From 404628f32445799f2be1358e57396a231060986a Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Thu, 7 Sep 2023 11:46:04 +0200
Subject: [PATCH] uninstall panacota before testing installation
---
test/test_install/test_make_prokka-quicktree.py | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/test/test_install/test_make_prokka-quicktree.py b/test/test_install/test_make_prokka-quicktree.py
index 569c2d3..1382c32 100755
--- a/test/test_install/test_make_prokka-quicktree.py
+++ b/test/test_install/test_make_prokka-quicktree.py
@@ -134,6 +134,9 @@ def test_develop():
"""
Test installing PanACoTA in developer mode, when prokka and barrnap are already installed
"""
+ cmd = "python3 make uninstall"
+ error = "Error trying to uninstall PanACoTa"
+ utils.run_cmd(cmd, error)
assert not utils.check_installed("PanACoTA")
assert not utils.check_installed("barrnap")
assert utils.check_installed('quicktree')
@@ -191,6 +194,9 @@ def test_install_user():
Test that when installing from a computer containing only prokka, in user mode, it installs
PanACoTA in /Users and returns list of dependencies
"""
+ cmd = "python3 make uninstall"
+ error = "Error trying to uninstall PanACoTa"
+ utils.run_cmd(cmd, error)
assert not utils.check_installed("barrnap")
assert not utils.check_installed("mash")
assert utils.check_installed("prokka")
--
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