From 874291a0701e13edd3f94c70dcddce72af2b7c28 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Thu, 5 Dec 2019 11:37:06 +0100
Subject: [PATCH] remove old results of annotation step
---
.../1-res-Annotate/Genes/EXAM.0219.00001.gen | 169 ---
.../1-res-Annotate/Genes/EXAM.1216.00002.gen | 158 --
.../1-res-Annotate/Genes/GEN2.0219.00001.gen | 185 ---
.../1-res-Annotate/Genes/GEN4.1111.00001.gen | 128 --
.../1-res-Annotate/LSTINFO-list_genomes.lst | 5 -
.../LSTINFO/EXAM.0219.00001.lst | 11 -
.../LSTINFO/EXAM.1216.00002.lst | 12 -
.../LSTINFO/GEN2.0219.00001.lst | 13 -
.../LSTINFO/GEN4.1111.00001.lst | 9 -
.../Proteins/EXAM.0219.00001.prt | 69 -
.../Proteins/EXAM.1216.00002.prt | 66 -
.../Proteins/GEN2.0219.00001.prt | 77 -
.../Proteins/GEN4.1111.00001.prt | 52 -
.../1-res-Annotate/QC_L90-list_genomes.png | Bin 15571 -> 0 bytes
.../QC_nb-contigs-list_genomes.png | Bin 17958 -> 0 bytes
.../Replicons/EXAM.0219.00001.fna | 4 -
.../Replicons/EXAM.1216.00002.fna | 6 -
.../Replicons/GEN2.0219.00001.fna | 8 -
.../Replicons/GEN4.1111.00001.fna | 2 -
.../1-res-Annotate/discarded-list_genomes.lst | 1 -
.../genomeAPCAT-annotate_list_genomes.log | 9 -
...omeAPCAT-annotate_list_genomes.log.details | 32 -
.../genomeAPCAT-annotate_list_genomes.log.err | 0
.../1-res-Annotate/gff3/EXAM.0219.00001.gff | 12 -
.../1-res-Annotate/gff3/EXAM.1216.00002.gff | 13 -
.../1-res-Annotate/gff3/GEN2.0219.00001.gff | 14 -
.../1-res-Annotate/gff3/GEN4.1111.00001.gff | 10 -
.../tmp_files/genome1.fst-split5N.fna | 4 -
.../genome1.fst-split5N.fna-prokka.log | 121 --
.../EXAM.0219.00001.err | 126 --
.../EXAM.0219.00001.faa | 69 -
.../EXAM.0219.00001.ffn | 169 ---
.../EXAM.0219.00001.fna | 167 ---
.../EXAM.0219.00001.fsa | 167 ---
.../EXAM.0219.00001.gbk | 346 -----
.../EXAM.0219.00001.gff | 182 ---
.../EXAM.0219.00001.log | 121 --
.../EXAM.0219.00001.sqn | 1042 -------------
.../EXAM.0219.00001.tbl | 71 -
.../EXAM.0219.00001.tsv | 12 -
.../EXAM.0219.00001.txt | 4 -
.../tmp_files/genome2.fst-split5N.fna | 8 -
.../genome2.fst-split5N.fna-prokka.log | 119 --
.../GEN2.0219.00001.err | 146 --
.../GEN2.0219.00001.faa | 77 -
.../GEN2.0219.00001.ffn | 185 ---
.../GEN2.0219.00001.fna | 184 ---
.../GEN2.0219.00001.fsa | 184 ---
.../GEN2.0219.00001.gbk | 415 ------
.../GEN2.0219.00001.gff | 203 ---
.../GEN2.0219.00001.log | 119 --
.../GEN2.0219.00001.sqn | 1318 -----------------
.../GEN2.0219.00001.tbl | 82 -
.../GEN2.0219.00001.tsv | 14 -
.../GEN2.0219.00001.txt | 4 -
.../tmp_files/genome3-chromo.fst-all.fna | 25 -
.../genome3-chromo.fst-all.fna-split5N.fna | 6 -
...-chromo.fst-all.fna-split5N.fna-prokka.log | 121 --
.../EXAM.1216.00002.err | 133 --
.../EXAM.1216.00002.faa | 66 -
.../EXAM.1216.00002.ffn | 158 --
.../EXAM.1216.00002.fna | 151 --
.../EXAM.1216.00002.fsa | 151 --
.../EXAM.1216.00002.gbk | 350 -----
.../EXAM.1216.00002.gff | 168 ---
.../EXAM.1216.00002.log | 121 --
.../EXAM.1216.00002.sqn | 1159 ---------------
.../EXAM.1216.00002.tbl | 75 -
.../EXAM.1216.00002.tsv | 13 -
.../EXAM.1216.00002.txt | 4 -
.../tmp_files/genome4.fst-split5N.fna | 2 -
.../genome4.fst-split5N.fna-prokka.log | 119 --
.../GEN4.1111.00001.err | 102 --
.../GEN4.1111.00001.faa | 52 -
.../GEN4.1111.00001.ffn | 128 --
.../GEN4.1111.00001.fna | 120 --
.../GEN4.1111.00001.fsa | 120 --
.../GEN4.1111.00001.gbk | 254 ----
.../GEN4.1111.00001.gff | 132 --
.../GEN4.1111.00001.log | 119 --
.../GEN4.1111.00001.sqn | 798 ----------
.../GEN4.1111.00001.tbl | 57 -
.../GEN4.1111.00001.tsv | 10 -
.../GEN4.1111.00001.txt | 4 -
84 files changed, 11442 deletions(-)
delete mode 100644 Examples/1-res-Annotate/Genes/EXAM.0219.00001.gen
delete mode 100644 Examples/1-res-Annotate/Genes/EXAM.1216.00002.gen
delete mode 100644 Examples/1-res-Annotate/Genes/GEN2.0219.00001.gen
delete mode 100644 Examples/1-res-Annotate/Genes/GEN4.1111.00001.gen
delete mode 100644 Examples/1-res-Annotate/LSTINFO-list_genomes.lst
delete mode 100644 Examples/1-res-Annotate/LSTINFO/EXAM.0219.00001.lst
delete mode 100644 Examples/1-res-Annotate/LSTINFO/EXAM.1216.00002.lst
delete mode 100644 Examples/1-res-Annotate/LSTINFO/GEN2.0219.00001.lst
delete mode 100644 Examples/1-res-Annotate/LSTINFO/GEN4.1111.00001.lst
delete mode 100644 Examples/1-res-Annotate/Proteins/EXAM.0219.00001.prt
delete mode 100644 Examples/1-res-Annotate/Proteins/EXAM.1216.00002.prt
delete mode 100644 Examples/1-res-Annotate/Proteins/GEN2.0219.00001.prt
delete mode 100644 Examples/1-res-Annotate/Proteins/GEN4.1111.00001.prt
delete mode 100644 Examples/1-res-Annotate/QC_L90-list_genomes.png
delete mode 100644 Examples/1-res-Annotate/QC_nb-contigs-list_genomes.png
delete mode 100644 Examples/1-res-Annotate/Replicons/EXAM.0219.00001.fna
delete mode 100644 Examples/1-res-Annotate/Replicons/EXAM.1216.00002.fna
delete mode 100644 Examples/1-res-Annotate/Replicons/GEN2.0219.00001.fna
delete mode 100644 Examples/1-res-Annotate/Replicons/GEN4.1111.00001.fna
delete mode 100644 Examples/1-res-Annotate/discarded-list_genomes.lst
delete mode 100644 Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log
delete mode 100644 Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log.details
delete mode 100644 Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log.err
delete mode 100644 Examples/1-res-Annotate/gff3/EXAM.0219.00001.gff
delete mode 100644 Examples/1-res-Annotate/gff3/EXAM.1216.00002.gff
delete mode 100644 Examples/1-res-Annotate/gff3/GEN2.0219.00001.gff
delete mode 100644 Examples/1-res-Annotate/gff3/GEN4.1111.00001.gff
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokka.log
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.err
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.faa
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.ffn
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fsa
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gbk
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gff
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.log
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.sqn
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tbl
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tsv
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.txt
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokka.log
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.err
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.faa
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.ffn
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fsa
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gbk
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gff
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.log
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.sqn
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tbl
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tsv
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.txt
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokka.log
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.err
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.faa
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.ffn
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fsa
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gbk
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gff
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.log
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.sqn
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tbl
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tsv
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.txt
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokka.log
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.err
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.faa
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.ffn
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fna
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fsa
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gbk
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gff
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.log
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.sqn
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tbl
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tsv
delete mode 100644 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.txt
diff --git a/Examples/1-res-Annotate/Genes/EXAM.0219.00001.gen b/Examples/1-res-Annotate/Genes/EXAM.0219.00001.gen
deleted file mode 100644
index b51d618b..00000000
--- a/Examples/1-res-Annotate/Genes/EXAM.0219.00001.gen
+++ /dev/null
@@ -1,169 +0,0 @@
->EXAM.0219.00001.b0001_00001 1668 glnS | Glutamine--tRNA ligase | 6.1.1.18 | similar to AA sequence:UniProtKB:P00962
-ATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTG
-GCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTG
-CATATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGC
-CAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTACGTTGAT
-TCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCC
-TCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTAATCAATAAAGGCCTGGCC
-TATGTTGATGAGCTGACGCCGGAGCAGATCCGTGAATACCGCGGTACGCTGACCGCGCCG
-GGTAAAAACAGCCCGTTCCGCGATCGCAGCGTCGAAGAGAACCTCGCGCTATTTGAAAAA
-ATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCG
-TCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCAT
-CAGACTGGCAACAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGAT
-GCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGATAACCGTCGTCTG
-TACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTCG
-CGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGAC
-AAACACGTCGAAGGTTGGGACGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGC
-GGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGAC
-AACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGAAAACGCG
-CCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAATTACCCGCAGGGT
-GAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAA
-GTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCAGATTTCCGCGAAGAAGCGAACAAA
-CAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGTCATTAAA
-GCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGAT
-GCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGG
-GTTAGCGCAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTG
-CCGAATCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATTAGTGATT
-AAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGAAAAGCTTTCCAGTTT
-GAACGTGAAGGCTACTTCTGCCTCGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTT
-AACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAGTAA
->EXAM.0219.00001.b0001_00002 831 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGTGGTTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGATATTATCGCGCGCTATAACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTAGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCACGCGAGCAGCAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->EXAM.0219.00001.b0002_00003 381 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG
-TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTT
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAG
->EXAM.0219.00001.i0002_00004 1410 NA | hypothetical protein | NA | NA
-ATGAGCATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTT
-GCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTC
-GATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGAC
-GGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACG
-ATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGG
-TTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTG
-ACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGC
-CCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATC
-GATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAA
-ATGGATGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAG
-TGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATT
-AATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTAT
-GACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGA
-TCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTC
-AAAGCCAAAAACATCACGCCCGGTTTCAGTAAAAATGCGGGTATTGATAACGCAACGATC
-GCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGG
-ATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAA
-TTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATT
-TCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACG
-CTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGCAATATCAACGTGATGCAAACT
-TCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTACGTGGTCAA
-TTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAAC
-GGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTG
-AATTTTTCGCTGCCGAAGCGGGGAGGGTAA
->EXAM.0219.00001.i0002_00005 774 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCC
-GGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGATGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTCAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCTCGCCATGTCTCTTCG
-CACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGTGATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
->EXAM.0219.00001.i0002_00006 735 trmD_1 | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-ATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTG
-AACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGAC
-CGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATT
-CACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGA
-CGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTG
-TGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGG
-TCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCC
-GTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTT
-GCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAA
-GTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAG
-TCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAA
-GAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACAT
-GATGGGATGGCATAG
->EXAM.0219.00001.i0002_00007 828 trmD_2 | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-ATGATGGGATGGCATAGCCGTCATATGGGCTCTCAGAGGAGACGCGCTAATGCGCAGTAC
-GTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGG
-GTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGAC
-TTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATG
-TTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAA
-GGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGC
-GAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAG
-CGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGT
-GGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTG
-GGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCAC
-TATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAAC
-CATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGA
-CCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTC
-AAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAG
->EXAM.0219.00001.i0002_00008 465 NA | hypothetical protein | NA | NA
-ATGAAGTTTGTTGCGCCCGAACAGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCG
-TTCTGGCCTGATGTGGACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTG
-ACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTG
-TACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCA
-GAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGG
-GCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAG
-CGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATC
-AGCCGGGTGCAGGATGTACCGCACTGTACGGTGGAGCTTATCTGA
->EXAM.0219.00001.i0002_00009 261 NA | hypothetical protein | NA | NA
-ATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCT
-GAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGAT
-CGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAA
-ATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCC
-GGTTATCGACTCGAAGGTTGA
->EXAM.0219.00001.i0002_00010 582 NA | hypothetical protein | NA | NA
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAGCTG
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGTATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
->EXAM.0219.00001.b0002_00011 1308 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTC
-TCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCC
-GCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTACGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGTATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATT
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCAATCATGGCTAAACTGGGCGTC
-GATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTG
-ATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/Genes/EXAM.1216.00002.gen b/Examples/1-res-Annotate/Genes/EXAM.1216.00002.gen
deleted file mode 100644
index be5612c5..00000000
--- a/Examples/1-res-Annotate/Genes/EXAM.1216.00002.gen
+++ /dev/null
@@ -1,158 +0,0 @@
->EXAM.1216.00002.b0001_00001 831 amiD_1 | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->EXAM.1216.00002.i0001_00002 831 amiD_2 | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->EXAM.1216.00002.i0001_00003 474 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-ATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAGG
-GCGCGGTATCGCGAGGACTCTCTCTTCGAGGACATGCCGCACTTTATTGCTGAATGTACT
-GAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTG
-GCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACC
-TGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGC
-GCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTCGGGCTGATTAAA
-GCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAG
-TTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAG
->EXAM.1216.00002.i0001_00004 225 pspB | Phage shock protein B | NA | similar to AA sequence:UniProtKB:P0AFM9
-ATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATT
-TGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAG
-CAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTG
-GAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAA
->EXAM.1216.00002.i0001_00005 1404 NA | hypothetical protein | NA | NA
-ATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTTGCTGTT
-CTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATT
-AAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAG
-ACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCG
-GCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATT
-TTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTG
-GATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGCCCCGTC
-GCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGAC
-ATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGAC
-GGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGTGGAAT
-GTCGCGATTCACGACCGCGATATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGT
-ACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAAC
-AGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGAT
-TGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCC
-AAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCAATT
-TATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTC
-ATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAAC
-GCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCC
-GGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAA
-CTGCATAATCAACCGCAGCACCTCTTCCTGCGTAATATCAACGTGATGCAAACTTCAGCG
-ATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATG
-GCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAG
-AGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTT
-TCGCTGCCGAAGCGGGGAGGGTAA
->EXAM.1216.00002.i0001_00006 774 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCC
-GGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGAC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCTCTCCGGTGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACT
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGTTCGCCATGTCTCTTCG
-CACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
->EXAM.1216.00002.i0001_00007 792 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-ATGCGCGCGATATATCGGCGATGCGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATG
-TTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAATGGCCTGCTGAAC
-ATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGCACCGTACCGTGGACGATCGT
-CCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCAC
-GCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGC
-AAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGT
-GGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCA
-ATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTC
-GCCCGGTTTATACCGGGAGTTCTGGGGCATGAAGCATCAGCAATCGAAGATTCGTTTGCT
-GATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTA
-CCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCG
-CTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAG
-CAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGAT
-GGGATGGCATAG
->EXAM.1216.00002.b0001_00008 288 NA | hypothetical protein | NA | NA
-ATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGC
-GCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACA
-CACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTG
-ACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCC
-GGGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA
->EXAM.1216.00002.b0002_00009 582 NA | hypothetical protein | NA | NA
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTA
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
->EXAM.1216.00002.b0002_00010 1308 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGGCTGATCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGTTCGCTC
-TCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCC
-GCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTAGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATCGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCAATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATC
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTGGGCGTC
-GATCCGGTGCATTTGGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTG
-ATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCATACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
->EXAM.1216.00002.b0003_00011 255 NA | hypothetical protein | NA | NA
-ATGATAATTAATGGGAAATTAATTAAAGCAAAAGACTTAGCTAAGGCTGCAGGTGTATCT
-CGTTCAACAGTGATTAAATATTACGGCATTAGCCGTGAGAATTACGAAAGGGTAGCAACT
-GAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATCAGGTTTAAAATGGAAAGAAGTTGCT
-GAAAAAATGAACACGACAAAATATAGCGCAATTGCATATTATAGACGATATTTAGCATTA
-GAGAAAAACAAATAA
->EXAM.1216.00002.b0003_00012 780 NA | Insertion sequence IS5376 putative ATP-binding protein | NA | similar to AA sequence:UniProtKB:Q45619
-ATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGCCGAACAGCTCCAGCTGGACAGT
-CTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGTGGATCAGGAATGGAGCTACATG
-GACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGCCCGGCATCAGCGTAAACAGGCG
-ATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGACGTTCGAGGAGTACGACTTCACC
-TTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCTGCGATCCCTGAGCTTCATAGAG
-CGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGTGGGAAAAACGCATCTGGCGATA
-GCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGTTCGCTTCACAACAGCAGCGGAC
-CTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCGTTACAAAACGACTCTCAATCGT
-GGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAATAGGTTATCTGCCGTTCAGTCAG
-GAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACGTTACGAGAAGAGCGCGATGATC
-CTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGACGTTCGCCGGTGATGCAGCGCTG
-ACATCGGCGATGCTGGACCGGATCTTACATCACTCACACGTCGTGCAAATAAAAGGGGAA
-AGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTATAGCTGAAGCTAATCCTGAGTAA
diff --git a/Examples/1-res-Annotate/Genes/GEN2.0219.00001.gen b/Examples/1-res-Annotate/Genes/GEN2.0219.00001.gen
deleted file mode 100644
index 63fed115..00000000
--- a/Examples/1-res-Annotate/Genes/GEN2.0219.00001.gen
+++ /dev/null
@@ -1,185 +0,0 @@
->GEN2.0219.00001.b0001_00001 774 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATTATCGGCTCGTCC
-GGTTCCGGTAAAAGCACTTTTTTGCGCTGCATTAACTTCCTCGAAAAATCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAACCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCG
-CACGTGATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCAATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
->GEN2.0219.00001.b0001_00002 1404 NA | hypothetical protein | NA | NA
-ATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTT
-CTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCCAGACCGTCGATATT
-AAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGGCAG
-ACTGTGGTCGTGCCGTCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCG
-GCGGGAAAAACGCTGCGGATACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATT
-TTGCTGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTG
-GATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTC
-GCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGAC
-ATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGAC
-GGCGCGCGGATTACGCATAGTCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAAT
-GTCGCGATTCATGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGT
-ACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCGCCTATGACAAT
-AGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGAT
-TGCCGACAACTGGTACACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCC
-AAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATT
-TATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTC
-ATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAAC
-GCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCC
-GGTAACGCCCCCTCATTTGTTGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAA
-CTGCATAATCAACCGCAGCACCTCTTTTTGCGTAATATCAACGTGATGCAAACTTCAGCG
-ATTGGCCCGGCGTTAAAAATGCATTTTGATTTGCGTAAAGATGTCCGTGGTCAATTTATG
-GCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAG
-AGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTT
-TCGCTGCCGAAGCGGGGAGGGTAA
->GEN2.0219.00001.b0002_00003 225 pspB | Phage shock protein B | NA | similar to AA sequence:UniProtKB:P0AFM9
-ATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATT
-TGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAG
-CAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTG
-GAAGATATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAA
->GEN2.0219.00001.i0002_00004 381 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG
-TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAG
->GEN2.0219.00001.i0002_00005 834 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-ATGATGAAAGCGCTACTGTGGCTGGTTGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGC
-GAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCG
-GCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCG
-CTGGCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCA
-TTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCTTGGCAT
-GCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAG
-CTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCC
-GCGCAAATTCAGGCATTGATCCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAA
-CCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCG
-CGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGT
-GTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTT
-GCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAG
-CGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGAT
-GCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->GEN2.0219.00001.b0002_00006 1668 glnS | Glutamine--tRNA ligase | 6.1.1.18 | similar to AA sequence:UniProtKB:P00962
-ATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTG
-GCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTG
-CACATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGC
-CAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTACGTTGAT
-TCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCC
-TCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTCATCAATAAAGGCCTGGCC
-TACGTTGATGAGCTGACGCCGGAGCAGATCCGCGAATACCGTGGTACGCTGACCGCGCCG
-GGTAAAAACAGCCCGTTCCGCGATCGCAGCGTGGAAGAAAACCTCGCGCTATTTGAAAAA
-ATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCG
-TCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCAT
-CAGACCGGCACGAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGAT
-GCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGACAACCGTCGTCTG
-TACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTCG
-CGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGAC
-AAACACGTCGAAGGTTGGGATGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGC
-GGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGAC
-AACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGAAAACGCG
-CCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAACTACCCGCAGGGC
-GAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAA
-GTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCGGATTTCCGCGAAGAAGCGAACAAA
-CAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGTCATTAAA
-GCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGAT
-GCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGG
-GTTAGCGTAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTG
-CCGAACCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATTAGTGATT
-AAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGGAAAGCTTTCCAGTTT
-GAACGTGAAGGTTACTTCTGCCTTGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTT
-AACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAATAA
->GEN2.0219.00001.b0003_00007 768 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-GTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGG
-GTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGAC
-TTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATG
-TTAATGATGGTGCAACCCTTGCGGGACGCCATTCATGCAGCAAAAGCCGCGGCAGGTGAA
-GGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGC
