From 6282ecd2384bf1f04c138d9d74c23ddd449ffc44 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Thu, 30 Jan 2020 09:55:45 +0100
Subject: [PATCH] install last version of blastp
---
for_tests/Dockerfile | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile
index ee3e39bb..3c701d8f 100644
--- a/for_tests/Dockerfile
+++ b/for_tests/Dockerfile
@@ -15,10 +15,10 @@ RUN pip3 install --upgrade pip
# Update makeblastdb for prokka
WORKDIR /tmp
-RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
- tar zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
- cp /tmp/ncbi-blast-2.9.0+/bin/makeblastdb /usr/local/bin/ &&\
- rm ncbi-blast-2.9.0+-x64-linux.tar.gz
+RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
+ tar zxvpf ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
+ cp /tmp/ncbi-blast-2.10.0+/bin/makeblastdb /usr/local/bin/ &&\
+ rm ncbi-blast-2.10.0+-x64-linux.tar.gz
# Install mash
@@ -42,6 +42,7 @@ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
# Install prokka:
WORKDIR /tmp
+RUN echo blastp --version
RUN apt-get install -y\
libdatetime-perl \
libxml-simple-perl \
--
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