From 2c662e0f55acb2a1dd4c9bb62d8f81f1ce087cc3 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Mon, 12 Oct 2020 16:39:59 +0200
Subject: [PATCH] Start progressbar at 0% instead of N/A%

---
 PanACoTA/annotate_module/annotation_functions.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/PanACoTA/annotate_module/annotation_functions.py b/PanACoTA/annotate_module/annotation_functions.py
index beefeeee..0e608d54 100755
--- a/PanACoTA/annotate_module/annotation_functions.py
+++ b/PanACoTA/annotate_module/annotation_functions.py
@@ -147,8 +147,12 @@ def run_annotation_all(genomes, threads, force, annot_folder, prodigal_only=Fals
                     break
                 # If not done, get number of genomes left
                 remaining = final._number_left
-                # Update progress bar
-                bar.update(nbgen - remaining)
+                # Add this to start progressbar with 0% instead of N/A%
+                if remaining == nbgen:
+                    bar.update(0.0000001)
+                else:
+                    # Update progress bar
+                    bar.update(nbgen - remaining)
             # End progress bar
             bar.finish()
         pool.join()
-- 
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