-GAGCTGGCCACGAATCAGAAACTCATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAG
-CGCGTAATTCAGGCCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGT
-GGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTG
-GGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCAC
-TATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAAC
-CATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCACTGGGCCGAACCTGGCTTAGAAGA
-CCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTC
-AAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAG
->GEN2.0219.00001.i0003_00008 261 NA | hypothetical protein | NA | NA
-ATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCT
-GAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGAT
-CGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAA
-ATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCT
-GGTTATCGACTCGAAGGTTGA
->GEN2.0219.00001.i0003_00009 582 NA | hypothetical protein | NA | NA
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTG
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTACTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGGGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
->GEN2.0219.00001.b0003_00010 369 NA | hypothetical protein | NA | NA
-ATGATGCGCACTGATGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTTGCGCTGTCGGCA
-ATTTCGGAGGTCAACGCAGAGCTGTATGAGTTTCGCAGACGCCAGCAGATGCTGGGGTAT
-GCCTCGCTGGCAGAAGTCCCGGCGGAACAACTGGACGGCAAAAGCGAGCGCATTCAGCAC
-TATTTCAACGCGGTTTACTGCTGGGCACGCGCCATGCTCAACGAACGTTACCAGGACTAT
-GACGCCACGGCATCCGGTGTGAAGCGGGGCGAAGAACTGGCAGAAGCCAGCGGTGATTTG
-TGGCGTGACGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCGCCGCACTGCACAGTGGAG
-CTTATCTGA
->GEN2.0219.00001.b0004_00011 1308 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGACTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTC
-TCTTACACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCC
-GCCTCAACCTCTATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGTTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATTGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATAGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATC
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATTATGACTAAACTGGGCGTC
-GATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATAGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGACGTT
-ATCAAACCGTTGATGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCACACTGTTTTTACCCCGTCTACTGGGCATCATGTAA
->GEN2.0219.00001.i0004_00012 465 NA | hypothetical protein | NA | NA
-ATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCG
-TTCTGGCCTGATGTGAACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTG
-ACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTG
-TACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCA
-GAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGG
-GCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAG
-CGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATC
-AGCCGGGTGCAGGATGCACCGCACTGTACGGTGGAGCTTATCTGA
->GEN2.0219.00001.b0004_00013 1014 xerC | Tyrosine recombinase XerC | NA | similar to AA sequence:UniProtKB:P39776
-ATGGAAACAAATATTACCTGGCAACAATTGATAGATGAATATTTCTTCGCAAAACCTCTG
-CGCTCAGCATCTGAATGGAGTTACACCAAAGTCTTCAAATCATTTGTACATTATATGGGG
-CCGTTAAGCTGCCCTAATGATGTGACATATCACAAAGTGCTTGCCTGGCGCCGTTTTCTT
-TTAAAAGAGAAAAAGCTGTCCGGACGTACCTGGAATAACAAGGTGGCGCATATGCGGGCC
-ATCTTTAACTACGGAATACAGCGAGGGTTACTGCACTATGACGAAAATCCGTTTAACAAT
-TCGGTAGTTAAACCGGACAAGAAGAGAAAGAAAACGCTCACTCAGGCACAGATTGAGTAT
-GCCTATCAGATCATGGAGCAGTATGAAAATCAGGAGAATACAGGGCTGGGACTGAAATAT
-TCCCGCTGCGCCTTATTTCCTGCATGGTTCTGGCTCACTGTCCTGGATACGCTCTATTAC
-ACAGGGATACGTCAGAACCAGTTATTACATATTCGGCTGAATGATGTTGATTTGAGAGAA
-GGGCAGATTCGGCTGATTACGGAGGGGTGTAAAAATCACAAAGAACACTATGTGCCGGTG
-ATCAGTTTTCTGCGTCCACGGCTGACCTGTTTAATGGAGAAAGCGCAGAGCGAAGGATTG
-AAAGGTAATGACCGCCTGTTCAATATTGCACTTTTTACCGGCAAAGATCCCGCCATTGGC
-GATGACATGGATTCTCCTCAGGTAAGAGCATTCTTCCGTCGTCTGTCCAAGGAGTGTCAG
-TTTGCGATCAGTCCTCATCGTTTCAGACACACGCTGGCCACGGAGATGATGAAAATGCCG
-GAACAGAATCTGCATATGGCGCAAAGTGTGCTGGGTCATTCAAACATGAAATCCACGCTG
-GAGTATGTGGAGAATGATATTGCAGTGATGGGGAGGGCTCTGGAAGCGCAGTTTATGCAG
-ATTAAGGCAGCACATGCCCGAAGCATTTACAGTGGGTTGACAAAGAATAGATAA
diff --git a/Examples/1-res-Annotate/Genes/GEN4.1111.00001.gen b/Examples/1-res-Annotate/Genes/GEN4.1111.00001.gen
deleted file mode 100644
index 91d8ef70..00000000
--- a/Examples/1-res-Annotate/Genes/GEN4.1111.00001.gen
+++ /dev/null
@@ -1,128 +0,0 @@
->GEN4.1111.00001.b0001_00001 831 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAGCAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->GEN4.1111.00001.i0001_00002 381 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTATGCG
-TTTGTGCATATGACGCTGAAAATCGGTACCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAG
->GEN4.1111.00001.i0001_00003 804 hpcG | 2-oxo-hept-4-ene-1,7-dioate hydratase | 4.2.1.163 | similar to AA sequence:UniProtKB:P42270
-ATGCTCGATAAACAGACCCATACCCTGATCGCCCAGCGACTTAATCAGGCTGAAAAACAG
-CGTGAACAAATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATGCCTAT
-GCCGTACAGCGTGAATGGGTCAATATCAAGATCGCCGAAGGGCGCACGCTCAAAGGCCAC
-AAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGGATTAC
-GGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGCGATATCCCCACCGACCGTTTT
-ATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCGGCCCT
-CACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGGAACTG
-ATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGTTCGAC
-ACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCAAACCA
-GACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCGAAGAA
-ACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGGCGAAC
-AAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCTCGTTC
-ACCCGCCCGGTGCCGGCGAGCAAGGGCGACACCTTCCATGTCGATTACGGCAACATGGGC
-GCGATCAGTTGCCGGTTTGTGTAA
->GEN4.1111.00001.i0001_00004 1404 NA | hypothetical protein | NA | NA
-ATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTT
-CTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATT
-AAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAG
-ACCGTGGTCTTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCG
-GCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATT
-TTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTG
-GATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTC
-GCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGAC
-ATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGAC
-GGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAAT
-GTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGT
-ACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAAC
-AGTTATCCTGAAGATCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGAT
-TGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCC
-AAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATT
-TATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCTGGGATGCTC
-ATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAAC
-GCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCC
-GGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAA
-CTGCATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCAAACTTCAGCG
-ATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATG
-GCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAG
-AGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTT
-TCGCTGCCGAAGCGGGGAGGGTAA
->GEN4.1111.00001.i0001_00005 774 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGTTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCC
-GGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCG
-CACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
->GEN4.1111.00001.i0001_00006 768 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-GTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGG
-GTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGAC
-TTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATG
-TTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAA
-GGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGC
-GAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAG
-CGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGT
-GGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTG
-GGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCAC
-TATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAAC
-CATGCCGAGATACGTCGCTGGCGCTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGA
-CCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTC
-AAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAG
->GEN4.1111.00001.i0001_00007 261 NA | hypothetical protein | NA | NA
-ATGGCTGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCT
-GAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGAT
-CGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAA
-ATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGTC
-GGTTATCGACTCGAAGGTTGA
->GEN4.1111.00001.i0001_00008 582 NA | hypothetical protein | NA | NA
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTCGAGATGATCGTCCCTCAACTA
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
->GEN4.1111.00001.b0001_00009 1083 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-ATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAA
-CTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCC
-GGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGC
-GAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATG
-TTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATT
-GCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTG
-GTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGC
-ATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATCGTC
-GGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTAT
-ACATTATTGTTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATT
-TTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCG
-ATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGT
-ATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGC
-GCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATG
-GCTAAACTGGGCGTCGATCCGGTGCATTTTGGCATTATCATGATCTATAACCTGGCGATT
-GGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTC
-AAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTG
-TTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATG
-TAA
diff --git a/Examples/1-res-Annotate/LSTINFO-list_genomes.lst b/Examples/1-res-Annotate/LSTINFO-list_genomes.lst
deleted file mode 100644
index 7c51ff2c..00000000
--- a/Examples/1-res-Annotate/LSTINFO-list_genomes.lst
+++ /dev/null
@@ -1,5 +0,0 @@
-gembase_name orig_name gsize nb_conts L90
-EXAM.0219.00001 genome1.fst 9808 2 2
-EXAM.1216.00002 genome3-chromo.fst-all.fna 8817 3 3
-GEN2.0219.00001 genome2.fst 10711 4 4
-GEN4.1111.00001 genome4.fst 7134 1 1
diff --git a/Examples/1-res-Annotate/LSTINFO/EXAM.0219.00001.lst b/Examples/1-res-Annotate/LSTINFO/EXAM.0219.00001.lst
deleted file mode 100644
index 2311964a..00000000
--- a/Examples/1-res-Annotate/LSTINFO/EXAM.0219.00001.lst
+++ /dev/null
@@ -1,11 +0,0 @@
-213 1880 D CDS EXAM.0219.00001.b0001_00001 glnS | Glutamine--tRNA ligase | 6.1.1.18 | similar to AA sequence:UniProtKB:P00962
-1916 2746 D CDS EXAM.0219.00001.b0001_00002 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-16 396 D CDS EXAM.0219.00001.b0002_00003 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-428 1837 D CDS EXAM.0219.00001.i0002_00004 NA | hypothetical protein | NA | NA
-1869 2642 D CDS EXAM.0219.00001.i0002_00005 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-2709 3443 D CDS EXAM.0219.00001.i0002_00006 trmD_1 | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-3427 4254 D CDS EXAM.0219.00001.i0002_00007 trmD_2 | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-4299 4763 D CDS EXAM.0219.00001.i0002_00008 NA | hypothetical protein | NA | NA
-4818 5078 D CDS EXAM.0219.00001.i0002_00009 NA | hypothetical protein | NA | NA
-5117 5698 D CDS EXAM.0219.00001.i0002_00010 NA | hypothetical protein | NA | NA
-5717 7024 D CDS EXAM.0219.00001.b0002_00011 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
diff --git a/Examples/1-res-Annotate/LSTINFO/EXAM.1216.00002.lst b/Examples/1-res-Annotate/LSTINFO/EXAM.1216.00002.lst
deleted file mode 100644
index 8bf48ea4..00000000
--- a/Examples/1-res-Annotate/LSTINFO/EXAM.1216.00002.lst
+++ /dev/null
@@ -1,12 +0,0 @@
-1 831 D CDS EXAM.1216.00002.b0001_00001 amiD_1 | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-880 1710 D CDS EXAM.1216.00002.i0001_00002 amiD_2 | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-1655 2128 D CDS EXAM.1216.00002.i0001_00003 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-2172 2396 D CDS EXAM.1216.00002.i0001_00004 pspB | Phage shock protein B | NA | similar to AA sequence:UniProtKB:P0AFM9
-2425 3828 D CDS EXAM.1216.00002.i0001_00005 NA | hypothetical protein | NA | NA
-3863 4636 D CDS EXAM.1216.00002.i0001_00006 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-4641 5432 D CDS EXAM.1216.00002.i0001_00007 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-5460 5747 D CDS EXAM.1216.00002.b0001_00008 NA | hypothetical protein | NA | NA
-1 582 D CDS EXAM.1216.00002.b0002_00009 NA | hypothetical protein | NA | NA
-629 1936 D CDS EXAM.1216.00002.b0002_00010 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-26 280 D CDS EXAM.1216.00002.b0003_00011 NA | hypothetical protein | NA | NA
-323 1102 D CDS EXAM.1216.00002.b0003_00012 NA | Insertion sequence IS5376 putative ATP-binding protein | NA | similar to AA sequence:UniProtKB:Q45619
diff --git a/Examples/1-res-Annotate/LSTINFO/GEN2.0219.00001.lst b/Examples/1-res-Annotate/LSTINFO/GEN2.0219.00001.lst
deleted file mode 100644
index 5c3a772d..00000000
--- a/Examples/1-res-Annotate/LSTINFO/GEN2.0219.00001.lst
+++ /dev/null
@@ -1,13 +0,0 @@
-1 774 D CDS GEN2.0219.00001.b0001_00001 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-857 2260 D CDS GEN2.0219.00001.b0001_00002 NA | hypothetical protein | NA | NA
-28 252 D CDS GEN2.0219.00001.b0002_00003 pspB | Phage shock protein B | NA | similar to AA sequence:UniProtKB:P0AFM9
-301 681 D CDS GEN2.0219.00001.i0002_00004 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-764 1597 D CDS GEN2.0219.00001.i0002_00005 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-1628 3295 D CDS GEN2.0219.00001.b0002_00006 glnS | Glutamine--tRNA ligase | 6.1.1.18 | similar to AA sequence:UniProtKB:P00962
-30 797 D CDS GEN2.0219.00001.b0003_00007 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-862 1122 D CDS GEN2.0219.00001.i0003_00008 NA | hypothetical protein | NA | NA
-1170 1751 D CDS GEN2.0219.00001.i0003_00009 NA | hypothetical protein | NA | NA
-1895 2263 D CDS GEN2.0219.00001.b0003_00010 NA | hypothetical protein | NA | NA
-1 1308 D CDS GEN2.0219.00001.b0004_00011 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-1340 1804 D CDS GEN2.0219.00001.i0004_00012 NA | hypothetical protein | NA | NA
-1832 2845 D CDS GEN2.0219.00001.b0004_00013 xerC | Tyrosine recombinase XerC | NA | similar to AA sequence:UniProtKB:P39776
diff --git a/Examples/1-res-Annotate/LSTINFO/GEN4.1111.00001.lst b/Examples/1-res-Annotate/LSTINFO/GEN4.1111.00001.lst
deleted file mode 100644
index 7a86a11f..00000000
--- a/Examples/1-res-Annotate/LSTINFO/GEN4.1111.00001.lst
+++ /dev/null
@@ -1,9 +0,0 @@
-1 831 D CDS GEN4.1111.00001.b0001_00001 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-861 1241 D CDS GEN4.1111.00001.i0001_00002 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-1271 2074 D CDS GEN4.1111.00001.i0001_00003 hpcG | 2-oxo-hept-4-ene-1,7-dioate hydratase | 4.2.1.163 | similar to AA sequence:UniProtKB:P42270
-2111 3514 D CDS GEN4.1111.00001.i0001_00004 NA | hypothetical protein | NA | NA
-3535 4308 D CDS GEN4.1111.00001.i0001_00005 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-4327 5094 D CDS GEN4.1111.00001.i0001_00006 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-5138 5398 D CDS GEN4.1111.00001.i0001_00007 NA | hypothetical protein | NA | NA
-5413 5994 D CDS GEN4.1111.00001.i0001_00008 NA | hypothetical protein | NA | NA
-6052 7134 D CDS GEN4.1111.00001.b0001_00009 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
diff --git a/Examples/1-res-Annotate/Proteins/EXAM.0219.00001.prt b/Examples/1-res-Annotate/Proteins/EXAM.0219.00001.prt
deleted file mode 100644
index e07e3d35..00000000
--- a/Examples/1-res-Annotate/Proteins/EXAM.0219.00001.prt
+++ /dev/null
@@ -1,69 +0,0 @@
->EXAM.0219.00001.b0001_00001 1668 glnS | Glutamine--tRNA ligase | 6.1.1.18 | similar to AA sequence:UniProtKB:P00962
-MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQG
-QCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSDYFDQLHAYAVELINKGLA
-YVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMA
-SPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRL
-YDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR
-GYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQG
-ESEMVTMPNHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLVMGKEVRLRNAYVIK
-AERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPIEIRLYDRLFSV
-PNPGAAEDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADKLVF
-NRTVGLRDTWAKAGE
->EXAM.0219.00001.b0001_00002 831 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSL
-ATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIEL
-ENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYNIKPQNVVAHADIAPQRKDDPGPR
-FPWRELAAQGISAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQR
-VIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->EXAM.0219.00001.b0002_00003 381 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADGKHDYA
-FVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNN
-VHALFK
->EXAM.0219.00001.i0002_00004 1410 NA | hypothetical protein | NA | NA
-MSMPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQAFAD
-GQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNV
-TLDVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQ
-MDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERINCTNGKINWGIGIGLAGSTY
-DNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPGFSKNAGIDNATI
-AIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQI
-SSGNTPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQ
-FMARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
->EXAM.0219.00001.i0002_00005 774 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG
-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV
-LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT
-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF
-GNPQSPRLQQFLKGSLK
->EXAM.0219.00001.i0002_00006 735 trmD_1 | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-MFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGMLMMVQPLRDAI
-HAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDERVIQTEIDEEW
-SIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGME
-VPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKH
-DGMA
->EXAM.0219.00001.i0002_00007 828 trmD_2 | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-MMGWHSRHMGSQRRRANAQYVFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRD
-FAHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVS
-ELATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVL
-GHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRR
-PELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA
->EXAM.0219.00001.i0002_00008 465 NA | hypothetical protein | NA | NA
-MKFVAPEQAPEQAEVIKNTPFWPDVDLSEFRSVMRTDGTVTQPRLKQVVLTAISEVNAEL
-YDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWARAVLNERYQDYDATASGVK
-RGEELAEASGDLWRDARWAISRVQDVPHCTVELI
->EXAM.0219.00001.i0002_00009 261 NA | hypothetical protein | NA | NA
-MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRYGLDKE
-MVMDFFKENHSGMAVRFFMAGYRLEG
->EXAM.0219.00001.i0002_00010 582 NA | hypothetical protein | NA | NA
-MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLVLEHGG
-APLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
-HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLYYRQAVAYYASCRQTVTEGGNHAFTGFEDY
-FNQIVDFLGLHSC
->EXAM.0219.00001.b0002_00011 1308 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS
-FALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIA
-ASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFA
-GGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
-GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSM
-SITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGV
-DPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITY
-IPEITLFLPRLLGIM
diff --git a/Examples/1-res-Annotate/Proteins/EXAM.1216.00002.prt b/Examples/1-res-Annotate/Proteins/EXAM.1216.00002.prt
deleted file mode 100644
index 82124bdf..00000000
--- a/Examples/1-res-Annotate/Proteins/EXAM.1216.00002.prt
+++ /dev/null
@@ -1,66 +0,0 @@
->EXAM.1216.00002.b0001_00001 831 amiD_1 | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-MRALLWLVGLALLLTGCASEKGIIDEEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSL
-ATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIEL
-ENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPR
-FPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQR
-VIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->EXAM.1216.00002.i0001_00002 831 amiD_2 | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-MRALLWLVGLALLLTGCASEKGIIDEEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSL
-ATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIEL
-ENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPR
-FPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQR
-VIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->EXAM.1216.00002.i0001_00003 474 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-MPKRRRLPKHYWRSTARINRARYREDSLFEDMPHFIAECTENIREQADLPGLFSKVNEAL
-AASGIFPIGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIK
-AHFADLMENRYLALSFEIAELHPTLNYKQNNVHALFK
->EXAM.1216.00002.i0001_00004 225 pspB | Phage shock protein B | NA | similar to AA sequence:UniProtKB:P0AFM9
-MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLLQLTDDAQRMRERIQAL
-EDILDAEHPNWRER
->EXAM.1216.00002.i0001_00005 1404 NA | hypothetical protein | NA | NA
-MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQAFADGQ
-TVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTL
-DVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMD
-GARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERIDCTNGKINWGIGIGLAGSTYDN
-SYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSKNAGIDNATIAI
-YGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISS
-GNTPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFM
-ARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
->EXAM.1216.00002.i0001_00006 774 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSED
-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV
-LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT
-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFVRHVSSHVIFLHQGKIEEEGDPEQVF
-GNPQSPRLQQFLKGSLK
->EXAM.1216.00002.i0001_00007 792 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-MRAIYRRCVFIGIVSLFPEMFRAITDYGVTGRAVKNGLLNIQSWSPRDFTHDRHRTVDDR
-PYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVC
-GRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFA
-DGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEE
-QARLLAEFKTEHAQQQHKHDGMA
->EXAM.1216.00002.b0001_00008 288 NA | hypothetical protein | NA | NA
-MNNHFGKGLMAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGIL
-TRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG
->EXAM.1216.00002.b0002_00009 582 NA | hypothetical protein | NA | NA
-MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLVLEHGG
-APLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
-HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDY
-FNQIVDFLGLHSC
->EXAM.1216.00002.b0002_00010 1308 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS
-FALLAVPFFVLSGVIMNSGGIAARLINFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIA
-ASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFA
-GGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
-GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSM
-SITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGV
-DPVHLGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITY
-IPEIILFLPRLLGIM
->EXAM.1216.00002.b0003_00011 255 NA | hypothetical protein | NA | NA
-MIINGKLIKAKDLAKAAGVSRSTVIKYYGISRENYERVATERRKLAFELRASGLKWKEVA
-EKMNTTKYSAIAYYRRYLALEKNK
->EXAM.1216.00002.b0003_00012 780 NA | Insertion sequence IS5376 putative ATP-binding protein | NA | similar to AA sequence:UniProtKB:Q45619
-MVELQHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQA
-MYTRMAAFPAVKTFEEYDFTFATGAPQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAI
-AMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRGVMAPKLLIIDEIGYLPFSQ
-EEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGE
-SYRLKQKRKAGVIAEANPE
diff --git a/Examples/1-res-Annotate/Proteins/GEN2.0219.00001.prt b/Examples/1-res-Annotate/Proteins/GEN2.0219.00001.prt
deleted file mode 100644
index dd6ca8c2..00000000
--- a/Examples/1-res-Annotate/Proteins/GEN2.0219.00001.prt
+++ /dev/null
@@ -1,77 +0,0 @@
->GEN2.0219.00001.b0001_00001 774 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKSSEG
-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWNHMTVLENVMEAPIQV
-LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT
-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGNPEQVF
-GNPQSPRLQQFLKGSLK
->GEN2.0219.00001.b0001_00002 1404 NA | hypothetical protein | NA | NA
-MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRQTVDIKDYPADDGIASFKQAFADGQ
-TVVVPSGWVCENINAAITIPAGKTLRIQGAVRGNGRGRFILLDGCQVVGEQGGSLHNVTL
-DVRGSDCVIKGVTMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMD
-GARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERIDCTNGKINWGIGIGLAGSAYDN
-SYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSKNAGIDNATIAI
-YGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISS
-GNAPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFM
-ARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
->GEN2.0219.00001.b0002_00003 225 pspB | Phage shock protein B | NA | similar to AA sequence:UniProtKB:P0AFM9
-MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLLQLTDDAQRMRERIQAL
-EDILDAEHPNWRER
->GEN2.0219.00001.i0002_00004 381 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-MPHFIAECTENIREQADLPSLFSKVNEALAATGIFPIGGIRSRAHWLDTWQMADGKHDYA
-FVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNN
-VHALFK
->GEN2.0219.00001.i0002_00005 834 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-MMKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVS
-LATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIE
-LENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGP
-RFPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQ
-RVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->GEN2.0219.00001.b0002_00006 1668 glnS | Glutamine--tRNA ligase | 6.1.1.18 | similar to AA sequence:UniProtKB:P00962
-MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQG
-QCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSDYFDQLHAYAVELINKGLA
-YVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMA
-SPFIVMRDPVLYRIKFAEHHQTGTKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRL
-YDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR
-GYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQG
-ESEMVTMPNHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLVMGKEVRLRNAYVIK
-AERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSVAHALPIEIRLYDRLFSV
-PNPGAAEDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADKLVF
-NRTVGLRDTWAKAGE
->GEN2.0219.00001.b0003_00007 768 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGM
-LMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDE
-RVIQAEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPH
-YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF
-KTEHAQQQHKHDGMA
->GEN2.0219.00001.i0003_00008 261 NA | hypothetical protein | NA | NA
-MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRYGLDKE
-MVMDFFKENHSGMAVRFFMAGYRLEG
->GEN2.0219.00001.i0003_00009 582 NA | hypothetical protein | NA | NA
-MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLVLEHGG
-APLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
-HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDY
-FNQIVDFLGLHSC
->GEN2.0219.00001.b0003_00010 369 NA | hypothetical protein | NA | NA
-MMRTDGTVTQPRLKQVALSAISEVNAELYEFRRRQQMLGYASLAEVPAEQLDGKSERIQH
-YFNAVYCWARAMLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCTVE
-LI
->GEN2.0219.00001.b0004_00011 1308 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS
-FALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIA
-ASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFA
-GGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
-GIFTAIEASAIAVVYTLLLTIVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSM
-SITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMTKLGV
-DPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEDVIKPLMPFYGAIIGVLLLITY
-IPEITLFLPRLLGIM
->GEN2.0219.00001.i0004_00012 465 NA | hypothetical protein | NA | NA
-MKFVAPEQAPEQAEVIKNTPFWPDVNLSEFRSVMRTDGTVTQPRLKQVVLTAISEVNAEL
-YDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWARAVLNERYQDYDATASGVK
-RGEELAEASGDLWRDARWAISRVQDAPHCTVELI
->GEN2.0219.00001.b0004_00013 1014 xerC | Tyrosine recombinase XerC | NA | similar to AA sequence:UniProtKB:P39776
-METNITWQQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTYHKVLAWRRFL
-LKEKKLSGRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSVVKPDKKRKKTLTQAQIEY
-AYQIMEQYENQENTGLGLKYSRCALFPAWFWLTVLDTLYYTGIRQNQLLHIRLNDVDLRE
-GQIRLITEGCKNHKEHYVPVISFLRPRLTCLMEKAQSEGLKGNDRLFNIALFTGKDPAIG
-DDMDSPQVRAFFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQSVLGHSNMKSTL
-EYVENDIAVMGRALEAQFMQIKAAHARSIYSGLTKNR
diff --git a/Examples/1-res-Annotate/Proteins/GEN4.1111.00001.prt b/Examples/1-res-Annotate/Proteins/GEN4.1111.00001.prt
deleted file mode 100644
index dccb76f5..00000000
--- a/Examples/1-res-Annotate/Proteins/GEN4.1111.00001.prt
+++ /dev/null
@@ -1,52 +0,0 @@
->GEN4.1111.00001.b0001_00001 831 amiD | N-acetylmuramoyl-L-alanine amidase AmiD | 3.5.1.28 | similar to AA sequence:UniProtKB:P75820
-MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSL
-ATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIEL
-ENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPR
-FPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQR
-VIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->GEN4.1111.00001.i0001_00002 381 hpcD | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | 5.3.3.10 | similar to AA sequence:UniProtKB:Q05354
-MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADGKHDYA
-FVHMTLKIGTGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNN
-VHALFK
->GEN4.1111.00001.i0001_00003 804 hpcG | 2-oxo-hept-4-ene-1,7-dioate hydratase | 4.2.1.163 | similar to AA sequence:UniProtKB:P42270
-MLDKQTHTLIAQRLNQAEKQREQIRAVSLDYPNITIEDAYAVQREWVNIKIAEGRTLKGH
-KIGLTSKAMQASSQISEPDYGALLDDMFFHDGGDIPTDRFIVPRIEVELAFVLAKPLRGP
-HCTLFDVYNATDYVIPALELIDARSHNIDPETQRPRKVFDTISDNAANAGVILGGRPIKP
-DELDLRWISALLYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSF
-TRPVPASKGDTFHVDYGNMGAISCRFV
->GEN4.1111.00001.i0001_00004 1404 NA | hypothetical protein | NA | NA
-MPVNKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQAFADGQ
-TVVLPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTL
-DVRGSDCVIKGVTMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMD
-GARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERIDCTNGKINWGIGIGLAGSTYDN
-SYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSKNAGIDNATIAI
-YGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISS
-GNIPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFM
-ARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
->GEN4.1111.00001.i0001_00005 774 hisP | Histidine transport ATP-binding protein HisP | NA | similar to AA sequence:UniProtKB:P02915
-MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG
-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV
-LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT
-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF
-GNPQSPRLQQFLKGSLK
->GEN4.1111.00001.i0001_00006 768 trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | similar to AA sequence:UniProtKB:P0A873
-MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGM
-LMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDE
-RVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPH
-YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF
-KTEHAQQQHKHDGMA
->GEN4.1111.00001.i0001_00007 261 NA | hypothetical protein | NA | NA
-MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRYGLDKE
-MVMDFFKENHSGMAVRFFMVGYRLEG
->GEN4.1111.00001.i0001_00008 582 NA | hypothetical protein | NA | NA
-MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLVLEHGG
-APLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
-HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDY
-FNQIVDFLGLHSC
->GEN4.1111.00001.b0001_00009 1083 dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | NA | similar to AA sequence:UniProtKB:O07838
-MNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMSAR
-EGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFAGGLVAGVLWGVGCML
-VTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVY
-TLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILG
-ISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVHFGIIMIYNLAI
-GTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM
diff --git a/Examples/1-res-Annotate/QC_L90-list_genomes.png b/Examples/1-res-Annotate/QC_L90-list_genomes.png
deleted file mode 100644
index e501adc9b9429b8ce0ac215a40d81c39a5620bef..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001
literal 15571
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diff --git a/Examples/1-res-Annotate/Replicons/EXAM.0219.00001.fna b/Examples/1-res-Annotate/Replicons/EXAM.0219.00001.fna
deleted file mode 100644
index 3ee2afdd..00000000
--- a/Examples/1-res-Annotate/Replicons/EXAM.0219.00001.fna
+++ /dev/null
@@ -1,4 +0,0 @@
->EXAM.0219.00001.0001
-ATGTGTAAAAGCCGGAGGGGTTATCTTTTCCCGGCTTTTTATTATCAATTACTCATTAACTCCTGTTCCGTTCTTTTGCGTTTAATCACCGGAATATCTCCGGTATTGTTCAGCGCCCCGGAAATGTTTTTAACCACTGTTCTGCACTCCGTTTATTAAACGCGCTCAGCGCGCGCTCATATATCGCGCGCGCGCGCGCGCATATATATATAATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCATATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTACGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCCTCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTAATCAATAAAGGCCTGGCCTATGTTGATGAGCTGACGCCGGAGCAGATCCGTGAATACCGCGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTCGAAGAGAACCTCGCGCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCGTCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACTGGCAACAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGATAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTCGCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACACGTCGAAGGTTGGGACGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGAAAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAATTACCCGCAGGGTGAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCAGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGATGCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGCAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAATCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGAAAAGCTTTCCAGTTTGAACGTGAAGGCTACTTCTGCCTCGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAGTAACGCGCATAGGCGGCCTTCAAGGAGGCGCTAGGCGAATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGTGGTTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGATATTATCGCGCGCTATAACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTAGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCACGCGAGCAGCAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATAGGCGCGCGAGATTACGCGCGCAGTATCGCGC
->EXAM.0219.00001.0002
-CGCGCATAGCGCGCAATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTTGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGATATGAGGCGCGGCGCTATAAGGCGCTCATGAGCATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGATGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTAATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGGTTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGCAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTACGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGAATTCCGCGGCATATAGCGGCGCGATAGCATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGATGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTCAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGTGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACGCTCAGAGGCGCGCGCGCGCTATATACGCGCAGTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCCGTCATATGGGCTCTCAGAGGAGACGCGCTAATGCGCAGTACGTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGCATACGCGCGCGATATATATTCGCGCAGAGGCGCGCATAGCGATGAAGTTTGTTGCGCCCGAACAGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCGTTCTGGCCTGATGTGGACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGTACCGCACTGTACGGTGGAGCTTATCTGAACGGCTAGCGCGTAGCGGCAGTCTCGGATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGACGATCGCGCGCAGGAGGAGAGCTCTCTTCTTCTAGAGCATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAGCTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGTATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACGGCTATGCGCGCGCTCGATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTACGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGTATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATTGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCAATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/Replicons/EXAM.1216.00002.fna b/Examples/1-res-Annotate/Replicons/EXAM.1216.00002.fna
deleted file mode 100644
index a6c8c7d6..00000000
--- a/Examples/1-res-Annotate/Replicons/EXAM.1216.00002.fna
+++ /dev/null
@@ -1,6 +0,0 @@
->EXAM.1216.00002.0001
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGAGTCCGGGAGCGGCGAGATTCCGGGCAGAGGAGGCGGCTATAGCGGATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAGGGCGCGGTATCGCGAGGACTCTCTCTTCGAGGACATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTCGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCCGAGTATTAGCGCGCGGCGGCGCTATAGGCGCGCTATAGGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTGGAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAACGAGAGTCTCGGAGGAGCGGCGCTCTGGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGACGGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGATATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTCCTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGCGTCTGCGCGCGCGGAGAGAGGCTCTCAGGACATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGACGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCTCTCCGGTGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACTTCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGTTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACCGGATGCGCGCGATATATCGGCGATGCGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAATGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGCACCGTACCGTGGACGATCGTCCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGAGTTCTGGGGCATGAAGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCCGGCTCTGCGAGAGAGGAGCGCTCGCATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA
->EXAM.1216.00002.0002
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACGCGTAGCGGCCGGAATCTTCTCGGAGAGGCGCTTCTCTCTCGGAGATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGATCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGTTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTAGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCAATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTGGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCATACTGTTCTTACCCCGTCTACTGGGCATCATGTAAACCCGATGGCGCGCAGAGGCGCGAGTTCTGGA
->EXAM.1216.00002.0003
-CACAGGGCTTAGAGGCGCTATGGCAATGATAATTAATGGGAAATTAATTAAAGCAAAAGACTTAGCTAAGGCTGCAGGTGTATCTCGTTCAACAGTGATTAAATATTACGGCATTAGCCGTGAGAATTACGAAAGGGTAGCAACTGAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATCAGGTTTAAAATGGAAAGAAGTTGCTGAAAAAATGAACACGACAAAATATAGCGCAATTGCATATTATAGACGATATTTAGCATTAGAGAAAAACAAATAACAGGCGCTAAGGCGGCGATCCTAGCGCGCGATCGCGCATGCGATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGCCGAACAGCTCCAGCTGGACAGTCTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGTGGATCAGGAATGGAGCTACATGGACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGCCCGGCATCAGCGTAAACAGGCGATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGACGTTCGAGGAGTACGACTTCACCTTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCTGCGATCCCTGAGCTTCATAGAGCGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGTGGGAAAAACGCATCTGGCGATAGCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGTTCGCTTCACAACAGCAGCGGACCTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCGTTACAAAACGACTCTCAATCGTGGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAATAGGTTATCTGCCGTTCAGTCAGGAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACGTTACGAGAAGAGCGCGATGATCCTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGACGTTCGCCGGTGATGCAGCGCTGACATCGGCGATGCTGGACCGGATCTTACATCACTCACACGTCGTGCAAATAAAAGGGGAAAGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTATAGCTGAAGCTAATCCTGAGTAA
diff --git a/Examples/1-res-Annotate/Replicons/GEN2.0219.00001.fna b/Examples/1-res-Annotate/Replicons/GEN2.0219.00001.fna
deleted file mode 100644
index df3fc3c1..00000000
--- a/Examples/1-res-Annotate/Replicons/GEN2.0219.00001.fna
+++ /dev/null
@@ -1,8 +0,0 @@
->GEN2.0219.00001.0001
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATTATCGGCTCGTCCGGTTCCGGTAAAAGCACTTTTTTGCGCTGCATTAACTTCCTCGAAAAATCGAGCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAACCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCGCACGTGATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCAATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAAACGCTAGAGGACGCGCCTCTCAGAGAGCGCGCTCTCTCAGAGAGGCGCGCGCCTCTTTCGCAGAGACCNNCGCTCATGAGCGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCCAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGGCAGACTGTGGTCGTGCCGTCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGATACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCTGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGACGGCGCGCGGATTACGCATAGTCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAATGTCGCGATTCATGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCGCCTATGACAATAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAACTGGTACACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGTAACGCCCCCTCATTTGTTGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTTTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTTGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACACTCGCGCATAGAGAGCTCTCAGAGGAGCGCGCGCGCTATAGCGCGC
->GEN2.0219.00001.0002
-CGCGATAATATAGCGCGCGCTCATAGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTGGAAGATATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAACGCCATATTATAGCGCGCCTCATAAGAGCGGCCTATAGCGCGCTANNNATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCAGAGATTCGCGCGTTCAGAGAGGAGCTCTCTCATAGACGCGCGCATATGCGCTCTAGAGAGGCGCGCCTAATGGCGCGCTATGATGAAAGCGCTACTGTGGCTGGTTGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCTTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATCCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAAAGCGCTCTCAGAGAGAGCGCTCTGCAGATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCACATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTACGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCCTCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTCATCAATAAAGGCCTGGCCTACGTTGATGAGCTGACGCCGGAGCAGATCCGCGAATACCGTGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTGGAAGAAAACCTCGCGCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCGTCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACCGGCACGAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGACAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTCGCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACACGTCGAAGGTTGGGATGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGAAAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAACTACCCGCAGGGCGAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCGGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGATGCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGTAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAACCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGGAAAGCTTTCCAGTTTGAACGTGAAGGTTACTTCTGCCTTGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAATAA
->GEN2.0219.00001.0003
-ACGCGCTATAGGGCTCTCAGAGAGTCTCAGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCATGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAACTCATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGGCCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCACTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGAGATCGCGCATAGCGCGCGGCGAGATCCGCGAGACATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCTGGTTATCGACTCGAAGGTTGAACGCCTCTAGAGCGCTAGAGGCGCGCGCGATATACGCGGCGCGAGACATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTACTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGGGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACCGGATATACGCGCGCGCGCTATATAGCGCGCGCGGCGATATAGCGCATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAAATCATCAGAAATACGCCGTTCTGGCCTGATGTGGACCTGTCGGAGTTTCGCAGCATGATGCGCACTGATGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTTGCGCTGTCGGCAATTTCGGAGGTCAACGCAGAGCTGTATGAGTTTCGCAGACGCCAGCAGATGCTGGGGTATGCCTCGCTGGCAGAAGTCCCGGCGGAACAACTGGACGGCAAAAGCGAGCGCATTCAGCACTATTTCAACGCGGTTTACTGCTGGGCACGCGCCATGCTCAACGAACGTTACCAGGACTATGACGCCACGGCATCCGGTGTGAAGCGGGGCGAAGAACTGGCAGAAGCCAGCGGTGATTTGTGGCGTGACGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCGCCGCACTGCACAGTGGAGCTTATCTGA
->GEN2.0219.00001.0004
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGACTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTACACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCCGCCTCAACCTCTATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGTTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATTGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATAGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATTATGACTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATAGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGACGTTATCAAACCGTTGATGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTTTTTACCCCGTCTACTGGGCATCATGTAAACGCTCATAGGCGGCGCGCGCGCTCTCAGGAATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCGTTCTGGCCTGATGTGAACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCACCGCACTGTACGGTGGAGCTTATCTGACGCTCATAGGCGCGCGCTCATAGCGCGATGGAAACAAATATTACCTGGCAACAATTGATAGATGAATATTTCTTCGCAAAACCTCTGCGCTCAGCATCTGAATGGAGTTACACCAAAGTCTTCAAATCATTTGTACATTATATGGGGCCGTTAAGCTGCCCTAATGATGTGACATATCACAAAGTGCTTGCCTGGCGCCGTTTTCTTTTAAAAGAGAAAAAGCTGTCCGGACGTACCTGGAATAACAAGGTGGCGCATATGCGGGCCATCTTTAACTACGGAATACAGCGAGGGTTACTGCACTATGACGAAAATCCGTTTAACAATTCGGTAGTTAAACCGGACAAGAAGAGAAAGAAAACGCTCACTCAGGCACAGATTGAGTATGCCTATCAGATCATGGAGCAGTATGAAAATCAGGAGAATACAGGGCTGGGACTGAAATATTCCCGCTGCGCCTTATTTCCTGCATGGTTCTGGCTCACTGTCCTGGATACGCTCTATTACACAGGGATACGTCAGAACCAGTTATTACATATTCGGCTGAATGATGTTGATTTGAGAGAAGGGCAGATTCGGCTGATTACGGAGGGGTGTAAAAATCACAAAGAACACTATGTGCCGGTGATCAGTTTTCTGCGTCCACGGCTGACCTGTTTAATGGAGAAAGCGCAGAGCGAAGGATTGAAAGGTAATGACCGCCTGTTCAATATTGCACTTTTTACCGGCAAAGATCCCGCCATTGGCGATGACATGGATTCTCCTCAGGTAAGAGCATTCTTCCGTCGTCTGTCCAAGGAGTGTCAGTTTGCGATCAGTCCTCATCGTTTCAGACACACGCTGGCCACGGAGATGATGAAAATGCCGGAACAGAATCTGCATATGGCGCAAAGTGTGCTGGGTCATTCAAACATGAAATCCACGCTGGAGTATGTGGAGAATGATATTGCAGTGATGGGGAGGGCTCTGGAAGCGCAGTTTATGCAGATTAAGGCAGCACATGCCCGAAGCATTTACAGTGGGTTGACAAAGAATAGATAA
diff --git a/Examples/1-res-Annotate/Replicons/GEN4.1111.00001.fna b/Examples/1-res-Annotate/Replicons/GEN4.1111.00001.fna
deleted file mode 100644
index 821ceba7..00000000
--- a/Examples/1-res-Annotate/Replicons/GEN4.1111.00001.fna
+++ /dev/null
@@ -1,2 +0,0 @@
->GEN4.1111.00001.0001
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAGCAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATCGCGCGCATATCGCGCGCGATAGATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTATGCGTTTGTGCATATGACGCTGAAAATCGGTACCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGCATATGCGGCGCTCAGGAGCGCTAGCATGCTCGATAAACAGACCCATACCCTGATCGCCCAGCGACTTAATCAGGCTGAAAAACAGCGTGAACAAATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATCGCCGAAGGGCGCACGCTCAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGCGATATCCCCACCGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCTCGTTCACCCGCCCGGTGCCGGCGAGCAAGGGCGACACCTTCCATGTCGATTACGGCAACATGGGCGCGATCAGTTGCCGGTTTGTGTAACCAGATCCGCGCGCGCATATATATCGCGCGCATACGATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCTTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGACGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGATCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCTGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACAGAGCTCGCGCGATCGCGAATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGTTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACAGATACGCGCATGGCGAGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCCGAGATACGTCGCTGGCGCTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGATAGCGCTAGAGCGATGAATAATCATTTTGGGAAAGGGTTAATGGCTGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGTCGGTTATCGACTCGAAGGTTGACAGATGCGCGATCGATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTCGAGATGATCGTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACACGGATGCGCCATCGGCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACATTATTGTTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTTGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/discarded-list_genomes.lst b/Examples/1-res-Annotate/discarded-list_genomes.lst
deleted file mode 100644
index 5f702471..00000000
--- a/Examples/1-res-Annotate/discarded-list_genomes.lst
+++ /dev/null
@@ -1 +0,0 @@
-orig_name gsize nb_conts L90
diff --git a/Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log b/Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log
deleted file mode 100644
index 3b96fe66..00000000
--- a/Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log
+++ /dev/null
@@ -1,9 +0,0 @@
-[2019-02-12 13:18:41] root :: INFO :: Let's start!
-[2019-02-12 13:18:41] utils :: INFO :: Reading genomes
-[2019-02-12 13:18:41] qc_annote.gseq :: INFO :: Cutting genomes at each stretch of at least 5 'N', and then, calculating genome size, number of contigs and L90.
-[2019-02-12 13:18:41] qc_annote.gseq :: INFO :: Generating distribution of L90 and #contigs graphs.
-[2019-02-12 13:18:41] utils :: INFO :: 0 genome was discarded.
-[2019-02-12 13:18:41] utils :: INFO :: Writing discarded genomes to Examples/1-res-Annotate/discarded-list_genomes.lst
-[2019-02-12 13:18:41] qc_annote.gseq :: INFO :: Renaming kept genomes according to their quality.
-[2019-02-12 13:18:41] qc_annote.prokka :: INFO :: Annotating all genomes with prokka
-[2019-02-12 13:18:54] qc_annote.ffunc :: INFO :: Formatting all genomes
diff --git a/Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log.details b/Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log.details
deleted file mode 100644
index 5e298e25..00000000
--- a/Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log.details
+++ /dev/null
@@ -1,32 +0,0 @@
-[2019-02-12 13:18:41] root :: INFO :: Let's start!
-[2019-02-12 13:18:41] utils :: INFO :: Reading genomes
-[2019-02-12 13:18:41] qc_annote.gseq :: INFO :: Cutting genomes at each stretch of at least 5 'N', and then, calculating genome size, number of contigs and L90.
-[2019-02-12 13:18:41] qc_annote.gseq :: INFO :: Generating distribution of L90 and #contigs graphs.
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: $HOME=/Users/aperrin
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: CONFIGDIR=/Users/aperrin/.matplotlib
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: matplotlib data path: /usr/local/lib/python3.7/site-packages/matplotlib/mpl-data
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: loaded rc file /usr/local/lib/python3.7/site-packages/matplotlib/mpl-data/matplotlibrc
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: matplotlib version 3.0.0
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: interactive is False
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: platform is darwin
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: loaded modules: ['sys', 'builtins', '_frozen_importlib', '_imp', '_thread', '_warnings', '_weakref', 'zipimport', '_frozen_importlib_external', '_io', 'marshal', 'posix', 'encodings', 'codecs', '_codecs', 'encodings.aliases', 'encodings.utf_8', '_signal', '__main__', 'encodings.latin_1', 'io', 'abc', '_abc', 'site', 'os', 'stat', '_stat', 'posixpath', 'genericpath', 'os.path', '_collections_abc', '_sitebuiltins', '_bootlocale', '_locale', 'types', 'importlib', 'importlib._bootstrap', 'importlib._bootstrap_external', 'warnings', 'importlib.util', 'importlib.abc', 'importlib.machinery', 'contextlib', 'collections', 'operator', '_operator', 'keyword', 'heapq', '_heapq', 'itertools', 'reprlib', '_collections', 'functools', '_functools', 'mpl_toolkits', 'sphinxcontrib', 'sitecustomize', 're', 'enum', 'sre_compile', '_sre', 'sre_parse', 'sre_constants', 'copyreg', 'pkg_resources', '__future__', 'time', 'zipfile', 'shutil', 'fnmatch', 'errno', 'zlib', 'bz2', '_compression', 'threading', 'traceback', 'linecache', 'tokenize', 'token', '_weakrefset', '_bz2', 'lzma', '_lzma', 'pwd', 'grp', 'struct', '_struct', 'binascii', 'pkgutil', 'weakref', 'platform', 'subprocess', 'signal', '_posixsubprocess', 'select', 'selectors', 'collections.abc', 'math', 'plistlib', 'datetime', '_datetime', 'xml', 'xml.parsers', 'xml.parsers.expat', 'pyexpat.errors', 'pyexpat.model', 'pyexpat', 'xml.parsers.expat.model', 'xml.parsers.expat.errors', 'email', 'email.parser', 'email.feedparser', 'email.errors', 'email._policybase', 'email.header', 'email.quoprimime', 'string', '_string', 'email.base64mime', 'base64', 'email.charset', 'email.encoders', 'quopri', 'email.utils', 'random', 'hashlib', '_hashlib', '_blake2', '_sha3', 'bisect', '_bisect', '_random', 'socket', '_socket', 'urllib', 'urllib.parse', 'email._parseaddr', 'calendar', 'locale', 'tempfile', 'textwrap', 'inspect', 'dis', 'opcode', '_opcode', 'pkg_resources.extern', 'pkg_resources._vendor', 'pkg_resources.extern.six', 'pkg_resources._vendor.six', 'pkg_resources.extern.six.moves', 'pkg_resources._vendor.six.moves', 'pkg_resources.py31compat', 'pkg_resources.extern.appdirs', 'pkg_resources._vendor.packaging.__about__', 'pkg_resources.extern.packaging', 'pkg_resources.extern.packaging.version', 'pkg_resources.extern.packaging._structures', 'pkg_resources.extern.packaging.specifiers', 'pkg_resources.extern.packaging._compat', 'pkg_resources.extern.packaging.requirements', 'copy', 'pprint', 'pkg_resources.extern.pyparsing', 'pkg_resources.extern.six.moves.urllib', 'pkg_resources.extern.packaging.markers', 'sysconfig', '_osx_support', '_sysconfigdata_m_darwin_darwin', 'email.message', 'uu', 'email._encoded_words', 'email.iterators', 'genomeAPCAT', 'genomeAPCAT.subcommands', 'genomeAPCAT.subcommands.annote', 'genomeAPCAT.subcommands.pangenome', 'genomeAPCAT.subcommands.corepers', 'genomeAPCAT.subcommands.align', 'genomeAPCAT.subcommands.tree', 'argparse', 'gettext', 'genomeAPCAT.utils', 'glob', 'logging', 'atexit', 'logging.handlers', 'pickle', '_compat_pickle', '_pickle', 'queue', '_queue', 'shlex', 'progressbar', 'progressbar.utils', 'python_utils', 'python_utils.time', 'six', 'python_utils.converters', 'python_utils.terminal', 'progressbar.shortcuts', 'progressbar.bar', 'timeit', 'gc', 'progressbar.widgets', 'progressbar.base', 'progressbar.__about__', 'multiprocessing', 'multiprocessing.context', 'multiprocessing.process', 'multiprocessing.reduction', 'array', '__mp_main__', 'genomeAPCAT.annote_module', 'genomeAPCAT.annote_module.genome_seq_functions', 'numpy', 'numpy._globals', 'numpy.__config__', 'numpy.version', 'numpy._import_tools', 'numpy.add_newdocs', 'numpy.lib', 'numpy.lib.info', 'numpy.lib.type_check', 'numpy.core', 'numpy.core.info', 'numpy.core.multiarray', 'numpy.core.umath', 'numpy.core._internal', 'numpy.compat', 'numpy.compat._inspect', 'numpy.compat.py3k', 'pathlib', 'ntpath', 'ctypes', '_ctypes', 'ctypes._endian', 'numpy.core.numerictypes', 'numbers', 'numpy.core.numeric', 'numpy.core.fromnumeric', 'numpy.core._methods', 'numpy.core.arrayprint', 'numpy.core.defchararray', 'numpy.core.records', 'numpy.core.memmap', 'numpy.core.function_base', 'numpy.core.machar', 'numpy.core.getlimits', 'numpy.core.shape_base', 'numpy.core.einsumfunc', 'numpy.testing', 'unittest', 'unittest.result', 'unittest.util', 'unittest.case', 'difflib', 'unittest.suite', 'unittest.loader', 'unittest.main', 'unittest.runner', 'unittest.signals', 'numpy.testing._private', 'numpy.testing._private.utils', 'numpy.lib.utils', 'numpy.testing._private.decorators', 'numpy.testing._private.nosetester', 'numpy.testing._private.pytesttester', 'numpy.lib.ufunclike', 'numpy.lib.index_tricks', 'numpy.lib.function_base', 'numpy.lib.twodim_base', 'numpy.lib.histograms', 'numpy.matrixlib', 'numpy.matrixlib.defmatrix', 'ast', '_ast', 'numpy.linalg', 'numpy.linalg.info', 'numpy.linalg.linalg', 'numpy.linalg.lapack_lite', 'numpy.linalg._umath_linalg', 'numpy.lib.stride_tricks', 'numpy.lib.mixins', 'numpy.lib.nanfunctions', 'numpy.lib.shape_base', 'numpy.lib.scimath', 'numpy.lib.polynomial', 'numpy.lib.arraysetops', 'numpy.lib.npyio', 'numpy.lib.format', 'numpy.lib._datasource', 'numpy.lib._iotools', 'numpy.lib.financial', 'decimal', '_decimal', 'numpy.lib.arrayterator', 'numpy.lib.arraypad', 'numpy.lib._version', 'numpy.core._multiarray_tests', 'numpy._distributor_init', 'numpy.fft', 'numpy.fft.info', 'numpy.fft.fftpack', 'numpy.fft.fftpack_lite', 'numpy.fft.helper', 'numpy.polynomial', 'numpy.polynomial.polynomial', 'numpy.polynomial.polyutils', 'numpy.polynomial._polybase', 'numpy.polynomial.chebyshev', 'numpy.polynomial.legendre', 'numpy.polynomial.hermite', 'numpy.polynomial.hermite_e', 'numpy.polynomial.laguerre', 'numpy.random', 'numpy.random.info', 'cython_runtime', 'mtrand', 'numpy.random.mtrand', 'numpy.ctypeslib', 'numpy.ma', 'numpy.ma.core', 'numpy.ma.extras', 'genomeAPCAT.annote_module.prokka_functions', 'genomeAPCAT.annote_module.format_functions', 'matplotlib', 'distutils', 'distutils.version', 'urllib.request', 'http', 'http.client', 'ssl', '_ssl', 'urllib.error', 'urllib.response', '_scproxy', 'matplotlib.cbook', 'gzip', 'matplotlib.cbook.deprecation', 'matplotlib.rcsetup', 'matplotlib.fontconfig_pattern', 'pyparsing', 'matplotlib.colors', 'matplotlib._color_data', 'cycler', 'six.moves', 'matplotlib._version', 'json', 'json.decoder', 'json.scanner', '_json', 'json.encoder', 'dateutil', 'dateutil._version']
-[2019-02-12 13:18:41] matplotlib :: DEBUG :: CACHEDIR=/Users/aperrin/.matplotlib
-[2019-02-12 13:18:41] matplotlib.font_manager :: DEBUG :: Using fontManager instance from /Users/aperrin/.matplotlib/fontlist-v300.json
-[2019-02-12 13:18:41] matplotlib.pyplot :: DEBUG :: Loaded backend agg version unknown.
