From 83450be6c68ae47235119d0b393abd4cfa40e9a5 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Thu, 7 Sep 2023 14:59:04 +0200
Subject: [PATCH] update test barrnap
---
test/test_install/test_make_barrnap.py | 19 +++++++++----------
1 file changed, 9 insertions(+), 10 deletions(-)
diff --git a/test/test_install/test_make_barrnap.py b/test/test_install/test_make_barrnap.py
index ab840750..d37c83c1 100755
--- a/test/test_install/test_make_barrnap.py
+++ b/test/test_install/test_make_barrnap.py
@@ -36,6 +36,9 @@ def test_install():
Test that when installing from a computer containing only barrnap, it installs
PanACoTA, and returns the list of missing dependencies
"""
+ cmd = "python3 make uninstall"
+ error = "Error trying to uninstall PanACoTa"
+ utils.run_cmd(cmd, error)
cmd = "python3 make"
error = "Error trying to install PanACoTA from base"
assert utils.check_installed("barrnap")
@@ -132,6 +135,9 @@ def test_develop():
"""
Test installing PanACoTA in developer mode, when barrnap is already installed
"""
+ cmd = "python3 make uninstall"
+ error = "Error trying to uninstall PanACoTa"
+ utils.run_cmd(cmd, error)
assert not utils.check_installed("PanACoTA")
assert utils.check_installed("barrnap")
assert not utils.check_installed("prokka")
@@ -142,16 +148,6 @@ def test_develop():
assert utils.check_installed("barrnap")
assert not utils.check_installed("prokka")
cmd = "pip3 show PanACoTA"
- err = "error pip3"
- stdout = "stdout_pip3show.out"
- with open(stdout, "w") as stdof:
- utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
- with open(stdout, "r") as stdof:
- for line in stdof:
- if line.startswith("Location"):
- loc = line.split()[-1]
- assert glob.glob(os.path.join(loc, r'PanACoTA*egg-info'))
- os.remove(stdout)
logfile = "install.log"
content = ["Installing developer packages needed for PanACoTA",
"Some dependencies needed for some subcommands of PanACoTA are "
@@ -188,6 +184,9 @@ def test_install_user():
Test that when installing from a computer in user mode, it really installs
PanACoTA in user mode
"""
+ cmd = "python3 make uninstall"
+ error = "Error trying to uninstall PanACoTa"
+ utils.run_cmd(cmd, error)
assert utils.check_installed("barrnap")
assert not utils.check_installed("prokka")
assert not utils.check_installed("PanACoTA")
--
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