From 3f740c9424a119116c7fc6fb226f0dbc09aac0bc Mon Sep 17 00:00:00 2001
From: aperrin <amandine.perrin@pasteur.fr>
Date: Fri, 8 Dec 2017 11:52:39 +0100
Subject: [PATCH] Add FastTreeMP installation

---
 for_tests/Dockerfile | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile
index 634dcf44..501a2ebc 100644
--- a/for_tests/Dockerfile
+++ b/for_tests/Dockerfile
@@ -57,4 +57,11 @@ RUN wget https://mafft.cbrc.jp/alignment/software/mafft-7.313-with-extensions-sr
 WORKDIR /tmp/mafft-7.313-with-extensions/core
 RUN make clean &&\
     make &&\
-    make install
\ No newline at end of file
+    make install
+
+# Install FastTree
+WORKDIR /tmp
+RUN wget http://www.microbesonline.org/fasttree/FastTree.c &&\
+    gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP FastTree.c -lm &&\
+    ln -s /tmp/FastTreeMP /usr/local/bin
+    
-- 
GitLab