-[2019-02-12 13:18:41] matplotlib.axes._base :: DEBUG :: update_title_pos
-[2019-02-12 13:18:41] matplotlib.font_manager :: DEBUG :: findfont: Matching :family=sans-serif:style=normal:variant=normal:weight=normal:stretch=normal:size=10.0 to DejaVu Sans ('/usr/local/lib/python3.7/site-packages/matplotlib/mpl-data/fonts/ttf/DejaVuSans.ttf') with score of 0.050000.
-[2019-02-12 13:18:41] matplotlib.font_manager :: DEBUG :: findfont: Matching :family=sans-serif:style=normal:variant=normal:weight=normal:stretch=normal:size=12.0 to DejaVu Sans ('/usr/local/lib/python3.7/site-packages/matplotlib/mpl-data/fonts/ttf/DejaVuSans.ttf') with score of 0.050000.
-[2019-02-12 13:18:41] matplotlib.axes._base :: DEBUG :: update_title_pos
-[2019-02-12 13:18:41] utils :: INFO :: 0 genome was discarded.
-[2019-02-12 13:18:41] utils :: INFO :: Writing discarded genomes to Examples/1-res-Annotate/discarded-list_genomes.lst
-[2019-02-12 13:18:41] qc_annote.gseq :: INFO :: Renaming kept genomes according to their quality.
-[2019-02-12 13:18:41] qc_annote.prokka :: INFO :: Annotating all genomes with prokka
-[2019-02-12 13:18:41] run_prokka :: DETAIL :: Start annotating EXAM.0219.00001 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
-[2019-02-12 13:18:45] run_prokka :: DETAIL :: End annotating EXAM.0219.00001 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
-[2019-02-12 13:18:45] run_prokka :: DETAIL :: Start annotating GEN2.0219.00001 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
-[2019-02-12 13:18:48] run_prokka :: DETAIL :: End annotating GEN2.0219.00001 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
-[2019-02-12 13:18:48] run_prokka :: DETAIL :: Start annotating EXAM.1216.00002 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
-[2019-02-12 13:18:51] run_prokka :: DETAIL :: End annotating EXAM.1216.00002 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
-[2019-02-12 13:18:51] run_prokka :: DETAIL :: Start annotating GEN4.1111.00001 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
-[2019-02-12 13:18:54] run_prokka :: DETAIL :: End annotating GEN4.1111.00001 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
-[2019-02-12 13:18:54] qc_annote.ffunc :: INFO :: Formatting all genomes
diff --git a/Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log.err b/Examples/1-res-Annotate/genomeAPCAT-annotate_list_genomes.log.err
deleted file mode 100644
index e69de29b..00000000
diff --git a/Examples/1-res-Annotate/gff3/EXAM.0219.00001.gff b/Examples/1-res-Annotate/gff3/EXAM.0219.00001.gff
deleted file mode 100644
index 32eed51c..00000000
--- a/Examples/1-res-Annotate/gff3/EXAM.0219.00001.gff
+++ /dev/null
@@ -1,12 +0,0 @@
-##gff-version 3
-EXAM.0219.00001.0001 Prodigal:2.6 CDS 213 1880 . + . ID=EXAM.0219.00001.b0001_00001;eC_number=6.1.1.18;Name=glnS;gene=glnS;inference=similar to AA sequence:UniProtKB:P00962;locus_tag=EXAM.0219.00001.b0001_00001;product=Glutamine--tRNA ligase
-EXAM.0219.00001.0001 Prodigal:2.6 CDS 1916 2746 . + . ID=EXAM.0219.00001.b0001_00002;eC_number=3.5.1.28;Name=amiD;gene=amiD;inference=similar to AA sequence:UniProtKB:P75820;locus_tag=EXAM.0219.00001.b0001_00002;product=N-acetylmuramoyl-L-alanine amidase AmiD
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 16 396 . + . ID=EXAM.0219.00001.b0002_00003;eC_number=5.3.3.10;Name=hpcD;gene=hpcD;inference=similar to AA sequence:UniProtKB:Q05354;locus_tag=EXAM.0219.00001.b0002_00003;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 428 1837 . + . ID=EXAM.0219.00001.i0002_00004;locus_tag=EXAM.0219.00001.i0002_00004;product=hypothetical protein
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 1869 2642 . + . ID=EXAM.0219.00001.i0002_00005;Name=hisP;gene=hisP;inference=similar to AA sequence:UniProtKB:P02915;locus_tag=EXAM.0219.00001.i0002_00005;product=Histidine transport ATP-binding protein HisP
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 2709 3443 . + . ID=EXAM.0219.00001.i0002_00006;eC_number=2.1.1.228;Name=trmD_1;gene=trmD_1;inference=similar to AA sequence:UniProtKB:P0A873;locus_tag=EXAM.0219.00001.i0002_00006;product=tRNA (guanine-N(1)-)-methyltransferase
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 3427 4254 . + . ID=EXAM.0219.00001.i0002_00007;eC_number=2.1.1.228;Name=trmD_2;gene=trmD_2;inference=similar to AA sequence:UniProtKB:P0A873;locus_tag=EXAM.0219.00001.i0002_00007;product=tRNA (guanine-N(1)-)-methyltransferase
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 4299 4763 . + . ID=EXAM.0219.00001.i0002_00008;locus_tag=EXAM.0219.00001.i0002_00008;product=hypothetical protein
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 4818 5078 . + . ID=EXAM.0219.00001.i0002_00009;locus_tag=EXAM.0219.00001.i0002_00009;product=hypothetical protein
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 5117 5698 . + . ID=EXAM.0219.00001.i0002_00010;locus_tag=EXAM.0219.00001.i0002_00010;product=hypothetical protein
-EXAM.0219.00001.0002 Prodigal:2.6 CDS 5717 7024 . + . ID=EXAM.0219.00001.b0002_00011;Name=dctM;gene=dctM;inference=similar to AA sequence:UniProtKB:O07838;locus_tag=EXAM.0219.00001.b0002_00011;product=C4-dicarboxylate TRAP transporter large permease protein DctM
diff --git a/Examples/1-res-Annotate/gff3/EXAM.1216.00002.gff b/Examples/1-res-Annotate/gff3/EXAM.1216.00002.gff
deleted file mode 100644
index cc778abd..00000000
--- a/Examples/1-res-Annotate/gff3/EXAM.1216.00002.gff
+++ /dev/null
@@ -1,13 +0,0 @@
-##gff-version 3
-EXAM.1216.00002.0001 Prodigal:2.6 CDS 1 831 . + . ID=EXAM.1216.00002.b0001_00001;eC_number=3.5.1.28;Name=amiD_1;gene=amiD_1;inference=similar to AA sequence:UniProtKB:P75820;locus_tag=EXAM.1216.00002.b0001_00001;product=N-acetylmuramoyl-L-alanine amidase AmiD
-EXAM.1216.00002.0001 Prodigal:2.6 CDS 880 1710 . + . ID=EXAM.1216.00002.i0001_00002;eC_number=3.5.1.28;Name=amiD_2;gene=amiD_2;inference=similar to AA sequence:UniProtKB:P75820;locus_tag=EXAM.1216.00002.i0001_00002;product=N-acetylmuramoyl-L-alanine amidase AmiD
-EXAM.1216.00002.0001 Prodigal:2.6 CDS 1655 2128 . + . ID=EXAM.1216.00002.i0001_00003;eC_number=5.3.3.10;Name=hpcD;gene=hpcD;inference=similar to AA sequence:UniProtKB:Q05354;locus_tag=EXAM.1216.00002.i0001_00003;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-EXAM.1216.00002.0001 Prodigal:2.6 CDS 2172 2396 . + . ID=EXAM.1216.00002.i0001_00004;Name=pspB;gene=pspB;inference=similar to AA sequence:UniProtKB:P0AFM9;locus_tag=EXAM.1216.00002.i0001_00004;product=Phage shock protein B
-EXAM.1216.00002.0001 Prodigal:2.6 CDS 2425 3828 . + . ID=EXAM.1216.00002.i0001_00005;locus_tag=EXAM.1216.00002.i0001_00005;product=hypothetical protein
-EXAM.1216.00002.0001 Prodigal:2.6 CDS 3863 4636 . + . ID=EXAM.1216.00002.i0001_00006;Name=hisP;gene=hisP;inference=similar to AA sequence:UniProtKB:P02915;locus_tag=EXAM.1216.00002.i0001_00006;product=Histidine transport ATP-binding protein HisP
-EXAM.1216.00002.0001 Prodigal:2.6 CDS 4641 5432 . + . ID=EXAM.1216.00002.i0001_00007;eC_number=2.1.1.228;Name=trmD;gene=trmD;inference=similar to AA sequence:UniProtKB:P0A873;locus_tag=EXAM.1216.00002.i0001_00007;product=tRNA (guanine-N(1)-)-methyltransferase
-EXAM.1216.00002.0001 Prodigal:2.6 CDS 5460 5747 . + . ID=EXAM.1216.00002.b0001_00008;locus_tag=EXAM.1216.00002.b0001_00008;product=hypothetical protein
-EXAM.1216.00002.0002 Prodigal:2.6 CDS 1 582 . + . ID=EXAM.1216.00002.b0002_00009;locus_tag=EXAM.1216.00002.b0002_00009;product=hypothetical protein
-EXAM.1216.00002.0002 Prodigal:2.6 CDS 629 1936 . + . ID=EXAM.1216.00002.b0002_00010;Name=dctM;gene=dctM;inference=similar to AA sequence:UniProtKB:O07838;locus_tag=EXAM.1216.00002.b0002_00010;product=C4-dicarboxylate TRAP transporter large permease protein DctM
-EXAM.1216.00002.0003 Prodigal:2.6 CDS 26 280 . + . ID=EXAM.1216.00002.b0003_00011;locus_tag=EXAM.1216.00002.b0003_00011;product=hypothetical protein
-EXAM.1216.00002.0003 Prodigal:2.6 CDS 323 1102 . + . ID=EXAM.1216.00002.b0003_00012;inference=similar to AA sequence:UniProtKB:Q45619;locus_tag=EXAM.1216.00002.b0003_00012;product=Insertion sequence IS5376 putative ATP-binding protein
diff --git a/Examples/1-res-Annotate/gff3/GEN2.0219.00001.gff b/Examples/1-res-Annotate/gff3/GEN2.0219.00001.gff
deleted file mode 100644
index cfa099ce..00000000
--- a/Examples/1-res-Annotate/gff3/GEN2.0219.00001.gff
+++ /dev/null
@@ -1,14 +0,0 @@
-##gff-version 3
-GEN2.0219.00001.0001 Prodigal:2.6 CDS 1 774 . + . ID=GEN2.0219.00001.b0001_00001;Name=hisP;gene=hisP;inference=similar to AA sequence:UniProtKB:P02915;locus_tag=GEN2.0219.00001.b0001_00001;product=Histidine transport ATP-binding protein HisP
-GEN2.0219.00001.0001 Prodigal:2.6 CDS 857 2260 . + . ID=GEN2.0219.00001.b0001_00002;locus_tag=GEN2.0219.00001.b0001_00002;product=hypothetical protein
-GEN2.0219.00001.0002 Prodigal:2.6 CDS 28 252 . + . ID=GEN2.0219.00001.b0002_00003;Name=pspB;gene=pspB;inference=similar to AA sequence:UniProtKB:P0AFM9;locus_tag=GEN2.0219.00001.b0002_00003;product=Phage shock protein B
-GEN2.0219.00001.0002 Prodigal:2.6 CDS 301 681 . + . ID=GEN2.0219.00001.i0002_00004;eC_number=5.3.3.10;Name=hpcD;gene=hpcD;inference=similar to AA sequence:UniProtKB:Q05354;locus_tag=GEN2.0219.00001.i0002_00004;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-GEN2.0219.00001.0002 Prodigal:2.6 CDS 764 1597 . + . ID=GEN2.0219.00001.i0002_00005;eC_number=3.5.1.28;Name=amiD;gene=amiD;inference=similar to AA sequence:UniProtKB:P75820;locus_tag=GEN2.0219.00001.i0002_00005;product=N-acetylmuramoyl-L-alanine amidase AmiD
-GEN2.0219.00001.0002 Prodigal:2.6 CDS 1628 3295 . + . ID=GEN2.0219.00001.b0002_00006;eC_number=6.1.1.18;Name=glnS;gene=glnS;inference=similar to AA sequence:UniProtKB:P00962;locus_tag=GEN2.0219.00001.b0002_00006;product=Glutamine--tRNA ligase
-GEN2.0219.00001.0003 Prodigal:2.6 CDS 30 797 . + . ID=GEN2.0219.00001.b0003_00007;eC_number=2.1.1.228;Name=trmD;gene=trmD;inference=similar to AA sequence:UniProtKB:P0A873;locus_tag=GEN2.0219.00001.b0003_00007;product=tRNA (guanine-N(1)-)-methyltransferase
-GEN2.0219.00001.0003 Prodigal:2.6 CDS 862 1122 . + . ID=GEN2.0219.00001.i0003_00008;locus_tag=GEN2.0219.00001.i0003_00008;product=hypothetical protein
-GEN2.0219.00001.0003 Prodigal:2.6 CDS 1170 1751 . + . ID=GEN2.0219.00001.i0003_00009;locus_tag=GEN2.0219.00001.i0003_00009;product=hypothetical protein
-GEN2.0219.00001.0003 Prodigal:2.6 CDS 1895 2263 . + . ID=GEN2.0219.00001.b0003_00010;locus_tag=GEN2.0219.00001.b0003_00010;product=hypothetical protein
-GEN2.0219.00001.0004 Prodigal:2.6 CDS 1 1308 . + . ID=GEN2.0219.00001.b0004_00011;Name=dctM;gene=dctM;inference=similar to AA sequence:UniProtKB:O07838;locus_tag=GEN2.0219.00001.b0004_00011;product=C4-dicarboxylate TRAP transporter large permease protein DctM
-GEN2.0219.00001.0004 Prodigal:2.6 CDS 1340 1804 . + . ID=GEN2.0219.00001.i0004_00012;locus_tag=GEN2.0219.00001.i0004_00012;product=hypothetical protein
-GEN2.0219.00001.0004 Prodigal:2.6 CDS 1832 2845 . + . ID=GEN2.0219.00001.b0004_00013;Name=xerC;gene=xerC;inference=similar to AA sequence:UniProtKB:P39776;locus_tag=GEN2.0219.00001.b0004_00013;product=Tyrosine recombinase XerC
diff --git a/Examples/1-res-Annotate/gff3/GEN4.1111.00001.gff b/Examples/1-res-Annotate/gff3/GEN4.1111.00001.gff
deleted file mode 100644
index 501e70cf..00000000
--- a/Examples/1-res-Annotate/gff3/GEN4.1111.00001.gff
+++ /dev/null
@@ -1,10 +0,0 @@
-##gff-version 3
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 1 831 . + . ID=GEN4.1111.00001.b0001_00001;eC_number=3.5.1.28;Name=amiD;gene=amiD;inference=similar to AA sequence:UniProtKB:P75820;locus_tag=GEN4.1111.00001.b0001_00001;product=N-acetylmuramoyl-L-alanine amidase AmiD
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 861 1241 . + . ID=GEN4.1111.00001.i0001_00002;eC_number=5.3.3.10;Name=hpcD;gene=hpcD;inference=similar to AA sequence:UniProtKB:Q05354;locus_tag=GEN4.1111.00001.i0001_00002;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 1271 2074 . + . ID=GEN4.1111.00001.i0001_00003;eC_number=4.2.1.163;Name=hpcG;gene=hpcG;inference=similar to AA sequence:UniProtKB:P42270;locus_tag=GEN4.1111.00001.i0001_00003;product=2-oxo-hept-4-ene-1,7-dioate hydratase
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 2111 3514 . + . ID=GEN4.1111.00001.i0001_00004;locus_tag=GEN4.1111.00001.i0001_00004;product=hypothetical protein
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 3535 4308 . + . ID=GEN4.1111.00001.i0001_00005;Name=hisP;gene=hisP;inference=similar to AA sequence:UniProtKB:P02915;locus_tag=GEN4.1111.00001.i0001_00005;product=Histidine transport ATP-binding protein HisP
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 4327 5094 . + . ID=GEN4.1111.00001.i0001_00006;eC_number=2.1.1.228;Name=trmD;gene=trmD;inference=similar to AA sequence:UniProtKB:P0A873;locus_tag=GEN4.1111.00001.i0001_00006;product=tRNA (guanine-N(1)-)-methyltransferase
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 5138 5398 . + . ID=GEN4.1111.00001.i0001_00007;locus_tag=GEN4.1111.00001.i0001_00007;product=hypothetical protein
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 5413 5994 . + . ID=GEN4.1111.00001.i0001_00008;locus_tag=GEN4.1111.00001.i0001_00008;product=hypothetical protein
-GEN4.1111.00001.0001 Prodigal:2.6 CDS 6052 7134 . + . ID=GEN4.1111.00001.b0001_00009;Name=dctM;gene=dctM;inference=similar to AA sequence:UniProtKB:O07838;locus_tag=GEN4.1111.00001.b0001_00009;product=C4-dicarboxylate TRAP transporter large permease protein DctM
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
deleted file mode 100644
index 11feaae3..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
+++ /dev/null
@@ -1,4 +0,0 @@
->genome1_1
-ATGTGTAAAAGCCGGAGGGGTTATCTTTTCCCGGCTTTTTATTATCAATTACTCATTAACTCCTGTTCCGTTCTTTTGCGTTTAATCACCGGAATATCTCCGGTATTGTTCAGCGCCCCGGAAATGTTTTTAACCACTGTTCTGCACTCCGTTTATTAAACGCGCTCAGCGCGCGCTCATATATCGCGCGCGCGCGCGCGCATATATATATAATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCATATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTACGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCCTCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTAATCAATAAAGGCCTGGCCTATGTTGATGAGCTGACGCCGGAGCAGATCCGTGAATACCGCGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTCGAAGAGAACCTCGCGCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCGTCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACTGGCAACAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGATAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTCGCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACACGTCGAAGGTTGGGACGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGAAAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAATTACCCGCAGGGTGAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCAGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGATGCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGCAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAATCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGAAAAGCTTTCCAGTTTGAACGTGAAGGCTACTTCTGCCTCGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAGTAACGCGCATAGGCGGCCTTCAAGGAGGCGCTAGGCGAATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGTGGTTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGATATTATCGCGCGCTATAACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTAGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCACGCGAGCAGCAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATAGGCGCGCGAGATTACGCGCGCAGTATCGCGC
->genome1_2
-CGCGCATAGCGCGCAATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTTGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGATATGAGGCGCGGCGCTATAAGGCGCTCATGAGCATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGATGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTAATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGGTTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGCAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTACGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGAATTCCGCGGCATATAGCGGCGCGATAGCATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGATGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTCAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGTGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACGCTCAGAGGCGCGCGCGCGCTATATACGCGCAGTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCCGTCATATGGGCTCTCAGAGGAGACGCGCTAATGCGCAGTACGTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGCATACGCGCGCGATATATATTCGCGCAGAGGCGCGCATAGCGATGAAGTTTGTTGCGCCCGAACAGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCGTTCTGGCCTGATGTGGACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGTACCGCACTGTACGGTGGAGCTTATCTGAACGGCTAGCGCGTAGCGGCAGTCTCGGATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGACGATCGCGCGCAGGAGGAGAGCTCTCTTCTTCTAGAGCATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAGCTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGTATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACGGCTATGCGCGCGCTCGATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTACGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGTATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATTGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCAATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokka.log b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokka.log
deleted file mode 100644
index 6aa806da..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokka.log
+++ /dev/null
@@ -1,121 +0,0 @@
-[13:18:42] This is prokka 1.14-dev
-[13:18:42] Written by Torsten Seemann <torsten.seemann@gmail.com>
-[13:18:42] Homepage is https://github.com/tseemann/prokka
-[13:18:42] Local time is Tue Feb 12 13:18:42 2019
-[13:18:42] You are aperrin
-[13:18:42] Operating system is darwin
-[13:18:42] You have BioPerl 1.006924
-[13:18:42] System has 8 cores.
-[13:18:42] Will use maximum of 1 cores.
-[13:18:42] Annotating as >>> Bacteria <<<
-[13:18:42] Generating locus_tag from 'Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna' contents.
-[13:18:42] Setting --locustag GKEGNCBE from MD5 04e07cbef9b8a6b8d550f0d6ed3a8746
-[13:18:42] Creating new output folder: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes
-[13:18:42] Running: mkdir -p Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes
-[13:18:42] Using filename prefix: EXAM.0219.00001.XXX
-[13:18:42] Setting HMMER_NCPU=1
-[13:18:42] Writing log to: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.log
-[13:18:42] Command: /usr/local/bin/prokka --outdir Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes --cpus 1 --prefix EXAM.0219.00001 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
-[13:18:42] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin
-[13:18:42] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common
-[13:18:42] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin
-[13:18:42] Looking for 'aragorn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/aragorn
-[13:18:42] Determined aragorn version is 1.2
-[13:18:42] Looking for 'barrnap' - found /usr/local/bin/barrnap
-[13:18:42] Determined barrnap version is 0.8
-[13:18:42] Looking for 'blastp' - found /Users/aperrin/Softwares/bin/blastp
-[13:18:42] Determined blastp version is 2.3
-[13:18:42] Looking for 'cmpress' - found /usr/local/bin/cmpress
-[13:18:42] Determined cmpress version is 1.1
-[13:18:42] Looking for 'cmscan' - found /usr/local/bin/cmscan
-[13:18:42] Determined cmscan version is 1.1
-[13:18:42] Looking for 'egrep' - found /usr/bin/egrep
-[13:18:42] Looking for 'find' - found /usr/bin/find
-[13:18:42] Looking for 'grep' - found /usr/bin/grep
-[13:18:42] Looking for 'hmmpress' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/hmmpress
-[13:18:42] Determined hmmpress version is 3.1
-[13:18:42] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
-[13:18:42] Determined hmmscan version is 3.1
-[13:18:42] Looking for 'java' - found /usr/bin/java
-[13:18:42] Looking for 'less' - found /usr/bin/less
-[13:18:42] Looking for 'makeblastdb' - found /Users/aperrin/Softwares/bin/makeblastdb
-[13:18:42] Determined makeblastdb version is 2.3
-[13:18:42] Looking for 'minced' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common/minced
-[13:18:42] Determined minced version is 2.0
-[13:18:42] Looking for 'parallel' - found /usr/local/bin/parallel
-[13:18:42] Determined parallel version is 20181022
-[13:18:42] Looking for 'prodigal' - found /usr/local/bin/prodigal
-[13:18:42] Determined prodigal version is 2.6
-[13:18:42] Looking for 'prokka-genbank_to_fasta_db' - found /Users/aperrin/Softwares/src/prokka/bin/prokka-genbank_to_fasta_db
-[13:18:42] Looking for 'sed' - found /usr/bin/sed
-[13:18:42] Looking for 'tbl2asn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/tbl2asn
-[13:18:42] Determined tbl2asn version is 25.6
-[13:18:42] Using genetic code table 11.
-[13:18:42] Loading and checking input file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
-[13:18:42] Wrote 2 contigs totalling 9808 bp.
-[13:18:42] Predicting tRNAs and tmRNAs
-[13:18:42] Running: aragorn -l -gc11 -w Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.fna
-[13:18:42] Found 0 tRNAs
-[13:18:42] Predicting Ribosomal RNAs
-[13:18:42] Running Barrnap with 1 threads
-[13:18:42] Found 0 rRNAs
-[13:18:42] Skipping ncRNA search, enable with --rfam if desired.
-[13:18:42] Total of 0 tRNA + rRNA features
-[13:18:42] Searching for CRISPR repeats
-[13:18:43] Found 0 CRISPRs
-[13:18:43] Predicting coding sequences
-[13:18:43] Contigs total 9808 bp, so using meta mode
-[13:18:43] Running: prodigal -i Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.fna -c -m -g 11 -p meta -f sco -q
-[13:18:43] Found 11 CDS
-[13:18:43] Connecting features back to sequences
-[13:18:43] Not using genus-specific database. Try --usegenus to enable it.
-[13:18:43] Annotating CDS, please be patient.
-[13:18:43] Will use 1 CPUs for similarity searching.
-[13:18:43] There are still 11 unannotated CDS left (started with 11)
-[13:18:43] Will use blast to search against /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot with 1 CPUs
-[13:18:43] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/sprot\.faa | parallel --gnu --plain -j 1 --block 1558 --recstart '>' --pipe blastp -query - -db /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/sprot\.blast 2> /dev/null
-[13:18:44] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/sprot.faa
-[13:18:44] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/sprot.blast
-[13:18:44] There are still 4 unannotated CDS left (started with 11)
-[13:18:44] Will use hmmer3 to search against /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm with 1 CPUs
-[13:18:44] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 1 --block 459 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm /dev/stdin > Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.hmmer3 2> /dev/null
-[13:18:44] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/HAMAP.hmm.faa
-[13:18:44] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/HAMAP.hmm.hmmer3
-[13:18:44] Labelling remaining 4 proteins as 'hypothetical protein'
-[13:18:44] Possible /pseudo 'tRNA (guanine-N(1)-)-methyltransferase' at genome1_2 position 3427
-[13:18:44] Found 6 unique /gene codes.
