diff --git a/for_build/annote_and_1tree/Dockerfile b/for_build/annote_and_1tree/Dockerfile index 216d1139418424053831b2405a8940a4c28036ba..a8bfb7ce79aa02f23b7fd56104c7c55fba7e3674 100644 --- a/for_build/annote_and_1tree/Dockerfile +++ b/for_build/annote_and_1tree/Dockerfile @@ -22,11 +22,6 @@ RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.10.1/ncbi-blast-2 rm ncbi-blast-2.10.1+-x64-linux.tar.gz -# install tbl2asn (used by prokka) -RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ - gunzip tbl2asn.gz &&\ - chmod +x tbl2asn &&\ - ln -s /install_dir/tbl2asn /usr/local/bin # Install dependencies for prokka: WORKDIR /install_dir RUN DEBIAN_FRONTEND="noninteractive" apt install -y\ @@ -46,6 +41,12 @@ RUN git clone https://github.com/tseemann/prokka.git RUN /install_dir/prokka/bin/prokka --setupdb &&\ ln -s /install_dir/prokka/bin/prokka /usr/local/bin +# install tbl2asn (used by prokka) +RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ + gunzip tbl2asn.gz &&\ + chmod +x tbl2asn &&\ + ln -s /install_dir/tbl2asn /usr/local/bin + RUN rm /usr/bin/mafft # remove mafft installed with bioperl diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile index 7bf6a539899a86332b62ae84232311eb772cf986..27f9f2bf5140fb9c384d43db0e928351a181ca7e 100644 --- a/for_tests/Dockerfile +++ b/for_tests/Dockerfile @@ -54,11 +54,6 @@ RUN make &&\ make install -# install tbl2asn (used by prokka) -RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ - gunzip tbl2asn.gz &&\ - chmod +x tbl2asn &&\ - ln -s /install_dir/tbl2asn /usr/local/bin # Install dependencies for prokka: WORKDIR /install_dir RUN DEBIAN_FRONTEND="noninteractive" apt install -y\ @@ -77,6 +72,11 @@ RUN echo yes | cpan Bio::Perl RUN git clone https://github.com/tseemann/prokka.git RUN /install_dir/prokka/bin/prokka --setupdb &&\ ln -s /install_dir/prokka/bin/prokka /usr/local/bin +# install tbl2asn (used by prokka) +RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ + gunzip tbl2asn.gz &&\ + chmod +x tbl2asn &&\ + ln -s /install_dir/tbl2asn /usr/local/bin # Install MMseqs2 Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e