From 5026f90a1eb0fbcc63892ce524c10f1cb26bc04e Mon Sep 17 00:00:00 2001 From: Amandine PERRIN <amandine.perrin@pasteur.fr> Date: Wed, 2 Sep 2020 11:49:55 +0200 Subject: [PATCH] update tests for annotation function for prokka --- .../test_annotate/test_annotation_functions-prokka.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/test/test_unit/test_annotate/test_annotation_functions-prokka.py b/test/test_unit/test_annotate/test_annotation_functions-prokka.py index 9491ab48..6abac82d 100644 --- a/test/test_unit/test_annotate/test_annotation_functions-prokka.py +++ b/test/test_unit/test_annotate/test_annotation_functions-prokka.py @@ -325,7 +325,7 @@ def test_check_prokka_wrong_cont(): nbcont = 10 assert not afunc.check_prokka(outdir, logf, name, gpath, nbcont, logger[1]) msg = ("prokka_out_for_test original_name.fna: no matching number of contigs; " - "nbcontig=10; in tbl =7") + "nbcontig=10; in tbl =6") q = logger[0] assert q.qsize() == 1 assert q.get().message == msg @@ -421,7 +421,7 @@ def test_check_prokka_tbl_crispr_newversion(): shutil.copyfile(ffnfile, os.path.join(out_dir, name + ".ffn")) logf = os.path.join(GENEPATH, "prokka.log") gpath = "path/to/nogenome/original_name.fna" - nbcont = 7 + nbcont = 6 assert afunc.check_prokka(out_dir, logf, name, gpath, nbcont, logger[1]) @@ -435,7 +435,7 @@ def test_check_prokka_ok(): name = "prokka_out_for_test" logf = os.path.join(GENEPATH, "prokka.log") gpath = "path/to/nogenome/original_name.fna" - nbcont = 7 + nbcont = 6 assert afunc.check_prokka(outdir, logf, name, gpath, nbcont, logger[1]) @@ -450,7 +450,7 @@ def test_run_prokka_out_exists_ok(): cores_prokka = 1 name = "prokka_out_for_test" force = False - nbcont = 7 + nbcont = 6 arguments = (gpath, TEST_DIR, cores_prokka, name, force, nbcont, None, logger[0]) assert afunc.run_prokka(arguments) @@ -491,7 +491,7 @@ def test_run_prokka_out_exists_error(): gpath = "path/to/nogenome/original_name-error" cores_prokka = 1 force = False - nbcont = 7 + nbcont = 6 arguments = (gpath, GENEPATH, cores_prokka, name, force, nbcont, None, logger[0]) assert not afunc.run_prokka(arguments) q = logger[0] -- GitLab