From 647a117b42a03561c81e5513e038db162fc81393 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Tue, 5 Oct 2021 11:15:46 +0200
Subject: [PATCH] gff headers with 1 space instead of 2
---
PanACoTA/annotate_module/format_prodigal.py | 2 +-
PanACoTA/annotate_module/format_prokka.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/PanACoTA/annotate_module/format_prodigal.py b/PanACoTA/annotate_module/format_prodigal.py
index 30679831..76d6b124 100644
--- a/PanACoTA/annotate_module/format_prodigal.py
+++ b/PanACoTA/annotate_module/format_prodigal.py
@@ -358,7 +358,7 @@ def create_gff(gpath, gff_file, res_gff_file, res_lst_file, contigs, sizes):
# open lst file to read all information saved from prodigal results
with open(gff_file, 'r') as gf, open(res_gff_file, "w") as rgf, open(res_lst_file, "r") as rlf:
# Write headers of gff3 file
- rgf.write("##gff-version 3\n")
+ rgf.write("##gff-version 3\n")
for ori_name, new_name in contigs.items():
# Write the list of contigs, with their size
end = sizes[new_name]
diff --git a/PanACoTA/annotate_module/format_prokka.py b/PanACoTA/annotate_module/format_prokka.py
index ec9e4fd4..ba299738 100644
--- a/PanACoTA/annotate_module/format_prokka.py
+++ b/PanACoTA/annotate_module/format_prokka.py
@@ -411,7 +411,7 @@ def generate_gff(gpath, prokka_gff_file, res_gff_file, res_lst_file, sizes, cont
with open(prokka_gff_file, "r") as prokf, open(res_lst_file, "r") as lstf, \
open(res_gff_file, "w") as gfff:
# Write headers of gff3 file
- gfff.write("##gff-version 3\n")
+ gfff.write("##gff-version 3\n")
# Write all sequences with their size. Order by name in gembase format
for old, new in sorted(contigs.items(), key=lambda items:items[1]):
end = sizes[new]
--
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