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Amandine PERRIN
pipeline_annotation
Commits
5bf109e5
Commit
5bf109e5
authored
Dec 17, 2021
by
Amandine PERRIN
Browse files
debug functional test
parent
c164bc04
Pipeline
#71703
failed with stages
in 5 minutes and 17 seconds
Changes
1
Pipelines
1
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Inline
Side-by-side
test/test_functional/test_prepare.py
View file @
5bf109e5
...
...
@@ -235,6 +235,8 @@ def test_main_only_strainname_file():
assert
nbgenomes
>=
3
# Check logfiles are here
log_files
=
glob
.
glob
(
os
.
path
.
join
(
GENEPATH
,
"*log*"
))
print
(
os
.
listdir
(
ngd_outdir
))
print
(
log_files
)
assert
len
(
log_files
)
==
nbgenomes
# Check tmp files folder created, with the 3 strain files
tmp_files
=
glob
.
glob
(
os
.
path
.
join
(
tmp_dir
,
"*.fna_prepare-split5N.fna"
))
...
...
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