-[13:18:44] Fixed 2 duplicate /gene - trmD_1 trmD_2
-[13:18:44] Fixed 1 colliding /gene names.
-[13:18:44] Adding /locus_tag identifiers
-[13:18:44] Assigned 11 locus_tags to CDS and RNA features.
-[13:18:44] Writing outputs to Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/
-[13:18:44] Generating annotation statistics file
-[13:18:44] Generating Genbank and Sequin files
-[13:18:44] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka' -Z Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.err -i Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.fsa 2> /dev/null
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/errorsummary.val
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.dr
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fixedproducts
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.ecn
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.val
-[13:18:45] Repairing broken .GBK output that tbl2asn produces...
-[13:18:45] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.gbf > Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.gbk
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gbf
-[13:18:45] Output files:
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.txt
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tsv
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fna
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.err
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gff
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.sqn
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tbl
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gbk
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.log
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.ffn
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.faa
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fsa
-[13:18:45] Annotation finished successfully.
-[13:18:45] Walltime used: 0.05 minutes
-[13:18:45] If you use this result please cite the Prokka paper:
-[13:18:45] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
-[13:18:45] Type 'prokka --citation' for more details.
-[13:18:45] Share and enjoy!
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.err b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.err
deleted file mode 100644
index 9837b5a1..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.err
+++ /dev/null
@@ -1,126 +0,0 @@
-Discrepancy Report Results
-
-Summary
-FATAL: MISSING_PROTEIN_ID:11 proteins have invalid IDs.
-DISC_SOURCE_QUALS_ASNDISC:strain (all present, all same)
-DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
-DISC_FEATURE_COUNT:CDS: 11 present
-DISC_COUNT_NUCLEOTIDES:2 nucleotide Bioseqs are present
-FEATURE_LOCATION_CONFLICT:11 features have inconsistent gene locations.
-OVERLAPPING_CDS:2 coding regions overlap another coding region with a similar or identical name.
-DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
-ONCALLER_COMMENT_PRESENT:2 comment descriptors were found (all same)
-MISSING_GENOMEASSEMBLY_COMMENTS:2 bioseqs are missing GenomeAssembly structured comments
-MOLTYPE_NOT_MRNA:2 molecule types are not set as mRNA.
-TECHNIQUE_NOT_TSA:2 technique are not set as TSA
-MISSING_STRUCTURED_COMMENT:2 sequences do not include structured comments.
-MISSING_PROJECT:13 sequences do not include project.
-DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
-
-
-Detailed Report
-
-FATAL: DiscRep_ALL:MISSING_PROTEIN_ID::11 proteins halid nvalid IDs.
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1_1 (length 555)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1_2 (length 276)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_1 (length 126)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_2 (length 469)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_3 (length 257)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_4 (length 244)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_5 (length 275)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_6 (length 154)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_7 (length 86)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_8 (length 193)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_9 (length 435)
-
-DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all same)
-DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::2 sources have 'strain' for strain
-DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
-DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::2 sources have 'Genus species' for taxname
-DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 11 present
-DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::2 nucleotide Bioseqs are present
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1 (length 2784)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2 (length 7024)
-
-DiscRep_ALL:FEATURE_LOCATION_CONFLICT::11 features have inconsistent gene locations.
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS Glutamine--tRNA ligase genome1_1:213-1880 GKEGNCBE_00001
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS N-acetylmuramoyl-L-alanine amidase AmiD genome1_1:1916-2746 GKEGNCBE_00002
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS 5-carboxymethyl-2-hydroxymuconate Delta-isomerase genome1_2:16-396 GKEGNCBE_00003
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS hypothetical protein genome1_2:428-1837 GKEGNCBE_00004
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS Histidine transport ATP-binding protein HisP genome1_2:1869-2642 GKEGNCBE_00005
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS tRNA (guanine-N(1)-)-methyltransferase genome1_2:2709-3443 GKEGNCBE_00006
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS tRNA (guanine-N(1)-)-methyltransferase genome1_2:3427-4254 GKEGNCBE_00007
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS hypothetical protein genome1_2:4299-4763 GKEGNCBE_00008
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS hypothetical protein genome1_2:4818-5078 GKEGNCBE_00009
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS hypothetical protein genome1_2:5117-5698 GKEGNCBE_00010
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS C4-dicarboxylate TRAP transporter large permease protein DctM genome1_2:5717-7024 GKEGNCBE_00011
-
-DiscRep_ALL:OVERLAPPING_CDS::2 coding regions overlap another coding region with a similar or identical name.
-DiscRep_SUB:OVERLAPPING_CDS::2 coding regions overlap another coding region with a similar or identical name that do not have the appropriate note text
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS tRNA (guanine-N(1)-)-methyltransferase genome1_2:2709-3443 GKEGNCBE_00006
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:CDS tRNA (guanine-N(1)-)-methyltransferase genome1_2:3427-4254 GKEGNCBE_00007
-
-DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
-
-DiscRep_ALL:ONCALLER_COMMENT_PRESENT::2 comment descriptors were found (all same)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-
-DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::2 bioseqs are missing GenomeAssembly structured comments
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1 (length 2784)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2 (length 7024)
-
-DiscRep_ALL:MOLTYPE_NOT_MRNA::2 molecule types are not set as mRNA.
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1 (length 2784)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2 (length 7024)
-
-DiscRep_ALL:TECHNIQUE_NOT_TSA::2 technique are not set as TSA
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1 (length 2784)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2 (length 7024)
-
-DiscRep_ALL:MISSING_STRUCTURED_COMMENT::2 sequences do not include structured comments.
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1 (length 2784)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2 (length 7024)
-
-DiscRep_ALL:MISSING_PROJECT::13 sequences do not include project.
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1 (length 2784)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1_1 (length 555)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1_2 (length 276)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2 (length 7024)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_1 (length 126)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_2 (length 469)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_3 (length 257)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_4 (length 244)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_5 (length 275)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_6 (length 154)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_7 (length 86)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_8 (length 193)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2_9 (length 435)
-
-DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
-DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
-DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::2 Molinfos are missing field technique
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_1 (length 2784)
-Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001:genome1_2 (length 7024)
-
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.faa b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.faa
deleted file mode 100644
index 2bb9f621..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.faa
+++ /dev/null
@@ -1,69 +0,0 @@
->GKEGNCBE_00001 Glutamine--tRNA ligase
-MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQG
-QCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSDYFDQLHAYAVELINKGLA
-YVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMA
-SPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRL
-YDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR
-GYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQG
-ESEMVTMPNHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLVMGKEVRLRNAYVIK
-AERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPIEIRLYDRLFSV
-PNPGAAEDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADKLVF
-NRTVGLRDTWAKAGE
->GKEGNCBE_00002 N-acetylmuramoyl-L-alanine amidase AmiD
-MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSL
-ATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIEL
-ENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYNIKPQNVVAHADIAPQRKDDPGPR
-FPWRELAAQGISAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQR
-VIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->GKEGNCBE_00003 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADGKHDYA
-FVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNN
-VHALFK
->GKEGNCBE_00004 hypothetical protein
-MSMPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQAFAD
-GQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNV
-TLDVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQ
-MDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERINCTNGKINWGIGIGLAGSTY
-DNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPGFSKNAGIDNATI
-AIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQI
-SSGNTPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQ
-FMARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
->GKEGNCBE_00005 Histidine transport ATP-binding protein HisP
-MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG
-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV
-LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT
-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF
-GNPQSPRLQQFLKGSLK
->GKEGNCBE_00006 tRNA (guanine-N(1)-)-methyltransferase
-MFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGMLMMVQPLRDAI
-HAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDERVIQTEIDEEW
-SIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGME
-VPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKH
-DGMA
->GKEGNCBE_00007 tRNA (guanine-N(1)-)-methyltransferase
-MMGWHSRHMGSQRRRANAQYVFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRD
-FAHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVS
-ELATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVL
-GHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRR
-PELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA
->GKEGNCBE_00008 hypothetical protein
-MKFVAPEQAPEQAEVIKNTPFWPDVDLSEFRSVMRTDGTVTQPRLKQVVLTAISEVNAEL
-YDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWARAVLNERYQDYDATASGVK
-RGEELAEASGDLWRDARWAISRVQDVPHCTVELI
->GKEGNCBE_00009 hypothetical protein
-MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRYGLDKE
-MVMDFFKENHSGMAVRFFMAGYRLEG
->GKEGNCBE_00010 hypothetical protein
-MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLVLEHGG
-APLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
-HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLYYRQAVAYYASCRQTVTEGGNHAFTGFEDY
-FNQIVDFLGLHSC
->GKEGNCBE_00011 C4-dicarboxylate TRAP transporter large permease protein DctM
-MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS
-FALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIA
-ASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFA
-GGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
-GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSM
-SITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGV
-DPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITY
-IPEITLFLPRLLGIM
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.ffn b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.ffn
deleted file mode 100644
index 8bf92ebb..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.ffn
+++ /dev/null
@@ -1,169 +0,0 @@
->GKEGNCBE_00001 Glutamine--tRNA ligase
-ATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTG
-GCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTG
-CATATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGC
-CAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTACGTTGAT
-TCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCC
-TCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTAATCAATAAAGGCCTGGCC
-TATGTTGATGAGCTGACGCCGGAGCAGATCCGTGAATACCGCGGTACGCTGACCGCGCCG
-GGTAAAAACAGCCCGTTCCGCGATCGCAGCGTCGAAGAGAACCTCGCGCTATTTGAAAAA
-ATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCG
-TCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCAT
-CAGACTGGCAACAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGAT
-GCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGATAACCGTCGTCTG
-TACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTCG
-CGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGAC
-AAACACGTCGAAGGTTGGGACGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGC
-GGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGAC
-AACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGAAAACGCG
-CCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAATTACCCGCAGGGT
-GAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAA
-GTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCAGATTTCCGCGAAGAAGCGAACAAA
-CAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGTCATTAAA
-GCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGAT
-GCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGG
-GTTAGCGCAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTG
-CCGAATCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATTAGTGATT
-AAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGAAAAGCTTTCCAGTTT
-GAACGTGAAGGCTACTTCTGCCTCGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTT
-AACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAGTAA
->GKEGNCBE_00002 N-acetylmuramoyl-L-alanine amidase AmiD
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGTGGTTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGATATTATCGCGCGCTATAACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTAGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCACGCGAGCAGCAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->GKEGNCBE_00003 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG
-TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTT
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAG
->GKEGNCBE_00004 hypothetical protein
-ATGAGCATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTT
-GCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTC
-GATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGAC
-GGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACG
-ATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGG
-TTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTG
-ACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGC
-CCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATC
-GATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAA
-ATGGATGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAG
-TGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATT
-AATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTAT
-GACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGA
-TCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTC
-AAAGCCAAAAACATCACGCCCGGTTTCAGTAAAAATGCGGGTATTGATAACGCAACGATC
-GCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGG
-ATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAA
-TTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATT
-TCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACG
-CTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGCAATATCAACGTGATGCAAACT
-TCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTACGTGGTCAA
-TTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAAC
-GGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTG
-AATTTTTCGCTGCCGAAGCGGGGAGGGTAA
->GKEGNCBE_00005 Histidine transport ATP-binding protein HisP
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCC
-GGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGATGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTCAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCTCGCCATGTCTCTTCG
-CACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGTGATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
->GKEGNCBE_00006 tRNA (guanine-N(1)-)-methyltransferase
-ATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTG
-AACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGAC
-CGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATT
-CACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGA
-CGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTG
-TGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGG
-TCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCC
-GTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTT
-GCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAA
-GTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAG
-TCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAA
-GAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACAT
-GATGGGATGGCATAG
->GKEGNCBE_00007 tRNA (guanine-N(1)-)-methyltransferase
-ATGATGGGATGGCATAGCCGTCATATGGGCTCTCAGAGGAGACGCGCTAATGCGCAGTAC
-GTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGG
-GTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGAC
-TTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATG
-TTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAA
-GGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGC
-GAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAG
-CGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGT
-GGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTG
-GGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCAC
-TATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAAC
-CATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGA
-CCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTC
-AAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAG
->GKEGNCBE_00008 hypothetical protein
-ATGAAGTTTGTTGCGCCCGAACAGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCG
-TTCTGGCCTGATGTGGACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTG
-ACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTG
-TACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCA
-GAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGG
-GCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAG
-CGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATC
-AGCCGGGTGCAGGATGTACCGCACTGTACGGTGGAGCTTATCTGA
->GKEGNCBE_00009 hypothetical protein
-ATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCT
-GAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGAT
-CGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAA
-ATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCC
-GGTTATCGACTCGAAGGTTGA
->GKEGNCBE_00010 hypothetical protein
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAGCTG
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGTATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
->GKEGNCBE_00011 C4-dicarboxylate TRAP transporter large permease protein DctM
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTC
-TCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCC
-GCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTACGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGTATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATT
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCAATCATGGCTAAACTGGGCGTC
-GATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTG
-ATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fna b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fna
deleted file mode 100644
index 325b3340..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fna
+++ /dev/null
@@ -1,167 +0,0 @@
->genome1_1
-ATGTGTAAAAGCCGGAGGGGTTATCTTTTCCCGGCTTTTTATTATCAATTACTCATTAAC
-TCCTGTTCCGTTCTTTTGCGTTTAATCACCGGAATATCTCCGGTATTGTTCAGCGCCCCG
-GAAATGTTTTTAACCACTGTTCTGCACTCCGTTTATTAAACGCGCTCAGCGCGCGCTCAT
-ATATCGCGCGCGCGCGCGCGCATATATATATAATGAGTGAGGCTGAAGCCCGCCCGACTA
-ACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGTGGTAAACATACCACTGTCCATA
-CCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCATATCGGCCACGCGAAATCTATCTGCC
-TGAACTTTGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCA
-ACCCGGTAAAAGAAGATATCGAGTACGTTGATTCGATCAAAAACGACGTCGAGTGGTTAG
-GCTTTCACTGGTCTGGCGATATTCGCTACTCCTCCGATTACTTTGACCAACTGCACGCCT
-ATGCGGTCGAGCTAATCAATAAAGGCCTGGCCTATGTTGATGAGCTGACGCCGGAGCAGA
-TCCGTGAATACCGCGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCA
-GCGTCGAAGAGAACCTCGCGCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTA
-AAGCCTGTCTGCGCGCTAAAATCGACATGGCGTCGCCGTTTATCGTGATGCGCGATCCGG
-TGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACTGGCAACAAGTGGTGCATCTATC
-CGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGT
-GTACGCTGGAGTTCCAGGATAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCA
-TTCCGGTTCACCCGCGCCAGTACGAATTCTCGCGCCTGAATCTGGAATACACCGTGATGT
-CCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACACGTCGAAGGTTGGGACGATCCGC
-GTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGT
-TCTGCAAACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAAT
-CCTGCATTCGCGAAGATCTGAACGAAAACGCGCCGCGCGCGATGGCGGTAATCGATCCGG
-TAAAACTGGTTATCGAAAATTACCCGCAGGGTGAGAGCGAAATGGTTACCATGCCTAACC
-ATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCG
-ATCGCGCAGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAG
-AAGTGCGTCTGCGTAATGCCTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAG
-GGAATATCACCACCATCTTCTGTACCTATGATGCTGATACGCTGAGTAAAGATCCGGCTG
-ACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGCAGCACATGCGCTGCCGATTG
-AAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAATCCGGGCGCCGCGGAGGACTTCC
-TGTCTGTTATCAACCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGA
-AAGCGGCGGTAGCAGGAAAAGCTTTCCAGTTTGAACGTGAAGGCTACTTCTGCCTCGACA
-GCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGCACCGTGGGCCTGCGTGATACCT
-GGGCGAAAGCGGGCGAGTAACGCGCATAGGCGGCCTTCAAGGAGGCGCTAGGCGAATGAA
-AGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGG
-AATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCC
-GCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGAC
-GTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGG
-CGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGT
-CAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAA
-TCGTGGTTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAAT
-TCAGGCATTGATTCCGTTAGCGAAGGATATTATCGCGCGCTATAACATCAAACCGCAGAA
-TGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCC
-GTGGCGCGAGCTGGCGGCGCAGGGGATTAGCGCCTGGCCTGACGCCCAGCGTGTGGCGTT
-TTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACT
-CTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCACGCGAGCAGCAGCGGGTGAT
-TATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAAC
-GCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATAGGCGCGC
-GAGATTACGCGCGCAGTATCGCGC
->genome1_2
-CGCGCATAGCGCGCAATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAG
-GCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTC
-CCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGT
-AAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAG
-AGCCGTCAGGAAGTTGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTG
-ATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAAT
-TACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGATATGAGGCGCGGCGCTATAA
-GGCGCTCATGAGCATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTC
-TGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGA
-GACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTT
-CGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGC
-GATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCG
-GGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCA
-CAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGG
-CTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCT
-CATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCA
-TAACCAAATGGATGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGC
-CATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGA
-ACGCATTAATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAG
-CACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATAT
-TACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCG
-CAATGTCAAAGCCAAAAACATCACGCCCGGTTTCAGTAAAAATGCGGGTATTGATAACGC
-AACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAG
-TGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAA
-CTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCAT
-TCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCG
-TGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGCAATATCAACGTGAT
-GCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTACG
-TGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAA
-TGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGA
-AGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGAATTCCGCGGCATATAGCGGC
-GCGATAGCATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTC
-ATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCG
-GCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGA
-GCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGATGGGC
-AGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGT
-TTCAGCACTTCAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGA
-TTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGA
-AGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAAC
-AGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATG
-AACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAAC
-TGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCTCGCCATG
-TCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGTGATCCGGAGC
-AGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAAT
