From 1f5223bec55a34f71b0ae53721961a1582c9e3b4 Mon Sep 17 00:00:00 2001 From: Amandine PERRIN <amandine.perrin@pasteur.fr> Date: Thu, 16 Sep 2021 19:44:25 +0200 Subject: [PATCH] add warning genome-name without space --- doc/source/usage.rst | 2 ++ 1 file changed, 2 insertions(+) diff --git a/doc/source/usage.rst b/doc/source/usage.rst index 3adffcdf..36576d15 100755 --- a/doc/source/usage.rst +++ b/doc/source/usage.rst @@ -878,6 +878,8 @@ list_file Your list_file contains the names of all genomes used to generate the persistent genome, 1 genome name per line, without extension. 'align' subcommand will then use the files in ``Proteins`` folder, called ``<genome_name_given>.prt`` and those in ``Genes`` folder, called ``<genome_name_given>.gen`` to do the alignments. ``Proteins`` and ``Genes`` folders are in your given ``<dbdir>``. You can use a file with multiple columns (like the LSTINFO file generated by 'annotate' subcommand), but only the first column will be taken into account. If you use the file generated by annotate step, you can keep it as it is (its header will be recognized). If you create your own file, do not put any header line. +.. warning:: Genome names must not contain any space. + Here is an example of a valid list_file: .. code-block:: text -- GitLab