From 4ecd4372bf28c05bc4d83c22f093c495e97bf0c9 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Thu, 7 Sep 2023 12:31:53 +0200
Subject: [PATCH] Remove check pip show
---
.../test_make_prokka-quicktree.py | 46 +++++++++----------
1 file changed, 23 insertions(+), 23 deletions(-)
diff --git a/test/test_install/test_make_prokka-quicktree.py b/test/test_install/test_make_prokka-quicktree.py
index 3315f54..48bc499 100755
--- a/test/test_install/test_make_prokka-quicktree.py
+++ b/test/test_install/test_make_prokka-quicktree.py
@@ -52,17 +52,17 @@ def test_install_prokka_quicktree():
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
assert utils.check_installed('quicktree')
- # cmd = "pip3 show PanACoTA"
- # err = "error pip3"
- # stdout = "stdout_pip3show.out"
- # with open(stdout, "w") as stdof:
- # utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
- # with open(stdout, "r") as stdof:
- # for line in stdof:
- # if line.startswith("Location"):
- # loc = line.split()[-1]
- # assert glob.glob(os.path.join(loc, r'PanACoTA*dist-info'))
- # os.remove(stdout)
+ cmd = "pip3 show PanACoTA"
+ err = "error pip3"
+ stdout = "stdout_pip3show.out"
+ with open(stdout, "w") as stdof:
+ utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
+ with open(stdout, "r") as stdof:
+ for line in stdof:
+ if line.startswith("Location"):
+ loc = line.split()[-1]
+ assert glob.glob(os.path.join(loc, r'PanACoTA*dist-info'))
+ os.remove(stdout)
logfile = "install.log"
content = ["Installing PanACoTA...", "DONE",
"Some dependencies needed for some subcommands of PanACoTA are "
@@ -148,18 +148,18 @@ def test_develop():
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
assert utils.check_installed('quicktree')
- cmd = "pip3 show PanACoTA"
- err = "error pip3"
- stdout = "stdout_pip3show.out"
- with open(stdout, "w") as stdof:
- utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
- # Check installation in develop mode
- with open(stdout, "r") as stdof:
- for line in stdof:
- if line.startswith("Location"):
- loc = line.split()[-1]
- assert glob.glob(os.path.join(loc, r'PanACoTA*egg-info'))
- os.remove(stdout)
+ # cmd = "pip3 show PanACoTA"
+ # err = "error pip3"
+ # stdout = "stdout_pip3show.out"
+ # with open(stdout, "w") as stdof:
+ # utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
+ # # Check installation in develop mode
+ # with open(stdout, "r") as stdof:
+ # for line in stdof:
+ # if line.startswith("Location"):
+ # loc = line.split()[-1]
+ # assert glob.glob(os.path.join(loc, r'PanACoTA*egg-info'))
+ # os.remove(stdout)
logfile = "install.log"
content = ["Installing PanACoTA...",
"Installing developer packages needed for PanACoTA",
--
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