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-PanACOTA - PanACOTA is a software providing tools for large scale bacterial comparative genomics. From a set of complete and/or draft genomes, you can:
+PanACoTA  (PANgenome with Annotations, COre identification, Tree and corresponding Alignments) is a software providing tools for large scale bacterial comparative genomics. You can download all refseq genomes for a given species, or use your set of complete and/or draft genomes, to:
 
-   -  Do a quality control of your strains, to eliminate poor quality genomes, which would not give any information for the comparative study
-   -  Uniformly annotate all genomes
-   -  Do a Pan-genome
-   -  Do a Core or Persistent genome
-   -  Align all Core/Persistent families
-   -  Infer a phylogenetic tree from the Core/Persistent families
+- Do a quality control of your strains, to eliminate poor quality genomes, which would not give any information for the comparative study
+- Uniformly annotate all genomes (with functional annotation, or only syntactic annotation, according to your needs)
+- Do a Pan-genome
+- Do a Core or Persistent genome
+- Align all Core/Persistent families
+- Infer a phylogenetic tree from the Core/Persistent families
 
-Copyright © 2016-2018 Institut Pasteur (Paris).
+Copyright © 2020 Institut Pasteur (Paris).