diff --git a/PanACoTA/utils.py b/PanACoTA/utils.py index 162c00ce4335c763e2a0eb40e2e00def23847496..1931a79219451ee58a21cb48a4fc4f0832455a34 100755 --- a/PanACoTA/utils.py +++ b/PanACoTA/utils.py @@ -484,16 +484,13 @@ def write_lstinfo(list_file, genomes, outdir): """ _, name_lst = os.path.split(list_file) - outlst = os.path.join(outdir, "LSTINFO-" + ".".join(name_lst.split(".")[:-1]) + ".lst") with open(outlst, "w") as outf: outf.write("\t".join(["gembase_name", "orig_name", "to_annotate", "gsize", "nb_conts", "L90"]) + "\n") for genome, values in sorted(genomes.items(), key=sort_genomes_byname_l90_nbcont): gembase, _, to_annote, gsize, nbcont, l90 = [str(x) for x in values] - to_annote_file = os.path.basename(to_annote) - outf.write("\t".join([gembase, genome, to_annote_file, gsize, nbcont, l90]) + "\n") - + outf.write("\t".join([gembase, genome, to_annote, gsize, nbcont, l90]) + "\n") def sort_genomes_by_name(x): """