From 55273dc3652c719a415fc58dfa0fc10c0ea9a603 Mon Sep 17 00:00:00 2001
From: aperrin <amandine.perrin@pasteur.fr>
Date: Sun, 21 May 2017 18:09:50 +0200
Subject: [PATCH] Add installation of mmseqs in test machine
---
for_tests/Dockerfile | 12 +++++++++++-
1 file changed, 11 insertions(+), 1 deletion(-)
diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile
index 12fe2a65..8c183ef1 100644
--- a/for_tests/Dockerfile
+++ b/for_tests/Dockerfile
@@ -7,7 +7,8 @@ RUN apt-get update &&\
# Install package needed
RUN apt-get install -y \
wget \
- python3-pip
+ python3-pip \
+ cmake # to install mmseqs
# Update pip
RUN pip3 install --upgrade pip
@@ -33,3 +34,12 @@ RUN apt-get install -y\
RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
+
+# Install mmseqs2
+WORKDIR /tmp
+RUN git clone https://github.com/soedinglab/MMseqs2.git
+WORKDIR /tmp/MMseqs2
+RUN mkdir build && cd build
+RUN cmake -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_INSTALL_PREFIX=. ..
+RUN make && make install
+RUN ln -s /tmp/MMseqs2/build/bin/mmseqs /usr/local/bin
--
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