diff --git a/for_build/barrnap_only/Dockerfile b/for_build/barrnap_only/Dockerfile index becaf686b253443c70c0ae06ec1ade08d2735cc4..5ddd5e61fb8670c7cb05df0730e99e48521f644d 100644 --- a/for_build/barrnap_only/Dockerfile +++ b/for_build/barrnap_only/Dockerfile @@ -1,4 +1,4 @@ -from ubuntu:16.04 +from ubuntu:latest # Update apt-get packages RUN apt-get update &&\ @@ -6,18 +6,19 @@ RUN apt-get update &&\ # Install package needed RUN apt-get install -y \ - wget \ + python3 \ python3-pip \ + git \ + wget \ libdatetime-perl \ libxml-simple-perl \ libdigest-md5-perl \ - git \ default-jre \ bioperl -# Update pip RUN pip3 install --upgrade pip + # Install barrnap WORKDIR /tmp RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\ diff --git a/for_build/mafft/Dockerfile b/for_build/mafft/Dockerfile index c93e4ce4f97a3400529c78ec8ca7e849b8856173..12d94b00023ffed26717f18bca4d22f519a662a9 100644 --- a/for_build/mafft/Dockerfile +++ b/for_build/mafft/Dockerfile @@ -1,4 +1,4 @@ -from ubuntu:16.04 +from ubuntu:latest # Update apt-get packages RUN apt-get update &&\ @@ -6,20 +6,20 @@ RUN apt-get update &&\ # Install package needed RUN apt-get install -y \ + python3 \ + python3-pip \ wget \ - python3-pip - -# Update pip -RUN pip3 install --upgrade pip - -RUN apt-get install -y\ + git \ libdatetime-perl \ libxml-simple-perl \ libdigest-md5-perl \ - git \ default-jre \ bioperl +# Update pip +RUN pip3 install --upgrade pip + + # Install mafft 7.313 RUN rm /usr/bin/mafft # remove mafft installed with bioperl WORKDIR /tmp @@ -29,4 +29,4 @@ RUN wget https://mafft.cbrc.jp/alignment/software/mafft-7.313-with-extensions-sr WORKDIR /tmp/mafft-7.313-with-extensions/core RUN make clean &&\ make &&\ - make install \ No newline at end of file + make install diff --git a/for_build/mmseqs_and_fastme/Dockerfile b/for_build/mmseqs_and_fastme/Dockerfile index 38fb8e68c05c76f0a4e299bdcd884f509e5ab8ef..67d49924fa9b3587cd0d7fe93e6c40a91e72c4ad 100644 --- a/for_build/mmseqs_and_fastme/Dockerfile +++ b/for_build/mmseqs_and_fastme/Dockerfile @@ -1,4 +1,4 @@ -from ubuntu:16.04 +from ubuntu:latest # Update apt-get packages @@ -9,7 +9,9 @@ RUN apt-get update &&\ # Install package needed and update pip RUN apt-get install -y \ wget \ - python3-pip + python3 \ + python3-pip \ + git RUN pip3 install --upgrade pip