From 2ed31af641d1c535eac9bf9beca722e8890cab53 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Tue, 5 Sep 2023 09:20:57 +0200
Subject: [PATCH] Update functional tests with new option for mafft
---
test/test_functional/test_align.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/test/test_functional/test_align.py b/test/test_functional/test_align.py
index 586b6b2d..d52e3c76 100755
--- a/test/test_functional/test_align.py
+++ b/test/test_functional/test_align.py
@@ -106,7 +106,7 @@ def test_main():
for fam in fams:
assert f"Checking extractions for family {fam}" in " ".join(log_content)
assert f"Aligning family {fam}" in " ".join(log_content)
- assert ("Mafft command: mafft --auto --anysymbol "
+ assert ("Mafft command: mafft --auto --amino "
"test/data/align/generated_by_func_tests/"
f"Align-TEST4/TEST4-current.{fam}.prt") in " ".join(log_content)
assert f"Back-translating family {fam}" in " ".join(log_content)
--
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