Commit 305b92d3 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

correction installation iqtree

parent e808b1b7
Pipeline #34359 passed with stage
in 8 minutes and 3 seconds
......@@ -22,73 +22,73 @@ build-test-image:
tags:
- k8s
build-install-barrnap:
only:
- docker
stage: build
script:
- apk update #; apk add git
# - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly" for_build/barrnap_only
- docker push "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly"
tags:
- k8s
# build-install-barrnap:
# only:
# - docker
# stage: build
# script:
# - apk update #; apk add git
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly" for_build/barrnap_only
# - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly"
# tags:
# - k8s
build-install-annote-and-quicktree:
only:
- docker
stage: build
script:
- apk update #; apk add git
# - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
- docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
tags:
- k8s
# build-install-annote-and-quicktree:
# only:
# - docker
# stage: build
# script:
# - apk update #; apk add git
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
# - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
# tags:
# - k8s
build-ubuntu:
only:
- docker
stage: build
script:
- apk update # ; apk add git
# - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu" for_build/ubuntu
- docker push "$CI_REGISTRY_IMAGE/install-ubuntu"
tags:
- k8s
# build-ubuntu:
# only:
# - docker
# stage: build
# script:
# - apk update # ; apk add git
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu" for_build/ubuntu
# - docker push "$CI_REGISTRY_IMAGE/install-ubuntu"
# tags:
# - k8s
build-mafft:
only:
- docker
stage: build
script:
- apk update # ; apk add git
# - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-mafft" for_build/mafft
- docker push "$CI_REGISTRY_IMAGE/install-mafft"
tags:
- k8s
# build-mafft:
# only:
# - docker
# stage: build
# script:
# - apk update # ; apk add git
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mafft" for_build/mafft
# - docker push "$CI_REGISTRY_IMAGE/install-mafft"
# tags:
# - k8s
build-mmseqs_and_fastme:
only:
- docker
stage: build
script:
- apk update # ; apk add git
# - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" for_build/mmseqs_and_fastme
- docker push "$CI_REGISTRY_IMAGE/install-mmseqs-fastme"
tags:
- k8s
# build-mmseqs_and_fastme:
# only:
# - docker
# stage: build
# script:
# - apk update # ; apk add git
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" for_build/mmseqs_and_fastme
# - docker push "$CI_REGISTRY_IMAGE/install-mmseqs-fastme"
# tags:
# - k8s
build-install-prodigal:
only:
- docker
stage: build
script:
- apk update
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-prodigal" for_build/prodigal
- docker push "$CI_REGISTRY_IMAGE/install-prodigal"
tags:
- k8s
# build-install-prodigal:
# only:
# - docker
# stage: build
# script:
# - apk update
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-prodigal" for_build/prodigal
# - docker push "$CI_REGISTRY_IMAGE/install-prodigal"
# tags:
# - k8s
......@@ -102,9 +102,18 @@ WORKDIR quicktree
RUN make &&\
ln -s /tmp/quicktree/quicktree /usr/local/bin
# Install iqtree
WORKDIR /tmp
RUN wget https://github.com/Cibiv/IQ-TREE/releases/download/v1.6.12/iqtree-1.6.12-Linux.tar.gz
RUN tar -xzf iqtree-1.6.12-Linux.tar.gz &&\
rm iqtree-1.6.12-Linux.tar.gz &&\
l -s /tmp/iqtree-1.6.12-Linux/bin/iqtree /usr/local/bin
ln -s /tmp/iqtree-1.6.12-Linux/bin/iqtree /usr/local/bin
# Install iqtree2
WORKDIR /tmp
RUN wget https://github.com/Cibiv/IQ-TREE/releases/download/v2.0.6/iqtree-2.0.6-Linux.tar.gz
RUN tar -xzf iqtree-2.0.6-Linux.tar.gz &&\
rm iqtree-2.0.6-Linux.tar.gz &&\
ln -s /tmp/iqtree-2.0.6-Linux/bin/iqtree2 /usr/local/bin
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment