diff --git a/COPYRIGHT b/COPYRIGHT index cb8ae7dc5f644c12b6faa2b3544f22c32c7ad08f..42641253da926b69e5ee06052e363c53ca8d77a5 100644 --- a/COPYRIGHT +++ b/COPYRIGHT @@ -1,10 +1,10 @@ -PanACOTA - PanACOTA is a software providing tools for large scale bacterial comparative genomics. From a set of complete and/or draft genomes, you can: +PanACoTA (PANgenome with Annotations, COre identification, Tree and corresponding Alignments) is a software providing tools for large scale bacterial comparative genomics. You can download all refseq genomes for a given species, or use your set of complete and/or draft genomes, to: - - Do a quality control of your strains, to eliminate poor quality genomes, which would not give any information for the comparative study - - Uniformly annotate all genomes - - Do a Pan-genome - - Do a Core or Persistent genome - - Align all Core/Persistent families - - Infer a phylogenetic tree from the Core/Persistent families +- Do a quality control of your strains, to eliminate poor quality genomes, which would not give any information for the comparative study +- Uniformly annotate all genomes (with functional annotation, or only syntactic annotation, according to your needs) +- Do a Pan-genome +- Do a Core or Persistent genome +- Align all Core/Persistent families +- Infer a phylogenetic tree from the Core/Persistent families -Copyright © 2016-2018 Institut Pasteur (Paris). +Copyright © 2020 Institut Pasteur (Paris).