-AACGCTCAGAGGCGCGCGCGCGCTATATACGCGCAGTGTTTATTGGCATAGTTAGCCTGT
-TTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAG
-GCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCG
-TGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGG
-ACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGC
-CTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTA
-TTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACG
-AAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGA
-TTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAG
-ATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGG
-GGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTT
-TGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTC
-TGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGC
-ATAAACATGATGGGATGGCATAGCCGTCATATGGGCTCTCAGAGGAGACGCGCTAATGCG
-CAGTACGTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGAT
-TACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCT
-CGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCG
-GGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCA
-GGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGC
-GTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTA
-GATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTC
-AGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGG
-GTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGT
-CCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCG
-GGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTT
-AGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCG
-GAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGCATA
-CGCGCGCGATATATATTCGCGCAGAGGCGCGCATAGCGATGAAGTTTGTTGCGCCCGAAC
-AGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCGTTCTGGCCTGATGTGGACCTGT
-CGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGG
-TCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGC
-AGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCG
-AGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGC
-GTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGG
-CCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGTACCGC
-ACTGTACGGTGGAGCTTATCTGAACGGCTAGCGCGTAGCGGCAGTCTCGGATGAATAATC
-ATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATG
-CGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGT
-TCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCT
-ATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGG
-TTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGACGATCGCGCGCAGGAGGAGAGC
-TCTCTTCTTCTAGAGCATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCG
-CTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGAT
-GATCGTCCCTCAGCTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGT
-GCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGC
-CACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCC
-CTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATA
-TGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGC
-GCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGTATTACCGCCAGGC
-GGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCAC
-GGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACG
-GCTATGCGCGCGCTCGATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTT
-TGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAG
-CACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTT
-CTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGAT
-CATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAA
-ACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTC
-CGGATCGGCGATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCG
-CGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAAT
-GTTAATTCCGCCCACCACGGCTTTTATCCTTTACGCGCTGGCAAGCGGGGGAACATCGAT
-TGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCT
-GGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGG
-TATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGT
-CGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTA
-TACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGAT
-TTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGC
-GATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGG
-TATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGG
-CGCATTTATGGATATTGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCAATCAT
-GGCTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGAT
-TGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGT
-CAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCT
-GTTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCAT
-GTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fsa b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fsa
deleted file mode 100644
index ca5e180a..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fsa
+++ /dev/null
@@ -1,167 +0,0 @@
->genome1_1 [gcode=11] [organism=Genus species] [strain=strain]
-ATGTGTAAAAGCCGGAGGGGTTATCTTTTCCCGGCTTTTTATTATCAATTACTCATTAAC
-TCCTGTTCCGTTCTTTTGCGTTTAATCACCGGAATATCTCCGGTATTGTTCAGCGCCCCG
-GAAATGTTTTTAACCACTGTTCTGCACTCCGTTTATTAAACGCGCTCAGCGCGCGCTCAT
-ATATCGCGCGCGCGCGCGCGCATATATATATAATGAGTGAGGCTGAAGCCCGCCCGACTA
-ACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGTGGTAAACATACCACTGTCCATA
-CCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCATATCGGCCACGCGAAATCTATCTGCC
-TGAACTTTGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCA
-ACCCGGTAAAAGAAGATATCGAGTACGTTGATTCGATCAAAAACGACGTCGAGTGGTTAG
-GCTTTCACTGGTCTGGCGATATTCGCTACTCCTCCGATTACTTTGACCAACTGCACGCCT
-ATGCGGTCGAGCTAATCAATAAAGGCCTGGCCTATGTTGATGAGCTGACGCCGGAGCAGA
-TCCGTGAATACCGCGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCA
-GCGTCGAAGAGAACCTCGCGCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTA
-AAGCCTGTCTGCGCGCTAAAATCGACATGGCGTCGCCGTTTATCGTGATGCGCGATCCGG
-TGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACTGGCAACAAGTGGTGCATCTATC
-CGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGT
-GTACGCTGGAGTTCCAGGATAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCA
-TTCCGGTTCACCCGCGCCAGTACGAATTCTCGCGCCTGAATCTGGAATACACCGTGATGT
-CCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACACGTCGAAGGTTGGGACGATCCGC
-GTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGT
-TCTGCAAACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAAT
-CCTGCATTCGCGAAGATCTGAACGAAAACGCGCCGCGCGCGATGGCGGTAATCGATCCGG
-TAAAACTGGTTATCGAAAATTACCCGCAGGGTGAGAGCGAAATGGTTACCATGCCTAACC
-ATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCG
-ATCGCGCAGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAG
-AAGTGCGTCTGCGTAATGCCTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAG
-GGAATATCACCACCATCTTCTGTACCTATGATGCTGATACGCTGAGTAAAGATCCGGCTG
-ACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGCAGCACATGCGCTGCCGATTG
-AAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAATCCGGGCGCCGCGGAGGACTTCC
-TGTCTGTTATCAACCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGA
-AAGCGGCGGTAGCAGGAAAAGCTTTCCAGTTTGAACGTGAAGGCTACTTCTGCCTCGACA
-GCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGCACCGTGGGCCTGCGTGATACCT
-GGGCGAAAGCGGGCGAGTAACGCGCATAGGCGGCCTTCAAGGAGGCGCTAGGCGAATGAA
-AGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGG
-AATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCC
-GCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGAC
-GTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGG
-CGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGT
-CAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAA
-TCGTGGTTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAAT
-TCAGGCATTGATTCCGTTAGCGAAGGATATTATCGCGCGCTATAACATCAAACCGCAGAA
-TGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCC
-GTGGCGCGAGCTGGCGGCGCAGGGGATTAGCGCCTGGCCTGACGCCCAGCGTGTGGCGTT
-TTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACT
-CTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCACGCGAGCAGCAGCGGGTGAT
-TATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAAC
-GCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATAGGCGCGC
-GAGATTACGCGCGCAGTATCGCGC
->genome1_2 [gcode=11] [organism=Genus species] [strain=strain]
-CGCGCATAGCGCGCAATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAG
-GCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTC
-CCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGT
-AAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAG
-AGCCGTCAGGAAGTTGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTG
-ATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAAT
-TACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGATATGAGGCGCGGCGCTATAA
-GGCGCTCATGAGCATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTC
-TGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGA
-GACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTT
-CGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGC
-GATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCG
-GGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCA
-CAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGG
-CTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCT
-CATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCA
-TAACCAAATGGATGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGC
-CATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGA
-ACGCATTAATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAG
-CACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATAT
-TACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCG
-CAATGTCAAAGCCAAAAACATCACGCCCGGTTTCAGTAAAAATGCGGGTATTGATAACGC
-AACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAG
-TGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAA
-CTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCAT
-TCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCG
-TGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGCAATATCAACGTGAT
-GCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTACG
-TGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAA
-TGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGA
-AGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGAATTCCGCGGCATATAGCGGC
-GCGATAGCATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTC
-ATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCG
-GCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGA
-GCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGATGGGC
-AGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGT
-TTCAGCACTTCAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGA
-TTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGA
-AGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAAC
-AGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATG
-AACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAAC
-TGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCTCGCCATG
-TCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGTGATCCGGAGC
-AGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAAT
-AACGCTCAGAGGCGCGCGCGCGCTATATACGCGCAGTGTTTATTGGCATAGTTAGCCTGT
-TTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAG
-GCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCG
-TGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGG
-ACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGC
-CTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTA
-TTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACG
-AAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGA
-TTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAG
-ATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGG
-GGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTT
-TGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTC
-TGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGC
-ATAAACATGATGGGATGGCATAGCCGTCATATGGGCTCTCAGAGGAGACGCGCTAATGCG
-CAGTACGTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGAT
-TACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCT
-CGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCG
-GGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCA
-GGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGC
-GTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTA
-GATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTC
-AGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGG
-GTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGT
-CCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCG
-GGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTT
-AGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCG
-GAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGCATA
-CGCGCGCGATATATATTCGCGCAGAGGCGCGCATAGCGATGAAGTTTGTTGCGCCCGAAC
-AGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCGTTCTGGCCTGATGTGGACCTGT
-CGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGG
-TCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGC
-AGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCG
-AGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGC
-GTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGG
-CCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGTACCGC
-ACTGTACGGTGGAGCTTATCTGAACGGCTAGCGCGTAGCGGCAGTCTCGGATGAATAATC
-ATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATG
-CGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGT
-TCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCT
-ATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGG
-TTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGACGATCGCGCGCAGGAGGAGAGC
-TCTCTTCTTCTAGAGCATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCG
-CTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGAT
-GATCGTCCCTCAGCTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGT
-GCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGC
-CACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCC
-CTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATA
-TGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGC
-GCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGTATTACCGCCAGGC
-GGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCAC
-GGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACG
-GCTATGCGCGCGCTCGATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTT
-TGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAG
-CACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTT
-CTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGAT
-CATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAA
-ACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTC
-CGGATCGGCGATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCG
-CGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAAT
-GTTAATTCCGCCCACCACGGCTTTTATCCTTTACGCGCTGGCAAGCGGGGGAACATCGAT
-TGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCT
-GGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGG
-TATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGT
-CGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTA
-TACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGAT
-TTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGC
-GATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGG
-TATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGG
-CGCATTTATGGATATTGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCAATCAT
-GGCTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGAT
-TGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGT
-CAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCT
-GTTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCAT
-GTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gbk b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gbk
deleted file mode 100644
index 027b74e2..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gbk
+++ /dev/null
@@ -1,346 +0,0 @@
-LOCUS genome1_1 2784 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..2784
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 213..1880
- /gene="glnS"
- /locus_tag="GKEGNCBE_00001"
- /EC_number="6.1.1.18"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P00962"
- /codon_start=1
- /transl_table=11
- /product="Glutamine--tRNA ligase"
- /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
- AKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSD
- YFDQLHAYAVELINKGLAYVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEK
- MRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI
- SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
- LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE
- DLNENAPRAMAVIDPVKLVIENYPQGESEMVTMPNHPNKPEMGSREVPFSGEIWIDRA
- DFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPAD
- GRKVKGVIHWVSAAHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQGYGEPS
- LKAAVAGKAFQFEREGYFCLDSRYATADKLVFNRTVGLRDTWAKAGE"
- CDS 1916..2746
- /gene="amiD"
- /locus_tag="GKEGNCBE_00002"
- /EC_number="3.5.1.28"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P75820"
- /codon_start=1
- /transl_table=11
- /product="N-acetylmuramoyl-L-alanine amidase AmiD"
- /translation="MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRI
- KVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGV
- SFWRGATRLNDTSIGIELENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYNIKP
- QNVVAHADIAPQRKDDPGPRFPWRELAAQGISAWPDAQRVAFYLAGRAPYTPVDTATV
- LALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
- "
-ORIGIN
- 1 atgtgtaaaa gccggagggg ttatcttttc ccggcttttt attatcaatt actcattaac
- 61 tcctgttccg ttcttttgcg tttaatcacc ggaatatctc cggtattgtt cagcgccccg
- 121 gaaatgtttt taaccactgt tctgcactcc gtttattaaa cgcgctcagc gcgcgctcat
- 181 atatcgcgcg cgcgcgcgcg catatatata taatgagtga ggctgaagcc cgcccgacta
- 241 actttattcg tcagattatt gatgaagatc tggcgagtgg taaacatacc actgtccata
- 301 cccgttttcc gccggagccg aatggctatc tgcatatcgg ccacgcgaaa tctatctgcc
- 361 tgaactttgg catcgcgcaa gattatcagg gccagtgcaa cctgcgtttc gatgacacca
- 421 acccggtaaa agaagatatc gagtacgttg attcgatcaa aaacgacgtc gagtggttag
- 481 gctttcactg gtctggcgat attcgctact cctccgatta ctttgaccaa ctgcacgcct
- 541 atgcggtcga gctaatcaat aaaggcctgg cctatgttga tgagctgacg ccggagcaga
- 601 tccgtgaata ccgcggtacg ctgaccgcgc cgggtaaaaa cagcccgttc cgcgatcgca
- 661 gcgtcgaaga gaacctcgcg ctatttgaaa aaatgcgtac cggcggtttt gaagagggta
- 721 aagcctgtct gcgcgctaaa atcgacatgg cgtcgccgtt tatcgtgatg cgcgatccgg
- 781 tgctgtatcg cattaaattc gccgagcatc atcagactgg caacaagtgg tgcatctatc
- 841 cgatgtacga ctttactcac tgcatcagcg atgcgctgga aggcattact cattctctgt
- 901 gtacgctgga gttccaggat aaccgtcgtc tgtacgactg ggtgctggac aacatcacca
- 961 ttccggttca cccgcgccag tacgaattct cgcgcctgaa tctggaatac accgtgatgt
- 1021 ccaagcgtaa gctgaacctg ctggtgaccg acaaacacgt cgaaggttgg gacgatccgc
- 1081 gtatgccgac tatttccggt ctgcgccgtc gcggctatac cgcggcttct attcgtgagt
- 1141 tctgcaaacg catcggcgtc accaagcagg acaacactat tgagatggcg tcgctggaat
- 1201 cctgcattcg cgaagatctg aacgaaaacg cgccgcgcgc gatggcggta atcgatccgg
- 1261 taaaactggt tatcgaaaat tacccgcagg gtgagagcga aatggttacc atgcctaacc
- 1321 atccgaataa accggagatg ggcagccgtg aagtgccgtt tagcggtgag atctggatcg
- 1381 atcgcgcaga tttccgcgaa gaagcgaaca aacagtacaa acgtctggtg atgggcaaag
- 1441 aagtgcgtct gcgtaatgcc tacgtcatta aagcggagcg cgtagagaag gatgccgaag
- 1501 ggaatatcac caccatcttc tgtacctatg atgctgatac gctgagtaaa gatccggctg
- 1561 acgggcgtaa agtgaaaggc gtaatccact gggttagcgc agcacatgcg ctgccgattg
- 1621 aaattcgtct ctacgaccgt ctgttcagcg tgccgaatcc gggcgccgcg gaggacttcc
- 1681 tgtctgttat caaccccgaa tcattagtga ttaagcaggg gtatggcgag ccgtcgctga
- 1741 aagcggcggt agcaggaaaa gctttccagt ttgaacgtga aggctacttc tgcctcgaca
- 1801 gccgctatgc aacggccgat aagctggtct ttaaccgcac cgtgggcctg cgtgatacct
- 1861 gggcgaaagc gggcgagtaa cgcgcatagg cggccttcaa ggaggcgcta ggcgaatgaa
- 1921 agcgctactg tggctggtgg gtctcgcgtt gctgttaaca ggctgcgcga gcgaaaaagg
- 1981 aattatcgat aaagagggat atcagcttga tacccgacat cgggcgcagg cggcctatcc
- 2041 gcgcattaaa gtcctggtga ttcactatac ggcggaaaac tttgacgttt cgctggcgac
- 2101 gttaacgggt cgcaacgtca gttcgcatta cctgattccc gcaaccccgc cattatatgg
- 2161 cggtaaaccg cgcatctggc aactggtgcc ggaacaggat caggcctggc atgcgggcgt
- 2221 cagtttctgg cgaggcgcca cgcgtctcaa tgatacgtct attggcattg agctggaaaa
- 2281 tcgtggttgg cgaatgtccg gcggggtgaa atctttcgcg ccgtttgaat ccgcgcaaat
- 2341 tcaggcattg attccgttag cgaaggatat tatcgcgcgc tataacatca aaccgcagaa
- 2401 tgtggtggcc catgcggata tcgcgccgca gcgtaaagac gatcccggcc cgcgcttccc
- 2461 gtggcgcgag ctggcggcgc aggggattag cgcctggcct gacgcccagc gtgtggcgtt
- 2521 ttatctggct ggacgcgcgc cgtatacgcc agtcgatacc gcaacggtgc ttgcgttact
- 2581 ctcgcgctat ggctatgaag tcaaagccga tatgacggca cgcgagcagc agcgggtgat
- 2641 tatggcgttc cagatgcact tccgtccggc gcaatggaac ggtatcgcag atgccgaaac
- 2701 gcaggcgatt gccgaagcat tactggagaa gtacggccag gattaacgcg ataggcgcgc
- 2761 gagattacgc gcgcagtatc gcgc
-//
-LOCUS genome1_2 7024 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..7024
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 16..396
- /gene="hpcD"
- /locus_tag="GKEGNCBE_00003"
- /EC_number="5.3.3.10"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:Q05354"
- /codon_start=1
- /transl_table=11
- /product="5-carboxymethyl-2-hydroxymuconate
- Delta-isomerase"
- /translation="MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRA
- HWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLA
- LSFEIAELHPTLNYKQNNVHALFK"
- CDS 428..1837
- /locus_tag="GKEGNCBE_00004"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MSMPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKD
- YPADDGIASFKQAFADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFI
- LQDGCQVVGEQGGSLHNVTLDVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLII
- DDITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIE
- RINCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFV
- IRNVKAKNITPGFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLS
- IPQNFKLNAIRLDNRQVAYKLRGIQISSGNTPSFVAITNVRMTRATLELHNQPQHLFL
- RNINVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDIDRI
- NHQTVNVEAVNFSLPKRGG"
- CDS 1869..2642
- /gene="hisP"
- /locus_tag="GKEGNCBE_00005"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P02915"
- /codon_start=1
- /transl_table=11
- /product="Histidine transport ATP-binding protein HisP"
- /translation="MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGK
- STFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
- LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR
- VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
- SSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK"
- CDS 2709..3443
- /gene="trmD_1"
- /locus_tag="GKEGNCBE_00006"
- /EC_number="2.1.1.228"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P0A873"
- /codon_start=1
- /transl_table=11
- /product="tRNA (guanine-N(1)-)-methyltransferase"
- /translation="MFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYG
- GGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCG
- RYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSF
- ADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLAL
- TEEQARLLAEFKTEHAQQQHKHDGMA"
- CDS 3427..4254
- /gene="trmD_2"
- /locus_tag="GKEGNCBE_00007"
- /EC_number="2.1.1.228"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P0A873"
- /codon_start=1
- /transl_table=11
- /product="tRNA (guanine-N(1)-)-methyltransferase"
- /translation="MMGWHSRHMGSQRRRANAQYVFIGIVSLFPEMFRAITDYGVTGR
- AVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGA
- KVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSG
- GELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLS
- GNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
- CDS 4299..4763
- /locus_tag="GKEGNCBE_00008"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MKFVAPEQAPEQAEVIKNTPFWPDVDLSEFRSVMRTDGTVTQPR
- LKQVVLTAISEVNAELYDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWAR
- AVLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDVPHCTVELI"
- CDS 4818..5078
- /locus_tag="GKEGNCBE_00009"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLS
- AWEAGILTRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG"
- CDS 5117..5698
- /locus_tag="GKEGNCBE_00010"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYP
- ADAAELLESLVLEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
- LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLYYRQAVAYYA
- SCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC"
- CDS 5717..7024
- /gene="dctM"
- /locus_tag="GKEGNCBE_00011"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:O07838"
- /codon_start=1
- /transl_table=11
- /product="C4-dicarboxylate TRAP transporter large permease
- protein DctM"
- /translation="MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFD
- ISMFATAQKMFSSLDSFALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSY
- TNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPT
- TAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMAL
- KVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSIL
- LQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLII
- GAFMDIGPAILIFTPILLPIMAKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASV
- GKVKVEEVIKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM"
-ORIGIN
- 1 cgcgcatagc gcgcaatgcc gcactttatt gctgaatgta ctgaaaatat tcgcgagcag
- 61 gctgatttac ccggcctgtt cagcaaggta aacgaggcgc tggccgccag cgggattttc
- 121 cccatcggcg gtatccgcag tcgcgcccac tggctggata cctggcagat ggctgacggt
- 181 aagcatgatt acgcgtttgt gcatatgacg ctgaaaatcg gcgccgggcg cagcctggag
- 241 agccgtcagg aagttggcga aatgctgttt gggctgatta aagcccactt cgccgacctg
- 301 atggagaacc gctatctggc gctgtcgttt gagattgccg agctacatcc gacgctcaat
- 361 tacaaacaaa acaacgtaca cgcgttattt aaatagccga tatgaggcgc ggcgctataa
- 421 ggcgctcatg agcatgcccg cgactaaatt ctcccgacgt accctcctga cggcaggttc
- 481 tgcgcttgct gttcttcctt ttctgcgcgc cttgccggta caggcgcgtg aacctcgcga
- 541 gaccgtcgat attaaggatt atccggcgga tgacggtatc gcctcgttca aacaggcctt
- 601 cgccgacgga cagaccgtgg tcgtaccgcc aggatgggtg tgtgaaaata tcaatgcggc
- 661 gataacgatt ccggcgggaa aaacgctgcg ggtacagggc gcggtgcgtg ggaatggccg
- 721 gggacggttt attttgcagg acgggtgtca ggtggtgggg gagcagggcg gcagtctgca
- 781 caatgtgacg ctggatgttc gcgggtcgga ctgtgtgatt aaaggcgtgg cgatgagcgg
- 841 ctttggcccc gtcgcgcaaa ttttcatcgg tggtaaggaa ccgcaggtga tgcgtaatct
- 901 cattatcgat gacatcaccg ttacccacgc caactacgcc attctccgcc agggatttca
- 961 taaccaaatg gatggcgcgc ggattacgca tagccgcttt agcgatttac agggggacgc
- 1021 cattgagtgg aatgtcgcga ttcacgaccg cgacatcctg atttccgatc atgtcatcga
- 1081 acgcattaat tgtaccaatg gcaaaatcaa ctgggggatc ggcatcgggc tggcgggtag
- 1141 cacctatgac aacagttatc ctgaagacca ggcagtaaaa aactttgtgg tggccaatat
- 1201 taccggatct gattgccgac agcttgtgca cgtagaaaat ggcaaacatt tcgtcattcg
- 1261 caatgtcaaa gccaaaaaca tcacgcccgg tttcagtaaa aatgcgggta ttgataacgc
- 1321 aacgatcgca atttatggct gtgataattt cgtcattgat aatattgata tgacgaatag
- 1381 tgccgggatg ctcatcggct atggcgtcgt taaaggaaaa tacctgtcaa ttccgcaaaa
- 1441 ctttaaatta aacgctattc ggttggataa tcgccaggtt gcttataaat tacgcggcat
- 1501 tcaaatttcc tccggcaaca ccccctcttt tgtcgccatc accaatgtac ggatgacgcg
- 1561 tgctacgctg gaactgcata atcaaccgca gcacctcttt ctgcgcaata tcaacgtgat
- 1621 gcaaacttca gcgattggcc cggcgttaaa aatgcatttc gatttgcgta aagatgtacg
- 1681 tggtcaattt atggcccgcc aggacacgct gctttccctc gctaatgttc atgccatcaa
- 1741 tgaaaacggg cagagttccg tggatatcga caggattaat caccaaaccg tgaatgtcga
- 1801 agcagtgaat ttttcgctgc cgaagcgggg agggtaacga attccgcggc atatagcggc
- 1861 gcgatagcat gtcagaaaat aaattacacg ttatcgattt gcacaaacgc tacggcggtc
- 1921 atgaagtgct gaaaggggta tcgctgcagg cccgcgccgg agatgtgatt agcatcatcg
- 1981 gctcgtccgg ctccggtaaa agcacttttt tgcgctgtat taacttcctc gaaaaaccga
- 2041 gcgaaggcgc gattatcgtg aacggtcaga acattaatct ggtgcgcgac aaagatgggc
- 2101 agctcaaagt ggcggataaa aatcagctac gcttgttgcg tacccgcctg acgatggtgt
