diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile index c758d43394987dea97d834d7a9d4ec2135425619..a578332ea2d9c13da8a5ce6ed290d8e53bf38173 100644 --- a/for_tests/Dockerfile +++ b/for_tests/Dockerfile @@ -54,7 +54,7 @@ RUN make &&\ make install -# Install prokka: +# Install dependencies for prokka: WORKDIR /install_dir RUN DEBIAN_FRONTEND="noninteractive" apt install -y\ libdatetime-perl \ @@ -63,8 +63,17 @@ RUN DEBIAN_FRONTEND="noninteractive" apt install -y\ hmmer \ default-jre \ bioperl +# Install hmmer RUN echo yes | cpan Bio::SearchIO::hmmer +# Install bioperl RUN echo yes | cpan Bio::Perl +# install tbl2asn +RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ + gunzip tbl2asn.gz &&\ + chmod +x tbl2asn &&\ + ln -s /install_dir/tbl2asn /usr/local/bin + +# Install prokka RUN git clone https://github.com/tseemann/prokka.git RUN /install_dir/prokka/bin/prokka --setupdb &&\ ln -s /install_dir/prokka/bin/prokka /usr/local/bin