Commit 0d158e47 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

Add installation of iqtree

parent 6abe418c
Pipeline #34356 failed with stage
in 8 minutes and 8 seconds
......@@ -16,11 +16,11 @@ RUN pip3 install --upgrade pip
# Update makeblastdb and blastp for prokka
WORKDIR /tmp
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.10.0+/bin/makeblastdb /usr/local/bin/ &&\
cp /tmp/ncbi-blast-2.10.0+/bin/blastp /usr/local/bin/ &&\
rm ncbi-blast-2.10.0+-x64-linux.tar.gz
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.1+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.10.1+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.10.1+/bin/makeblastdb /usr/local/bin/ &&\
cp /tmp/ncbi-blast-2.10.1+/bin/blastp /usr/local/bin/ &&\
rm ncbi-blast-2.10.1+-x64-linux.tar.gz
# Install mash
......
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