From 842a93d264d6538781a3df52a92a4ac6b4070ac6 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Tue, 30 Apr 2019 10:25:38 +0200
Subject: [PATCH] Adapt dockerfile to buid installation of mafft
---
for_build/mafft/Dockerfile | 15 +++++++++------
1 file changed, 9 insertions(+), 6 deletions(-)
diff --git a/for_build/mafft/Dockerfile b/for_build/mafft/Dockerfile
index 12d94b00..5270a5f9 100644
--- a/for_build/mafft/Dockerfile
+++ b/for_build/mafft/Dockerfile
@@ -9,16 +9,19 @@ RUN apt-get install -y \
python3 \
python3-pip \
wget \
- git \
- libdatetime-perl \
- libxml-simple-perl \
- libdigest-md5-perl \
- default-jre \
- bioperl
+ git
+
# Update pip
RUN pip3 install --upgrade pip
+# Install packages to install mafft
+RUN apt-get install -y \
+ libdatetime-perl \
+ libxml-simple-perl \
+ libdigest-md5-perl \
+ default-jre \
+ bioperl
# Install mafft 7.313
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
--
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