- 2161 ttcagcactt caacctctgg agccacatga cggtgctgga aaatgtgatg gaagcgccga
- 2221 ttcaggtact gggattaagc aagcacgacg cgcgcgagcg ggcgttgaaa tatctggcga
- 2281 aggtggggat tgatgagcgc gctcagggca aatatcccgt ccatctctcc ggcggccaac
- 2341 agcagcgcgt ttctattgcg cgcgcgctgg cgatggaacc tgacgtttta ctgttcgatg
- 2401 aacccacatc ggcgctcgat cctgaactgg tcggcgaagt gttgcgcatc atgcaacaac
- 2461 tggcggaaga aggcaaaacg atggtggtgg tcacgcatga aatgggcttc gctcgccatg
- 2521 tctcttcgca cgttattttt ctgcatcagg ggaaaattga agaagagggt gatccggagc
- 2581 aggtgttcgg caatccgcaa agcccgcgtt tacagcaatt cctgaaaggc tcgctgaaat
- 2641 aacgctcaga ggcgcgcgcg cgctatatac gcgcagtgtt tattggcata gttagcctgt
- 2701 ttcctgaaat gttccgcgca attaccgatt acggggtaac tggccgggca gtaaaaaaag
- 2761 gcctgctgaa catccaaagc tggagtcctc gcgacttcgc gcatgaccgg caccgtaccg
- 2821 tggacgaccg tccttacggc ggcggaccgg ggatgttaat gatggtgcaa cccttgcggg
- 2881 acgccattca cgcagcaaaa gccgcggcag gtgaaggcgc taaagtgatt tatctgtcgc
- 2941 ctcagggacg caagcttgat caagcgggcg ttagcgagct ggccacgaat cagaagctta
- 3001 ttctggtgtg tggtcgctac gaaggcgtag atgagcgcgt aattcagacc gaaattgacg
- 3061 aagaatggtc aattggcgat tacgttctca gcggtggcga actaccggca atgacgctga
- 3121 ttgactccgt cgcccggttt ataccggggg ttctggggca tgaggcatca gcaatcgaag
- 3181 attcgtttgc tgatgggttg ctggattgtc cgcactatac gcgccctgaa gtgttagagg
- 3241 ggatggaagt accgccagta ttgctgtcgg gaaaccatgc tgagatacgt cgctggcgtt
- 3301 tgaaacagtc gctgggccga acctggctta gaagacctga acttctggaa aacctggctc
- 3361 tgactgaaga gcaagcaagg ttgctggcgg agttcaaaac agaacacgca caacagcagc
- 3421 ataaacatga tgggatggca tagccgtcat atgggctctc agaggagacg cgctaatgcg
- 3481 cagtacgtgt ttattggcat agttagcctg tttcctgaaa tgttccgcgc aattaccgat
- 3541 tacggggtaa ctggccgggc agtaaaaaaa ggcctgctga acatccaaag ctggagtcct
- 3601 cgcgacttcg cgcatgaccg gcaccgtacc gtggacgacc gtccttacgg cggcggaccg
- 3661 gggatgttaa tgatggtgca acccttgcgg gacgccattc acgcagcaaa agccgcggca
- 3721 ggtgaaggcg ctaaagtgat ttatctgtcg cctcagggac gcaagcttga tcaagcgggc
- 3781 gttagcgagc tggccacgaa tcagaagctt attctggtgt gtggtcgcta cgaaggcgta
- 3841 gatgagcgcg taattcagac cgaaattgac gaagaatggt caattggcga ttacgttctc
- 3901 agcggtggcg aactaccggc aatgacgctg attgactccg tcgcccggtt tataccgggg
- 3961 gttctggggc atgaggcatc agcaatcgaa gattcgtttg ctgatgggtt gctggattgt
- 4021 ccgcactata cgcgccctga agtgttagag gggatggaag taccgccagt attgctgtcg
- 4081 ggaaaccatg ctgagatacg tcgctggcgt ttgaaacagt cgctgggccg aacctggctt
- 4141 agaagacctg aacttctgga aaacctggct ctgactgaag agcaagcaag gttgctggcg
- 4201 gagttcaaaa cagaacacgc acaacagcag cataaacatg atgggatggc atagcgcata
- 4261 cgcgcgcgat atatattcgc gcagaggcgc gcatagcgat gaagtttgtt gcgcccgaac
- 4321 aggcaccgga acaggcggag gtcatcaaaa atacgccgtt ctggcctgat gtggacctgt
- 4381 cggaatttcg cagtgtgatg cgcactgacg gcacggtgac gcagccgcgt ttaaagcagg
- 4441 tcgtgctgac ggcgatctct gaggttaacg ctgagctgta cgacttccgc aaccgtcagc
- 4501 agatgctggg ctggcggaca cttgctgagg ttcccgcaga aatgctggac ggtaaaagcg
- 4561 agcgtatccg gcactaccac aacgctgttt tttgctgggc gcgcgctgtg cttaatgagc
- 4621 gttatcagga ctatgacgcc acggcgtcag gcgtgaagcg aggggaggag ctggcggagg
- 4681 ccagcggcga tctgtggcgt gatgcccgct gggccatcag ccgggtgcag gatgtaccgc
- 4741 actgtacggt ggagcttatc tgaacggcta gcgcgtagcg gcagtctcgg atgaataatc
- 4801 attttgggaa agggttaatg gccgggttgc acgcgccata tgcatatagc gcgcatcatg
- 4861 cggtgaattt ctgttctgag tataaacgtg gctttgtatt gggttttaca caccgtatgt
- 4921 tcgaaaagac cggcgatcgt caacttagcg cgtgggaggc tggaattctg acgcgtcgct
- 4981 atggtctgga taaagaaatg gtgatggatt tctttaaaga gaatcattcc gggatggcgg
- 5041 ttcgcttctt tatggccggt tatcgactcg aaggttgacg atcgcgcgca ggaggagagc
- 5101 tctcttcttc tagagcatgt ctacgcttct ctatttgcac ggattcaaca gttcccctcg
- 5161 ctcggcaaaa gcgtgccagc taaaaaactg gctggcggag cgtcatccgc atgttgagat
- 5221 gatcgtccct cagctgccgc cgtatcctgc cgatgcggcg gagttgctgg aatctctcgt
- 5281 gcttgagcat ggcggtgcgc cattagggct ggtaggatcg tcgctgggtg gttattacgc
- 5341 cacctggctg tcgcaatgtt ttatgctgcc ggctgtggtg gtgaatcccg ccgtgcggcc
- 5401 ctttgaatta ctgaccgact atctcggtca gaacgagaac ccctacaccg ggcagcaata
- 5461 tgtgctagag tctcgccata tttatgatct taaagtcatg cagattgacc cgctggaagc
- 5521 gccggacctg atctggctac tgcaacagac gggcgatgaa gtgctgtatt accgccaggc
- 5581 ggtggcatat tacgcctcct gccgtcagac agtgaccgag ggtggtaatc acgcattcac
- 5641 gggcttcgaa gattatttca accagattgt cgattttctt ggactgcaca gttgctgacg
- 5701 gctatgcgcg cgctcgatga ttgaccctat ttttgcgtcc tgtacgctaa ttgccgtctt
- 5761 tgttgtttta ctggccatgg gcgcgcctat cgggatctgc atcgttatcg cctctttcag
- 5821 caccatgatg ctggtactgc ctttcgatat ttcgatgttc gccaccgcgc aaaaaatgtt
- 5881 ctccagcctg gacagttttg ccttgctggc cgtgccgttc ttcgttttgt ccggggtgat
- 5941 catgaatagc gggggaattg ccgcccggct ggtcaatttt gccaaactgt ttactggcaa
- 6001 actgcccggc tcgctctctt ataccaacat cgtcggcaat atgatgttcg gtgcaatttc
- 6061 cggatcggcg attgccgcct caacctccat cggcggcgtg atggtgccga tgagcgcgcg
- 6121 cgaaggttac gatcgcggct ttgcggccgc ggtgaatatc gcctccgcgc cgacgggaat
- 6181 gttaattccg cccaccacgg cttttatcct ttacgcgctg gcaagcgggg gaacatcgat
- 6241 tgccgctctg ttcgccggcg gtctggtcgc gggagtgctg tggggcgttg gctgtatgct
- 6301 ggtcacgctg gtggtcgcta agcgtcgaaa ttatcgggtt ttcttcaccg tccaaaaagg
- 6361 tatggcgcta aaagttgccg ttgaggccat tcccagcctg ctgctgatcg tgattattgt
- 6421 cggcggcatt gtgcagggga ttttcaccgc cattgaagcc tccgcgattg ccgtggtgta
- 6481 tacgttattg ctgacgatgg tgttttaccg cacgctgaaa attaaggatt tgccttcgat
- 6541 tttgctccag acagtggtaa tgaccggggt catcatgttc ctgctggcaa cctcttcggc
- 6601 gatgtccttc tcgatgtcga tcaccaatat tcctgcggcg ctgagcgata tgatcctcgg
- 6661 tatttccgcc aataaactgg ttatcctgtt agtcattacc gtctttttgt tgattatcgg
- 6721 cgcatttatg gatattggtc cggccattct gatttttacc ccgattctgc tgccaatcat
- 6781 ggctaaactg ggcgtcgatc cggtgcattt cggcattatc atgatctata acctggcgat
- 6841 tggcaccatt acgccgccag ttggcagtgg tttatatgtc ggggcgagcg tcggtaaggt
- 6901 caaagttgag gaagtgatta aaccgttgct gcctttttac ggcgcgatta tcggcgttct
- 6961 gttattaatt acctacattc cggaaatcac actgttctta ccccgtctac tgggcatcat
- 7021 gtaa
-//
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gff b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gff
deleted file mode 100644
index 71be830b..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gff
+++ /dev/null
@@ -1,182 +0,0 @@
-##gff-version 3
-##sequence-region genome1_1 1 2784
-##sequence-region genome1_2 1 7024
-genome1_1 Prodigal:2.6 CDS 213 1880 . + 0 ID=GKEGNCBE_00001;eC_number=6.1.1.18;Name=glnS;dbxref=COG:COG0008;gene=glnS;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P00962;locus_tag=GKEGNCBE_00001;product=Glutamine--tRNA ligase
-genome1_1 Prodigal:2.6 CDS 1916 2746 . + 0 ID=GKEGNCBE_00002;eC_number=3.5.1.28;Name=amiD;dbxref=COG:COG3023;gene=amiD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P75820;locus_tag=GKEGNCBE_00002;product=N-acetylmuramoyl-L-alanine amidase AmiD
-genome1_2 Prodigal:2.6 CDS 16 396 . + 0 ID=GKEGNCBE_00003;eC_number=5.3.3.10;Name=hpcD;gene=hpcD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:Q05354;locus_tag=GKEGNCBE_00003;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-genome1_2 Prodigal:2.6 CDS 428 1837 . + 0 ID=GKEGNCBE_00004;inference=ab initio prediction:Prodigal:2.6;locus_tag=GKEGNCBE_00004;product=hypothetical protein
-genome1_2 Prodigal:2.6 CDS 1869 2642 . + 0 ID=GKEGNCBE_00005;Name=hisP;dbxref=COG:COG4598;gene=hisP;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P02915;locus_tag=GKEGNCBE_00005;product=Histidine transport ATP-binding protein HisP
-genome1_2 Prodigal:2.6 CDS 2709 3443 . + 0 ID=GKEGNCBE_00006;eC_number=2.1.1.228;Name=trmD_1;dbxref=COG:COG0336;gene=trmD_1;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P0A873;locus_tag=GKEGNCBE_00006;product=tRNA (guanine-N(1)-)-methyltransferase
-genome1_2 Prodigal:2.6 CDS 3427 4254 . + 0 ID=GKEGNCBE_00007;eC_number=2.1.1.228;Name=trmD_2;dbxref=COG:COG0336;gene=trmD_2;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P0A873;locus_tag=GKEGNCBE_00007;product=tRNA (guanine-N(1)-)-methyltransferase
-genome1_2 Prodigal:2.6 CDS 4299 4763 . + 0 ID=GKEGNCBE_00008;inference=ab initio prediction:Prodigal:2.6;locus_tag=GKEGNCBE_00008;product=hypothetical protein
-genome1_2 Prodigal:2.6 CDS 4818 5078 . + 0 ID=GKEGNCBE_00009;inference=ab initio prediction:Prodigal:2.6;locus_tag=GKEGNCBE_00009;product=hypothetical protein
-genome1_2 Prodigal:2.6 CDS 5117 5698 . + 0 ID=GKEGNCBE_00010;inference=ab initio prediction:Prodigal:2.6;locus_tag=GKEGNCBE_00010;product=hypothetical protein
-genome1_2 Prodigal:2.6 CDS 5717 7024 . + 0 ID=GKEGNCBE_00011;Name=dctM;dbxref=COG:COG1593;gene=dctM;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:O07838;locus_tag=GKEGNCBE_00011;product=C4-dicarboxylate TRAP transporter large permease protein DctM
-##FASTA
->genome1_1
-ATGTGTAAAAGCCGGAGGGGTTATCTTTTCCCGGCTTTTTATTATCAATTACTCATTAAC
-TCCTGTTCCGTTCTTTTGCGTTTAATCACCGGAATATCTCCGGTATTGTTCAGCGCCCCG
-GAAATGTTTTTAACCACTGTTCTGCACTCCGTTTATTAAACGCGCTCAGCGCGCGCTCAT
-ATATCGCGCGCGCGCGCGCGCATATATATATAATGAGTGAGGCTGAAGCCCGCCCGACTA
-ACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGTGGTAAACATACCACTGTCCATA
-CCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCATATCGGCCACGCGAAATCTATCTGCC
-TGAACTTTGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCA
-ACCCGGTAAAAGAAGATATCGAGTACGTTGATTCGATCAAAAACGACGTCGAGTGGTTAG
-GCTTTCACTGGTCTGGCGATATTCGCTACTCCTCCGATTACTTTGACCAACTGCACGCCT
-ATGCGGTCGAGCTAATCAATAAAGGCCTGGCCTATGTTGATGAGCTGACGCCGGAGCAGA
-TCCGTGAATACCGCGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCA
-GCGTCGAAGAGAACCTCGCGCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTA
-AAGCCTGTCTGCGCGCTAAAATCGACATGGCGTCGCCGTTTATCGTGATGCGCGATCCGG
-TGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACTGGCAACAAGTGGTGCATCTATC
-CGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGT
-GTACGCTGGAGTTCCAGGATAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCA
-TTCCGGTTCACCCGCGCCAGTACGAATTCTCGCGCCTGAATCTGGAATACACCGTGATGT
-CCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACACGTCGAAGGTTGGGACGATCCGC
-GTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGT
-TCTGCAAACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAAT
-CCTGCATTCGCGAAGATCTGAACGAAAACGCGCCGCGCGCGATGGCGGTAATCGATCCGG
-TAAAACTGGTTATCGAAAATTACCCGCAGGGTGAGAGCGAAATGGTTACCATGCCTAACC
-ATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCG
-ATCGCGCAGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAG
-AAGTGCGTCTGCGTAATGCCTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAG
-GGAATATCACCACCATCTTCTGTACCTATGATGCTGATACGCTGAGTAAAGATCCGGCTG
-ACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGCAGCACATGCGCTGCCGATTG
-AAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAATCCGGGCGCCGCGGAGGACTTCC
-TGTCTGTTATCAACCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGA
-AAGCGGCGGTAGCAGGAAAAGCTTTCCAGTTTGAACGTGAAGGCTACTTCTGCCTCGACA
-GCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGCACCGTGGGCCTGCGTGATACCT
-GGGCGAAAGCGGGCGAGTAACGCGCATAGGCGGCCTTCAAGGAGGCGCTAGGCGAATGAA
-AGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGG
-AATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCC
-GCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGAC
-GTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGG
-CGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGT
-CAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAA
-TCGTGGTTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAAT
-TCAGGCATTGATTCCGTTAGCGAAGGATATTATCGCGCGCTATAACATCAAACCGCAGAA
-TGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCC
-GTGGCGCGAGCTGGCGGCGCAGGGGATTAGCGCCTGGCCTGACGCCCAGCGTGTGGCGTT
-TTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACT
-CTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCACGCGAGCAGCAGCGGGTGAT
-TATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAAC
-GCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATAGGCGCGC
-GAGATTACGCGCGCAGTATCGCGC
->genome1_2
-CGCGCATAGCGCGCAATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAG
-GCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTC
-CCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGT
-AAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAG
-AGCCGTCAGGAAGTTGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTG
-ATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAAT
-TACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGATATGAGGCGCGGCGCTATAA
-GGCGCTCATGAGCATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTC
-TGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGA
-GACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTT
-CGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGC
-GATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCG
-GGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCA
-CAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGG
-CTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCT
-CATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCA
-TAACCAAATGGATGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGC
-CATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGA
-ACGCATTAATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAG
-CACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATAT
-TACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCG
-CAATGTCAAAGCCAAAAACATCACGCCCGGTTTCAGTAAAAATGCGGGTATTGATAACGC
-AACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAG
-TGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAA
-CTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCAT
-TCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCG
-TGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGCAATATCAACGTGAT
-GCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTACG
-TGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAA
-TGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGA
-AGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGAATTCCGCGGCATATAGCGGC
-GCGATAGCATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTC
-ATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCG
-GCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGA
-GCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGATGGGC
-AGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGT
-TTCAGCACTTCAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGA
-TTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGA
-AGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAAC
-AGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATG
-AACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAAC
-TGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCTCGCCATG
-TCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGTGATCCGGAGC
-AGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAAT
-AACGCTCAGAGGCGCGCGCGCGCTATATACGCGCAGTGTTTATTGGCATAGTTAGCCTGT
-TTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAG
-GCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCG
-TGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGG
-ACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGC
-CTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTA
-TTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACG
-AAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGA
-TTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAG
-ATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGG
-GGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTT
-TGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTC
-TGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGC
-ATAAACATGATGGGATGGCATAGCCGTCATATGGGCTCTCAGAGGAGACGCGCTAATGCG
-CAGTACGTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGAT
-TACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCT
-CGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCG
-GGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCA
-GGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGC
-GTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTA
-GATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTC
-AGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGG
-GTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGT
-CCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCG
-GGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTT
-AGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCG
-GAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGCATA
-CGCGCGCGATATATATTCGCGCAGAGGCGCGCATAGCGATGAAGTTTGTTGCGCCCGAAC
-AGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCGTTCTGGCCTGATGTGGACCTGT
-CGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGG
-TCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGC
-AGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCG
-AGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGC
-GTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGG
-CCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGTACCGC
-ACTGTACGGTGGAGCTTATCTGAACGGCTAGCGCGTAGCGGCAGTCTCGGATGAATAATC
-ATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATG
-CGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGT
-TCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCT
-ATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGG
-TTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGACGATCGCGCGCAGGAGGAGAGC
-TCTCTTCTTCTAGAGCATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCG
-CTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGAT
-GATCGTCCCTCAGCTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGT
-GCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGC
-CACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCC
-CTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATA
-TGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGC
-GCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGTATTACCGCCAGGC
-GGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCAC
-GGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACG
-GCTATGCGCGCGCTCGATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTT
-TGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAG
-CACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTT
-CTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGAT
-CATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAA
-ACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTC
-CGGATCGGCGATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCG
-CGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAAT
-GTTAATTCCGCCCACCACGGCTTTTATCCTTTACGCGCTGGCAAGCGGGGGAACATCGAT
-TGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCT
-GGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGG
-TATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGT
-CGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTA
-TACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGAT
-TTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGC
-GATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGG
-TATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGG
-CGCATTTATGGATATTGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCAATCAT
-GGCTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGAT
-TGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGT
-CAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCT
-GTTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCAT
-GTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.log b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.log
deleted file mode 100644
index 6aa806da..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.log
+++ /dev/null
@@ -1,121 +0,0 @@
-[13:18:42] This is prokka 1.14-dev
-[13:18:42] Written by Torsten Seemann <torsten.seemann@gmail.com>
-[13:18:42] Homepage is https://github.com/tseemann/prokka
-[13:18:42] Local time is Tue Feb 12 13:18:42 2019
-[13:18:42] You are aperrin
-[13:18:42] Operating system is darwin
-[13:18:42] You have BioPerl 1.006924
-[13:18:42] System has 8 cores.
-[13:18:42] Will use maximum of 1 cores.
-[13:18:42] Annotating as >>> Bacteria <<<
-[13:18:42] Generating locus_tag from 'Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna' contents.
-[13:18:42] Setting --locustag GKEGNCBE from MD5 04e07cbef9b8a6b8d550f0d6ed3a8746
-[13:18:42] Creating new output folder: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes
-[13:18:42] Running: mkdir -p Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes
-[13:18:42] Using filename prefix: EXAM.0219.00001.XXX
-[13:18:42] Setting HMMER_NCPU=1
-[13:18:42] Writing log to: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.log
-[13:18:42] Command: /usr/local/bin/prokka --outdir Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes --cpus 1 --prefix EXAM.0219.00001 Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
-[13:18:42] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin
-[13:18:42] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common
-[13:18:42] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin
-[13:18:42] Looking for 'aragorn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/aragorn
-[13:18:42] Determined aragorn version is 1.2
-[13:18:42] Looking for 'barrnap' - found /usr/local/bin/barrnap
-[13:18:42] Determined barrnap version is 0.8
-[13:18:42] Looking for 'blastp' - found /Users/aperrin/Softwares/bin/blastp
-[13:18:42] Determined blastp version is 2.3
-[13:18:42] Looking for 'cmpress' - found /usr/local/bin/cmpress
-[13:18:42] Determined cmpress version is 1.1
-[13:18:42] Looking for 'cmscan' - found /usr/local/bin/cmscan
-[13:18:42] Determined cmscan version is 1.1
-[13:18:42] Looking for 'egrep' - found /usr/bin/egrep
-[13:18:42] Looking for 'find' - found /usr/bin/find
-[13:18:42] Looking for 'grep' - found /usr/bin/grep
-[13:18:42] Looking for 'hmmpress' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/hmmpress
-[13:18:42] Determined hmmpress version is 3.1
-[13:18:42] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
-[13:18:42] Determined hmmscan version is 3.1
-[13:18:42] Looking for 'java' - found /usr/bin/java
-[13:18:42] Looking for 'less' - found /usr/bin/less
-[13:18:42] Looking for 'makeblastdb' - found /Users/aperrin/Softwares/bin/makeblastdb
-[13:18:42] Determined makeblastdb version is 2.3
-[13:18:42] Looking for 'minced' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common/minced
-[13:18:42] Determined minced version is 2.0
-[13:18:42] Looking for 'parallel' - found /usr/local/bin/parallel
-[13:18:42] Determined parallel version is 20181022
-[13:18:42] Looking for 'prodigal' - found /usr/local/bin/prodigal
-[13:18:42] Determined prodigal version is 2.6
-[13:18:42] Looking for 'prokka-genbank_to_fasta_db' - found /Users/aperrin/Softwares/src/prokka/bin/prokka-genbank_to_fasta_db
-[13:18:42] Looking for 'sed' - found /usr/bin/sed
-[13:18:42] Looking for 'tbl2asn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/tbl2asn
-[13:18:42] Determined tbl2asn version is 25.6
-[13:18:42] Using genetic code table 11.
-[13:18:42] Loading and checking input file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna
-[13:18:42] Wrote 2 contigs totalling 9808 bp.
-[13:18:42] Predicting tRNAs and tmRNAs
-[13:18:42] Running: aragorn -l -gc11 -w Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.fna
-[13:18:42] Found 0 tRNAs
-[13:18:42] Predicting Ribosomal RNAs
-[13:18:42] Running Barrnap with 1 threads
-[13:18:42] Found 0 rRNAs
-[13:18:42] Skipping ncRNA search, enable with --rfam if desired.
-[13:18:42] Total of 0 tRNA + rRNA features
-[13:18:42] Searching for CRISPR repeats
-[13:18:43] Found 0 CRISPRs
-[13:18:43] Predicting coding sequences
-[13:18:43] Contigs total 9808 bp, so using meta mode
-[13:18:43] Running: prodigal -i Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.fna -c -m -g 11 -p meta -f sco -q
-[13:18:43] Found 11 CDS
-[13:18:43] Connecting features back to sequences
-[13:18:43] Not using genus-specific database. Try --usegenus to enable it.
-[13:18:43] Annotating CDS, please be patient.
-[13:18:43] Will use 1 CPUs for similarity searching.
-[13:18:43] There are still 11 unannotated CDS left (started with 11)
-[13:18:43] Will use blast to search against /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot with 1 CPUs
-[13:18:43] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/sprot\.faa | parallel --gnu --plain -j 1 --block 1558 --recstart '>' --pipe blastp -query - -db /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/sprot\.blast 2> /dev/null
-[13:18:44] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/sprot.faa
-[13:18:44] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/sprot.blast
-[13:18:44] There are still 4 unannotated CDS left (started with 11)
-[13:18:44] Will use hmmer3 to search against /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm with 1 CPUs
-[13:18:44] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 1 --block 459 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm /dev/stdin > Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.hmmer3 2> /dev/null
-[13:18:44] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/HAMAP.hmm.faa
-[13:18:44] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/HAMAP.hmm.hmmer3
-[13:18:44] Labelling remaining 4 proteins as 'hypothetical protein'
-[13:18:44] Possible /pseudo 'tRNA (guanine-N(1)-)-methyltransferase' at genome1_2 position 3427
-[13:18:44] Found 6 unique /gene codes.
-[13:18:44] Fixed 2 duplicate /gene - trmD_1 trmD_2
-[13:18:44] Fixed 1 colliding /gene names.
-[13:18:44] Adding /locus_tag identifiers
-[13:18:44] Assigned 11 locus_tags to CDS and RNA features.
-[13:18:44] Writing outputs to Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/
-[13:18:44] Generating annotation statistics file
-[13:18:44] Generating Genbank and Sequin files
-[13:18:44] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka' -Z Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.err -i Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.fsa 2> /dev/null
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/errorsummary.val
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.dr
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fixedproducts
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.ecn
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.val
-[13:18:45] Repairing broken .GBK output that tbl2asn produces...
-[13:18:45] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.gbf > Examples\/1\-res\-Annotate\/tmp_files\/genome1\.fst\-split5N\.fna\-prokkaRes\/EXAM\.0219\.00001\.gbk
-[13:18:45] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gbf
-[13:18:45] Output files:
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.txt
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tsv
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fna
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.err
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gff
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.sqn
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tbl
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.gbk
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.log
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.ffn
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.faa
-[13:18:45] Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.fsa
-[13:18:45] Annotation finished successfully.
-[13:18:45] Walltime used: 0.05 minutes
-[13:18:45] If you use this result please cite the Prokka paper:
-[13:18:45] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
-[13:18:45] Type 'prokka --citation' for more details.
-[13:18:45] Share and enjoy!
