diff --git a/for_build/annote_and_1tree/Dockerfile b/for_build/annote_and_1tree/Dockerfile index b57e7eade2d95e5a5ea3c666f09280e4d300a9c0..216d1139418424053831b2405a8940a4c28036ba 100644 --- a/for_build/annote_and_1tree/Dockerfile +++ b/for_build/annote_and_1tree/Dockerfile @@ -22,6 +22,11 @@ RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.10.1/ncbi-blast-2 rm ncbi-blast-2.10.1+-x64-linux.tar.gz +# install tbl2asn (used by prokka) +RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ + gunzip tbl2asn.gz &&\ + chmod +x tbl2asn &&\ + ln -s /install_dir/tbl2asn /usr/local/bin # Install dependencies for prokka: WORKDIR /install_dir RUN DEBIAN_FRONTEND="noninteractive" apt install -y\ @@ -35,11 +40,6 @@ RUN DEBIAN_FRONTEND="noninteractive" apt install -y\ RUN echo yes | cpan Bio::SearchIO::hmmer # Install bioperl RUN echo yes | cpan Bio::Perl -# install tbl2asn -RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ - gunzip tbl2asn.gz &&\ - chmod +x tbl2asn &&\ - ln -s /install_dir/tbl2asn /usr/local/bin # Install prokka RUN git clone https://github.com/tseemann/prokka.git diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile index a578332ea2d9c13da8a5ce6ed290d8e53bf38173..2609fed5ed556ecd9f50985014701018817426f5 100644 --- a/for_tests/Dockerfile +++ b/for_tests/Dockerfile @@ -54,6 +54,11 @@ RUN make &&\ make install +# install tbl2asn (used by prokka) +RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ + gunzip tbl2asn.gz &&\ + chmod +x tbl2asn &&\ + ln -s /install_dir/tbl2asn /usr/local/bin # Install dependencies for prokka: WORKDIR /install_dir RUN DEBIAN_FRONTEND="noninteractive" apt install -y\ @@ -67,11 +72,6 @@ RUN DEBIAN_FRONTEND="noninteractive" apt install -y\ RUN echo yes | cpan Bio::SearchIO::hmmer # Install bioperl RUN echo yes | cpan Bio::Perl -# install tbl2asn -RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ - gunzip tbl2asn.gz &&\ - chmod +x tbl2asn &&\ - ln -s /install_dir/tbl2asn /usr/local/bin # Install prokka RUN git clone https://github.com/tseemann/prokka.git