adapter sequences #############################
-### from V. Caro #############################
-########################################################################################################
-
-#Ion A Adapter (non barcoded)
-CCATCTCATCCCTGCGTGTCTCCGACTCAG
-#Ion A Adapter (non barcoded)
-GGTAGAGTAGGGACGCACAGAGGCTGAGTC
-#Ion P1 Adapter
-CCACTACGCCTCCGCTTTCCTCTCTATGGGCAGTCGGTGAT
-#Ion P1 Adapter
-GGTGATGCGGAGGCGAAAGGAGAGATACCCGTCAGCCACTA
-
-###################################################################################################
-### 17. 16S primer V1V3 MiSeq ####################################################################
-###################################################################################################
-#PCR1_V1_V3F
-CTCTTTCCCTACACGACGCTCTTCCGATCTAGAGTTTGATCCTGGCTCAG
-#PCR1_V1_V3R
-CTGGAGTTCAGACGTGTGCTCTTCCGATCTGTATTACCGCGGCTGCTGG
-
-###################################################################################################
-### 18. 16S primer V4V5 MiSeq #####################################################################
-###################################################################################################
-#PCR1_515F
-CTTTCCCTACACGACGCTCTTCCGATCTGTGYCAGCMGCCGCGGTA
-#PCR1_928R
-GGAGTTCAGACGTGTGCTCTTCCGATCTCCCCGYCAATTCMTTTRAGT
-
-###################################################################################################
-#### 19. 16S Adapter + primer V5V6 MiSeq #########################################################
-###################################################################################################
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAACGTGATAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAAACATCGAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTATGCCTAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAGTGGTCAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACCACTGTAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACATTGGCAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCAGATCTGAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCATCAAGTAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCGCTGATCAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACAAGCTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGTAGCCAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAGTACAAGAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAACAACCAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAACCGAGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAACGCTTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAAGACGGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAAGGTACAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACACAGAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACAGCAGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACCTCCAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACGCTCGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACGTATCAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTACTATGCAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAGAGTCAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAGATCGCAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAGCAGGAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAGTCACTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTATCCTGTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTATTGAGGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCAACCACAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGACTAGTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCAATGGAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCACTTCGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCAGCGTTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCATACCAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCCAGTTCAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCCGAAGTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCCGTGAGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCCTCCTGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCGAACTTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCGACTGGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCGCATACAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTCAATGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGAGCCAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGGCATAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGAATCTGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCAAGACTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGAGCTGAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGATAGACAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGCCACATAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGCGAGTAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGCTAACGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGCTCGGTAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGGAGAACAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGGTGCGAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGTACGCAAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGTCGTAGAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGTCTGTCAAGGATTAGATACCCTGGTA
-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGTGTTCTAAGGATTAGATACCCTGGTA
-CAAGCAGAAGACGGCATACGAGATGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCRRCACGAGCTGACGAC
-
-###################################################################################################
-#### 20. 16S Adapter + primer V3V4 MiSeq ##########################################################
-###################################################################################################
-# Forward primer
-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG
-# Reverse primer
-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATCC
-
-# 16S Adapter Milieu interieur
-#16Sf (V3F)
-TATGGTAATTGGCCTACGGRAGGCAGCAG
-#16Sr (V4R)
-AGTCAGTCAGCCGGACTACHVGGGTWTCTAAT
-#rc16r
-ATTAGAWACCCBDGTAGTCCGGCTGACTGACT
-
-###################################################################################################
-#### 18S Adapter + Primer MiSeq ###################################################################
-###################################################################################################
-#Forward primer 574
-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCGGTAAYTCCAGCTCYV
-# Reverse primer 1132
-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGCCGTCAATTHCTTYAART
-
-###################################################################################################
-##### ITS Adapter + Primer MiSeq ##################################################################
-###################################################################################################
-# Reverse primer ITS1
-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCTTGGTCATTTAGAGGAAGTAA
-# Reverse primer ITS2
-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGCTGCGTTCTTCATCGATGC
diff --git a/shaman_bioblend.py b/shaman_bioblend.py
index 46ac175c63e1995d65d69253ecf103b3a5a7a994..8e898e5a5fcc6e9de4b8b4efa28fa14973ca7d92 100644
--- a/shaman_bioblend.py
+++ b/shaman_bioblend.py
@@ -35,6 +35,7 @@ import tarfile
import zipfile
import lockfile
import datetime
+import socket
class FullPaths(argparse.Action):
"""Expand user- and relative-paths"""
@@ -418,11 +419,12 @@ class galaxy(Thread):
"attachment; filename= {0}"
.format(os.path.basename(result_file)))
msg.attach(part)
- server = smtplib.SMTP('smtp.pasteur.fr', 587)
- server.starttls()
- text = msg.as_string()
- server.sendmail(fromaddr, toaddr, text)
- server.quit()
+ if socket.gethostname() == "ShinyPro":
+ server = smtplib.SMTP('smtp.pasteur.fr', 587)
+ server.starttls()
+ text = msg.as_string()
+ server.sendmail(fromaddr, toaddr, text)
+ server.quit()
#smtplib.SMTPSenderRefused:
#except IOError:
# self.logger.error("Error cannot open {0}".format(result_file))