From 3f0bc2fffb0cbc886e5e4863cd2a60e5e80cd645 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Fri, 22 Jan 2021 19:34:16 +0100
Subject: [PATCH] test that fasttree is installed on test image
---
test/test_install/test_make_all-installed.py | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/test/test_install/test_make_all-installed.py b/test/test_install/test_make_all-installed.py
index 96fb32f1..36654bb4 100755
--- a/test/test_install/test_make_all-installed.py
+++ b/test/test_install/test_make_all-installed.py
@@ -43,12 +43,14 @@ def test_install_panacota():
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("mash")
+ assert utils.check_installed("FastTreeMP")
# Install panacota
utils.run_cmd(cmd, error)
assert utils.check_installed("PanACoTA")
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("mash")
+ assert utils.check_installed("FastTreeMP")
# Check that panacota is installed (pip3 module exists)
assert utils.is_package_installed("PanACoTA")
# Check that it is installed in "final mode"
@@ -89,6 +91,7 @@ def test_upgrade(install_panacota):
"""
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
+ assert utils.check_installed("FastTreeMP")
assert utils.check_installed("PanACoTA")
# Upgrade PanACoTA
cmd = "python3 make upgrade"
@@ -97,6 +100,7 @@ def test_upgrade(install_panacota):
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
+ assert utils.check_installed("FastTreeMP")
logfile = "install.log"
with open(logfile, "r") as logf:
lines = logf.readlines()
@@ -113,6 +117,7 @@ def test_upgrade_notinstalled():
"""
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
+ assert utils.check_installed("FastTreeMP")
assert not utils.check_installed("PanACoTA")
cmd = "python3 make upgrade"
error = "Error upgrade"
@@ -120,6 +125,7 @@ def test_upgrade_notinstalled():
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
+ assert utils.check_installed("FastTreeMP")
logfile = "install.log"
with open(logfile, "r") as logf:
lines = logf.readlines()
@@ -137,6 +143,7 @@ def test_uninstall(install_panacota):
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
+ assert utils.check_installed("FastTreeMP")
cmd = "python3 make uninstall"
error = "Error uninstalling"
utils.run_cmd(cmd, error)
@@ -144,6 +151,7 @@ def test_uninstall(install_panacota):
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("mash")
+ assert utils.check_installed("FastTreeMP")
assert utils.check_installed("quicktree")
assert utils.check_installed("iqtree") or utils.check_installed("iqtree2")
logfile = "install.log"
@@ -217,10 +225,12 @@ def test_install_user():
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert not utils.check_installed("PanACoTA")
+ assert utils.check_installed("FastTreeMP")
utils.run_cmd(cmd, error)
assert utils.check_installed("barrnap")
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
+ assert utils.check_installed("FastTreeMP")
# Check logfile content
logfile = "install.log"
content = ["Installing PanACoTA in user mode...", "DONE"]
--
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