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Amandine PERRIN
pipeline_annotation
Commits
0d158e47
Commit
0d158e47
authored
Jul 22, 2020
by
Amandine PERRIN
Browse files
Add installation of iqtree
parent
6abe418c
Pipeline
#34356
failed with stage
in 8 minutes and 8 seconds
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1
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for_tests/Dockerfile
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0d158e47
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@@ -16,11 +16,11 @@ RUN pip3 install --upgrade pip
# Update makeblastdb and blastp for prokka
WORKDIR
/tmp
RUN
wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.
0
+-x64-linux.tar.gz
&&
\
tar
zxvpf ncbi-blast-2.10.
0
+-x64-linux.tar.gz
&&
\
cp
/tmp/ncbi-blast-2.10.
0
+/bin/makeblastdb /usr/local/bin/
&&
\
cp
/tmp/ncbi-blast-2.10.
0
+/bin/blastp /usr/local/bin/
&&
\
rm
ncbi-blast-2.10.
0
+-x64-linux.tar.gz
RUN
wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.
1
+-x64-linux.tar.gz
&&
\
tar
zxvpf ncbi-blast-2.10.
1
+-x64-linux.tar.gz
&&
\
cp
/tmp/ncbi-blast-2.10.
1
+/bin/makeblastdb /usr/local/bin/
&&
\
cp
/tmp/ncbi-blast-2.10.
1
+/bin/blastp /usr/local/bin/
&&
\
rm
ncbi-blast-2.10.
1
+-x64-linux.tar.gz
# Install mash
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