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.sqn b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.sqn
deleted file mode 100644
index 3090e431..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.sqn
+++ /dev/null
@@ -1,1042 +0,0 @@
-Seq-entry ::= set {
- class genbank ,
- seq-set {
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "genome1_1" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 2784 ,
- seq-data
- iupacna "ATGTGTAAAAGCCGGAGGGGTTATCTTTTCCCGGCTTTTTATTATCAATTACTCA
-TTAACTCCTGTTCCGTTCTTTTGCGTTTAATCACCGGAATATCTCCGGTATTGTTCAGCGCCCCGGAAATGTTTTTAA
-CCACTGTTCTGCACTCCGTTTATTAAACGCGCTCAGCGCGCGCTCATATATCGCGCGCGCGCGCGCGCATATATATAT
-AATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGTGGTAAACATAC
-CACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCATATCGGCCACGCGAAATCTATCTGCCTGAACTT
-TGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTA
-CGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCCTCCGATTACTT
-TGACCAACTGCACGCCTATGCGGTCGAGCTAATCAATAAAGGCCTGGCCTATGTTGATGAGCTGACGCCGGAGCAGAT
-CCGTGAATACCGCGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTCGAAGAGAACCTCGC
-GCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCGTCGCC
-GTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACTGGCAACAAGTGGTGCAT
-CTATCCGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTT
-CCAGGATAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTC
-GCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACACGTCGAAGGTTG
-GGACGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAA
-ACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGA
-AAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAATTACCCGCAGGGTGAGAGCGAAAT
-GGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCGA
-TCGCGCAGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGC
-CTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGATGCTGA
-TACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGCAGCACATGCGCTGCC
-GATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAATCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAA
-CCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGAAAAGCTTTCCAGTT
-TGAACGTGAAGGCTACTTCTGCCTCGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGCACCGTGGGCCT
-GCGTGATACCTGGGCGAAAGCGGGCGAGTAACGCGCATAGGCGGCCTTCAAGGAGGCGCTAGGCGAATGAAAGCGCTA
-CTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATAAAGAGGGATATCAG
-CTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTT
-GACGTTTCGCTGGCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGC
-GGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCC
-ACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGTGGTTGGCGAATGTCCGGCGGGGTGAAATCTTTC
-GCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGATATTATCGCGCGCTATAACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTG
-GCGGCGCAGGGGATTAGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCA
-GTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCACGCGAGCAG
-CAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCG
-ATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATAGGCGCGCGAGATTACGCGCGCAGTATCGCGC" } } ,
- seq {
- id {
- local
- str "genome1_1_1" } ,
- descr {
- title "Glutamine--tRNA ligase [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 555 ,
- seq-data
- ncbieaa "MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIA
-QDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSDYFDQLHAYAVELINKGLAYVDELTPEQIREY
-RGTLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPM
-YDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDP
-RMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGESEMVTM
-PNHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS
-KDPADGRKVKGVIHWVSAAHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFERE
-GYFCLDSRYATADKLVFNRTVGLRDTWAKAGE" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 3 ,
- data
- prot {
- name {
- "Glutamine--tRNA ligase" } ,
- ec {
- "6.1.1.18" } } ,
- location
- int {
- from 0 ,
- to 554 ,
- id
- local
- str "genome1_1_1" } } } } } } ,
- seq {
- id {
- local
- str "genome1_1_2" } ,
- descr {
- title "N-acetylmuramoyl-L-alanine amidase AmiD [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 276 ,
- seq-data
- ncbieaa "MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAEN
-FDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGVKS
-FAPFESAQIQALIPLAKDIIARYNIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQGISAWPDAQRVAFYLAGRAPYT
-PVDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 4 ,
- data
- prot {
- name {
- "N-acetylmuramoyl-L-alanine amidase AmiD" } ,
- ec {
- "3.5.1.28" } } ,
- location
- int {
- from 0 ,
- to 275 ,
- id
- local
- str "genome1_1_2" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 1 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_1_1" ,
- location
- int {
- from 212 ,
- to 1879 ,
- strand plus ,
- id
- local
- str "genome1_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P00962" } } ,
- xref {
- {
- data
- gene {
- locus "glnS" ,
- locus-tag "GKEGNCBE_00001" } } } } ,
- {
- id
- local
- id 2 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_1_2" ,
- location
- int {
- from 1915 ,
- to 2745 ,
- strand plus ,
- id
- local
- str "genome1_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P75820" } } ,
- xref {
- {
- data
- gene {
- locus "amiD" ,
- locus-tag "GKEGNCBE_00002" } } } } } } } } ,
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "genome1_2" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 7024 ,
- seq-data
- iupacna "CGCGCATAGCGCGCAATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCG
-AGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTA
-TCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGC
-TGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTTGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACT
-TCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAAC
-AAAACAACGTACACGCGTTATTTAAATAGCCGATATGAGGCGCGGCGCTATAAGGCGCTCATGAGCATGCCCGCGACT
-AAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAG
-GCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTC
-GCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGA
-AAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTG
-GGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATG
-AGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGAC
-ATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGATGGCGCGCGGATTACGCAT
-AGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGAT
-CATGTCATCGAACGCATTAATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTAT
-GACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTT
-GTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGGTTTCAGTAAAAAT
-GCGGGTATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGT
-GCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATT
-CGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCC
-ATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGCAATATCAAC
-GTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTACGTGGTCAATTTATG
-GCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGAC
-AGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGAATTCCGCGG
-CATATAGCGGCGCGATAGCATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGT
-GCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCAC
-TTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGT
-GCGCGACAAAGATGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTT
-TCAGCACTTCAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAG
-CAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCC
-CGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTT
-CGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGG
-CAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGG
-GAAAATTGAAGAAGAGGGTGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGG
-CTCGCTGAAATAACGCTCAGAGGCGCGCGCGCGCTATATACGCGCAGTGTTTATTGGCATAGTTAGCCTGTTTCCTGA
-AATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAG
-TCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGAT
-GGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCC
-TCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTA
-CGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGG
-CGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAAT
-CGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACC
-GCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAG
-AAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGC
-ACAACAGCAGCATAAACATGATGGGATGGCATAGCCGTCATATGGGCTCTCAGAGGAGACGCGCTAATGCGCAGTACG
-TGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAA
-AAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTC
-CTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAG
-GTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGA
-ATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAAT
-GGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATAC
-CGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGC
-GCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTT
-TGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAA
-GGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGCATACGCGCGC
-GATATATATTCGCGCAGAGGCGCGCATAGCGATGAAGTTTGTTGCGCCCGAACAGGCACCGGAACAGGCGGAGGTCAT
-CAAAAATACGCCGTTCTGGCCTGATGTGGACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTGACGCA
-GCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGCA
-GATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCA
-CAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAA
-GCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGT
-ACCGCACTGTACGGTGGAGCTTATCTGAACGGCTAGCGCGTAGCGGCAGTCTCGGATGAATAATCATTTTGGGAAAGG
-GTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGG
-CTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCT
-GACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTT
-CTTTATGGCCGGTTATCGACTCGAAGGTTGACGATCGCGCGCAGGAGGAGAGCTCTCTTCTTCTAGAGCATGTCTACG
-CTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGT
-CATCCGCATGTTGAGATGATCGTCCCTCAGCTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTG
-CTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGT
-TTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAG
-AACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTG
-GAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGTATTACCGCCAGGCGGTGGCATATTAC
-GCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTC
-GATTTTCTTGGACTGCACAGTTGCTGACGGCTATGCGCGCGCTCGATGATTGACCCTATTTTTGCGTCCTGTACGCTA
-ATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATG
-ATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTG
-CTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCC
-AAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCC
-GGATCGGCGATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGC
-TTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTACGCG
-CTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGT
-ATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGTATGGCGCTAAAA
-GTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGTCGGCGGCATTGTGCAGGGGATTTTCACCGCC
-ATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGAT
-TTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCC
-TTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATC
-CTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATTGGTCCGGCCATTCTGATTTTTACCCCG
-ATTCTGCTGCCAATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATT
-GGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATT
-AAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTTC
-TTACCCCGTCTACTGGGCATCATGTAA" } } ,
- seq {
- id {
- local
- str "genome1_2_1" } ,
- descr {
- title "5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Genus
- species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 126 ,
- seq-data
- ncbieaa "MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADG
-KHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNNVHALFK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 14 ,
- data
- prot {
- name {
- "5-carboxymethyl-2-hydroxymuconate Delta-isomerase" } ,
- ec {
- "5.3.3.10" } } ,
- location
- int {
- from 0 ,
- to 125 ,
- id
- local
- str "genome1_2_1" } } } } } } ,
- seq {
- id {
- local
- str "genome1_2_2" } ,
- descr {
- title "hypothetical protein GKEGNCBE_00004 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 469 ,
- seq-data
- ncbieaa "MSMPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFK
-QAFADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTLDVRGSDCVIKG
-VAMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDIL
-ISDHVIERINCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPGF
-SKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISSGNTPS
-FVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSV
-DIDRINHQTVNVEAVNFSLPKRGG" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 15 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 468 ,
- id
- local
- str "genome1_2_2" } } } } } } ,
- seq {
- id {
- local
- str "genome1_2_3" } ,
- descr {
- title "Histidine transport ATP-binding protein HisP [Genus
- species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 257 ,
- seq-data
- ncbieaa "MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE
-KPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL
-KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE
-MGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 16 ,
- data
- prot {
- name {
- "Histidine transport ATP-binding protein HisP" } } ,
- location
- int {
- from 0 ,
- to 256 ,
- id
- local
- str "genome1_2_3" } } } } } } ,
- seq {
- id {
- local
- str "genome1_2_4" } ,
- descr {
- title "tRNA (guanine-N(1)-)-methyltransferase [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 244 ,
- seq-data
- ncbieaa "MFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGMLMMVQP
-LRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELP
-AMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPE
-LLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 17 ,
- data
- prot {
- name {
- "tRNA (guanine-N(1)-)-methyltransferase" } ,
- ec {
- "2.1.1.228" } } ,
- location
- int {
- from 0 ,
- to 243 ,
- id
- local
- str "genome1_2_4" } } } } } } ,
- seq {
- id {
- local
- str "genome1_2_5" } ,
- descr {
- title "tRNA (guanine-N(1)-)-methyltransferase [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 275 ,
- seq-data
- ncbieaa "MMGWHSRHMGSQRRRANAQYVFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQS
-WSPRDFAHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCG
-RYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGME
-VPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 18 ,
- data
- prot {
- name {
- "tRNA (guanine-N(1)-)-methyltransferase" } ,
- ec {
- "2.1.1.228" } } ,
- location
- int {
- from 0 ,
- to 274 ,
- id
- local
- str "genome1_2_5" } } } } } } ,
- seq {
- id {
- local
- str "genome1_2_6" } ,
- descr {
- title "hypothetical protein GKEGNCBE_00008 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 154 ,
- seq-data
- ncbieaa "MKFVAPEQAPEQAEVIKNTPFWPDVDLSEFRSVMRTDGTVTQPRLKQVVLTAISE
-VNAELYDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWARAVLNERYQDYDATASGVKRGEELAEASGDLW
-RDARWAISRVQDVPHCTVELI" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 19 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 153 ,
- id
- local
- str "genome1_2_6" } } } } } } ,
- seq {
- id {
- local
- str "genome1_2_7" } ,
- descr {
- title "hypothetical protein GKEGNCBE_00009 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 86 ,
- seq-data
- ncbieaa "MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRY
-GLDKEMVMDFFKENHSGMAVRFFMAGYRLEG" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 20 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 85 ,
- id
- local
- str "genome1_2_7" } } } } } } ,
- seq {
- id {
- local
- str "genome1_2_8" } ,
- descr {
- title "hypothetical protein GKEGNCBE_00010 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 193 ,
- seq-data
- ncbieaa "MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLV
-LEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESRHIYDLKVMQIDPL
-EAPDLIWLLQQTGDEVLYYRQAVAYYASCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 21 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 192 ,
- id
- local
- str "genome1_2_8" } } } } } } ,
- seq {
- id {
- local
- str "genome1_2_9" } ,
- descr {
- title "C4-dicarboxylate TRAP transporter large permease protein
- DctM [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 435 ,
- seq-data
- ncbieaa "MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMF
-SSLDSFALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMS
-AREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFT
-VQKGMALKVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFL
-LATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVHFGI
-IMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 22 ,
- data
- prot {
- name {
- "C4-dicarboxylate TRAP transporter large permease
- protein DctM" } } ,
- location
- int {
- from 0 ,
- to 434 ,
- id
- local
- str "genome1_2_9" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 5 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_1" ,
- location
- int {
- from 15 ,
- to 395 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:Q05354" } } ,
- xref {
- {
- data
- gene {
- locus "hpcD" ,
- locus-tag "GKEGNCBE_00003" } } } } ,
- {
- id
- local
- id 6 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_2" ,
- location
- int {
- from 427 ,
- to 1836 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "GKEGNCBE_00004" } } } } ,
- {
- id
- local
- id 7 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_3" ,
- location
- int {
- from 1868 ,
- to 2641 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P02915" } } ,
- xref {
- {
- data
- gene {
- locus "hisP" ,
- locus-tag "GKEGNCBE_00005" } } } } ,
- {
- id
- local
- id 8 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_4" ,
- location
- int {
- from 2708 ,
- to 3442 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P0A873" } } ,
- xref {
- {
- data
- gene {
- locus "trmD_1" ,
- locus-tag "GKEGNCBE_00006" } } } } ,
- {
- id
- local
- id 9 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_5" ,
- location
- int {
- from 3426 ,
- to 4253 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P0A873" } } ,
- xref {
- {
- data
- gene {
- locus "trmD_2" ,
- locus-tag "GKEGNCBE_00007" } } } } ,
- {
- id
- local
- id 10 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_6" ,
- location
- int {
- from 4298 ,
- to 4762 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "GKEGNCBE_00008" } } } } ,
- {
- id
- local
- id 11 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_7" ,
- location
- int {
- from 4817 ,
- to 5077 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "GKEGNCBE_00009" } } } } ,
- {
- id
- local
- id 12 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_8" ,
- location
- int {
- from 5116 ,
- to 5697 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "GKEGNCBE_00010" } } } } ,
- {
- id
- local
- id 13 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome1_2_9" ,
- location
- int {
- from 5716 ,
- to 7023 ,
- strand plus ,
- id
- local
- str "genome1_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:O07838" } } ,
- xref {
- {
- data
- gene {
- locus "dctM" ,
- locus-tag "GKEGNCBE_00011" } } } } } } } } } }
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tbl b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tbl
deleted file mode 100644
index bdd6ca89..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tbl
+++ /dev/null
@@ -1,71 +0,0 @@
->Feature genome1_1
-213 1880 CDS
- EC_number 6.1.1.18
- dbxref COG:COG0008
- gene glnS
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P00962
- locus_tag GKEGNCBE_00001
- product Glutamine--tRNA ligase
-1916 2746 CDS
- EC_number 3.5.1.28
- dbxref COG:COG3023
- gene amiD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P75820
- locus_tag GKEGNCBE_00002
- product N-acetylmuramoyl-L-alanine amidase AmiD
->Feature genome1_2
-16 396 CDS
- EC_number 5.3.3.10
- gene hpcD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:Q05354
- locus_tag GKEGNCBE_00003
- product 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-428 1837 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag GKEGNCBE_00004
- product hypothetical protein
-1869 2642 CDS
- dbxref COG:COG4598
- gene hisP
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P02915
- locus_tag GKEGNCBE_00005
- product Histidine transport ATP-binding protein HisP
-2709 3443 CDS
- EC_number 2.1.1.228
- dbxref COG:COG0336
- gene trmD_1
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P0A873
- locus_tag GKEGNCBE_00006
- product tRNA (guanine-N(1)-)-methyltransferase
-3427 4254 CDS
- EC_number 2.1.1.228
- dbxref COG:COG0336
- gene trmD_2
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P0A873
- locus_tag GKEGNCBE_00007
- product tRNA (guanine-N(1)-)-methyltransferase
-4299 4763 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag GKEGNCBE_00008
- product hypothetical protein
-4818 5078 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag GKEGNCBE_00009
- product hypothetical protein
-5117 5698 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag GKEGNCBE_00010
- product hypothetical protein
-5717 7024 CDS
- dbxref COG:COG1593
- gene dctM
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:O07838
- locus_tag GKEGNCBE_00011
- product C4-dicarboxylate TRAP transporter large permease protein DctM
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tsv b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tsv
deleted file mode 100644
index f71d90c3..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.tsv
+++ /dev/null
@@ -1,12 +0,0 @@
-locus_tag ftype length_bp gene EC_number COG product
-GKEGNCBE_00001 CDS 1668 glnS 6.1.1.18 COG0008 Glutamine--tRNA ligase
-GKEGNCBE_00002 CDS 831 amiD 3.5.1.28 COG3023 N-acetylmuramoyl-L-alanine amidase AmiD
-GKEGNCBE_00003 CDS 381 hpcD 5.3.3.10 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-GKEGNCBE_00004 CDS 1410 hypothetical protein
-GKEGNCBE_00005 CDS 774 hisP COG4598 Histidine transport ATP-binding protein HisP
-GKEGNCBE_00006 CDS 735 trmD_1 2.1.1.228 COG0336 tRNA (guanine-N(1)-)-methyltransferase
-GKEGNCBE_00007 CDS 828 trmD_2 2.1.1.228 COG0336 tRNA (guanine-N(1)-)-methyltransferase
-GKEGNCBE_00008 CDS 465 hypothetical protein
-GKEGNCBE_00009 CDS 261 hypothetical protein
-GKEGNCBE_00010 CDS 582 hypothetical protein
-GKEGNCBE_00011 CDS 1308 dctM COG1593 C4-dicarboxylate TRAP transporter large permease protein DctM
diff --git a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.txt b/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.txt
deleted file mode 100644
index 9cd2780b..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome1.fst-split5N.fna-prokkaRes/EXAM.0219.00001.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-organism: Genus species strain
-contigs: 2
-bases: 9808
-CDS: 11
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
deleted file mode 100644
index b7998dca..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
+++ /dev/null
@@ -1,8 +0,0 @@
->this_is_genome_1
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATTATCGGCTCGTCCGGTTCCGGTAAAAGCACTTTTTTGCGCTGCATTAACTTCCTCGAAAAATCGAGCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAACCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCGCACGTGATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCAATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAAACGCTAGAGGACGCGCCTCTCAGAGAGCGCGCTCTCTCAGAGAGGCGCGCGCCTCTTTCGCAGAGACCNNCGCTCATGAGCGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCCAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGGCAGACTGTGGTCGTGCCGTCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGATACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCTGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGACGGCGCGCGGATTACGCATAGTCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAATGTCGCGATTCATGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCGCCTATGACAATAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAACTGGTACACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGTAACGCCCCCTCATTTGTTGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTTTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTTGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACACTCGCGCATAGAGAGCTCTCAGAGGAGCGCGCGCGCTATAGCGCGC
->this_is_genome_2
-CGCGATAATATAGCGCGCGCTCATAGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTGGAAGATATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAACGCCATATTATAGCGCGCCTCATAAGAGCGGCCTATAGCGCGCTANNNATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCAGAGATTCGCGCGTTCAGAGAGGAGCTCTCTCATAGACGCGCGCATATGCGCTCTAGAGAGGCGCGCCTAATGGCGCGCTATGATGAAAGCGCTACTGTGGCTGGTTGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCTTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATCCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAAAGCGCTCTCAGAGAGAGCGCTCTGCAGATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCACATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTACGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCCTCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTCATCAATAAAGGCCTGGCCTACGTTGATGAGCTGACGCCGGAGCAGATCCGCGAATACCGTGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTGGAAGAAAACCTCGCGCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCGTCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACCGGCACGAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGACAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTCGCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACACGTCGAAGGTTGGGATGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGAAAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAACTACCCGCAGGGCGAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCGGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGATGCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGTAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAACCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGGAAAGCTTTCCAGTTTGAACGTGAAGGTTACTTCTGCCTTGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAATAA
->this_is_genome_3
-ACGCGCTATAGGGCTCTCAGAGAGTCTCAGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCATGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAACTCATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGGCCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCACTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGAGATCGCGCATAGCGCGCGGCGAGATCCGCGAGACATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCTGGTTATCGACTCGAAGGTTGAACGCCTCTAGAGCGCTAGAGGCGCGCGCGATATACGCGGCGCGAGACATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTACTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGGGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACCGGATATACGCGCGCGCGCTATATAGCGCGCGCGGCGATATAGCGCATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAAATCATCAGAAATACGCCGTTCTGGCCTGATGTGGACCTGTCGGAGTTTCGCAGCATGATGCGCACTGATGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTTGCGCTGTCGGCAATTTCGGAGGTCAACGCAGAGCTGTATGAGTTTCGCAGACGCCAGCAGATGCTGGGGTATGCCTCGCTGGCAGAAGTCCCGGCGGAACAACTGGACGGCAAAAGCGAGCGCATTCAGCACTATTTCAACGCGGTTTACTGCTGGGCACGCGCCATGCTCAACGAACGTTACCAGGACTATGACGCCACGGCATCCGGTGTGAAGCGGGGCGAAGAACTGGCAGAAGCCAGCGGTGATTTGTGGCGTGACGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCGCCGCACTGCACAGTGGAGCTTATCTGA
->this_is_genome_4
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGACTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTACACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCCGCCTCAACCTCTATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGTTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATTGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATAGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATTATGACTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATAGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGACGTTATCAAACCGTTGATGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTTTTTACCCCGTCTACTGGGCATCATGTAAACGCTCATAGGCGGCGCGCGCGCTCTCAGGAATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCGTTCTGGCCTGATGTGAACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCACCGCACTGTACGGTGGAGCTTATCTGACGCTCATAGGCGCGCGCTCATAGCGCGATGGAAACAAATATTACCTGGCAACAATTGATAGATGAATATTTCTTCGCAAAACCTCTGCGCTCAGCATCTGAATGGAGTTACACCAAAGTCTTCAAATCATTTGTACATTATATGGGGCCGTTAAGCTGCCCTAATGATGTGACATATCACAAAGTGCTTGCCTGGCGCCGTTTTCTTTTAAAAGAGAAAAAGCTGTCCGGACGTACCTGGAATAACAAGGTGGCGCATATGCGGGCCATCTTTAACTACGGAATACAGCGAGGGTTACTGCACTATGACGAAAATCCGTTTAACAATTCGGTAGTTAAACCGGACAAGAAGAGAAAGAAAACGCTCACTCAGGCACAGATTGAGTATGCCTATCAGATCATGGAGCAGTATGAAAATCAGGAGAATACAGGGCTGGGACTGAAATATTCCCGCTGCGCCTTATTTCCTGCATGGTTCTGGCTCACTGTCCTGGATACGCTCTATTACACAGGGATACGTCAGAACCAGTTATTACATATTCGGCTGAATGATGTTGATTTGAGAGAAGGGCAGATTCGGCTGATTACGGAGGGGTGTAAAAATCACAAAGAACACTATGTGCCGGTGATCAGTTTTCTGCGTCCACGGCTGACCTGTTTAATGGAGAAAGCGCAGAGCGAAGGATTGAAAGGTAATGACCGCCTGTTCAATATTGCACTTTTTACCGGCAAAGATCCCGCCATTGGCGATGACATGGATTCTCCTCAGGTAAGAGCATTCTTCCGTCGTCTGTCCAAGGAGTGTCAGTTTGCGATCAGTCCTCATCGTTTCAGACACACGCTGGCCACGGAGATGATGAAAATGCCGGAACAGAATCTGCATATGGCGCAAAGTGTGCTGGGTCATTCAAACATGAAATCCACGCTGGAGTATGTGGAGAATGATATTGCAGTGATGGGGAGGGCTCTGGAAGCGCAGTTTATGCAGATTAAGGCAGCACATGCCCGAAGCATTTACAGTGGGTTGACAAAGAATAGATAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokka.log b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokka.log
deleted file mode 100644
index 4e555a86..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokka.log
+++ /dev/null
@@ -1,119 +0,0 @@
-[13:18:45] This is prokka 1.14-dev
-[13:18:45] Written by Torsten Seemann <torsten.seemann@gmail.com>
-[13:18:45] Homepage is https://github.com/tseemann/prokka
-[13:18:45] Local time is Tue Feb 12 13:18:45 2019
-[13:18:45] You are aperrin
-[13:18:45] Operating system is darwin
-[13:18:45] You have BioPerl 1.006924
-[13:18:45] System has 8 cores.
-[13:18:45] Will use maximum of 1 cores.
-[13:18:45] Annotating as >>> Bacteria <<<
-[13:18:45] Generating locus_tag from 'Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna' contents.
-[13:18:45] Setting --locustag OHLPOIIB from MD5 8159822bce92b47adcc120629558b9c6
-[13:18:45] Creating new output folder: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes
-[13:18:45] Running: mkdir -p Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes
-[13:18:45] Using filename prefix: GEN2.0219.00001.XXX
-[13:18:45] Setting HMMER_NCPU=1
-[13:18:45] Writing log to: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.log
-[13:18:45] Command: /usr/local/bin/prokka --outdir Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes --cpus 1 --prefix GEN2.0219.00001 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
-[13:18:45] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin
-[13:18:45] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common
-[13:18:45] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin
-[13:18:45] Looking for 'aragorn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/aragorn
-[13:18:45] Determined aragorn version is 1.2
-[13:18:45] Looking for 'barrnap' - found /usr/local/bin/barrnap
-[13:18:45] Determined barrnap version is 0.8
-[13:18:45] Looking for 'blastp' - found /Users/aperrin/Softwares/bin/blastp
-[13:18:45] Determined blastp version is 2.3
-[13:18:45] Looking for 'cmpress' - found /usr/local/bin/cmpress
-[13:18:45] Determined cmpress version is 1.1
-[13:18:45] Looking for 'cmscan' - found /usr/local/bin/cmscan
-[13:18:45] Determined cmscan version is 1.1
-[13:18:45] Looking for 'egrep' - found /usr/bin/egrep
-[13:18:45] Looking for 'find' - found /usr/bin/find
-[13:18:45] Looking for 'grep' - found /usr/bin/grep
-[13:18:45] Looking for 'hmmpress' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/hmmpress
-[13:18:45] Determined hmmpress version is 3.1
-[13:18:45] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
-[13:18:45] Determined hmmscan version is 3.1
-[13:18:45] Looking for 'java' - found /usr/bin/java
-[13:18:45] Looking for 'less' - found /usr/bin/less
-[13:18:45] Looking for 'makeblastdb' - found /Users/aperrin/Softwares/bin/makeblastdb
-[13:18:45] Determined makeblastdb version is 2.3
-[13:18:45] Looking for 'minced' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common/minced
-[13:18:45] Determined minced version is 2.0
-[13:18:45] Looking for 'parallel' - found /usr/local/bin/parallel
-[13:18:45] Determined parallel version is 20181022
-[13:18:45] Looking for 'prodigal' - found /usr/local/bin/prodigal
-[13:18:45] Determined prodigal version is 2.6
-[13:18:45] Looking for 'prokka-genbank_to_fasta_db' - found /Users/aperrin/Softwares/src/prokka/bin/prokka-genbank_to_fasta_db
-[13:18:45] Looking for 'sed' - found /usr/bin/sed
-[13:18:45] Looking for 'tbl2asn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/tbl2asn
-[13:18:45] Determined tbl2asn version is 25.6
-[13:18:45] Using genetic code table 11.
-[13:18:45] Loading and checking input file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
-[13:18:45] Wrote 4 contigs totalling 10711 bp.
-[13:18:45] Predicting tRNAs and tmRNAs
-[13:18:45] Running: aragorn -l -gc11 -w Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.fna
-[13:18:45] Found 0 tRNAs
-[13:18:45] Predicting Ribosomal RNAs
-[13:18:45] Running Barrnap with 1 threads
-[13:18:45] Found 0 rRNAs
-[13:18:45] Skipping ncRNA search, enable with --rfam if desired.
-[13:18:45] Total of 0 tRNA + rRNA features
-[13:18:45] Searching for CRISPR repeats
-[13:18:46] Found 0 CRISPRs
-[13:18:46] Predicting coding sequences
-[13:18:46] Contigs total 10711 bp, so using meta mode
-[13:18:46] Running: prodigal -i Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.fna -c -m -g 11 -p meta -f sco -q
-[13:18:46] Found 13 CDS
-[13:18:46] Connecting features back to sequences
-[13:18:46] Not using genus-specific database. Try --usegenus to enable it.
-[13:18:46] Annotating CDS, please be patient.
-[13:18:46] Will use 1 CPUs for similarity searching.
-[13:18:46] There are still 13 unannotated CDS left (started with 13)
-[13:18:46] Will use blast to search against /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot with 1 CPUs
-[13:18:46] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/sprot\.faa | parallel --gnu --plain -j 1 --block 1697 --recstart '>' --pipe blastp -query - -db /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/sprot\.blast 2> /dev/null
-[13:18:47] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/sprot.faa
-[13:18:47] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/sprot.blast
-[13:18:47] There are still 5 unannotated CDS left (started with 13)
-[13:18:47] Will use hmmer3 to search against /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm with 1 CPUs
-[13:18:47] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 1 --block 521 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm /dev/stdin > Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.hmmer3 2> /dev/null
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/HAMAP.hmm.faa
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/HAMAP.hmm.hmmer3
-[13:18:48] Labelling remaining 5 proteins as 'hypothetical protein'
-[13:18:48] Found 8 unique /gene codes.
-[13:18:48] Fixed 0 colliding /gene names.
-[13:18:48] Adding /locus_tag identifiers
-[13:18:48] Assigned 13 locus_tags to CDS and RNA features.
-[13:18:48] Writing outputs to Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/
-[13:18:48] Generating annotation statistics file
-[13:18:48] Generating Genbank and Sequin files
-[13:18:48] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka' -Z Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.err -i Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.fsa 2> /dev/null
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/errorsummary.val
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.dr
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fixedproducts
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.ecn
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.val
-[13:18:48] Repairing broken .GBK output that tbl2asn produces...
-[13:18:48] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.gbf > Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.gbk
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gbf
-[13:18:48] Output files:
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gff
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tbl
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.sqn
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fna
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tsv
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.err
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.txt
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fsa
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.faa
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.log
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.ffn
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gbk
-[13:18:48] Annotation finished successfully.
-[13:18:48] Walltime used: 0.05 minutes
-[13:18:48] If you use this result please cite the Prokka paper:
-[13:18:48] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
-[13:18:48] Type 'prokka --citation' for more details.
-[13:18:48] Share and enjoy!
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.err b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.err
deleted file mode 100644
index d2f6f326..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.err
+++ /dev/null
@@ -1,146 +0,0 @@
-Discrepancy Report Results
-
-Summary
-FATAL: MISSING_PROTEIN_ID:13 proteins have invalid IDs.
-DISC_SOURCE_QUALS_ASNDISC:strain (all present, all same)
-DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
-DISC_FEATURE_COUNT:CDS: 13 present
-DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present
-FEATURE_LOCATION_CONFLICT:13 features have inconsistent gene locations.
-DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
-ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same)
-MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments
-MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA.
-TECHNIQUE_NOT_TSA:4 technique are not set as TSA
-MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments.
-MISSING_PROJECT:17 sequences do not include project.
-DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
-
-
-Detailed Report
-
-FATAL: DiscRep_ALL:MISSING_PROTEIN_ID::13 proteins halid nvalid IDs.
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1_1 (length 257)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1_2 (length 467)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2_1 (length 74)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2_2 (length 126)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2_3 (length 277)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2_4 (length 555)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3_1 (length 255)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3_2 (length 86)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3_3 (length 193)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3_4 (length 122)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4_1 (length 435)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4_2 (length 154)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4_3 (length 337)
-
-DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all same)
-DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'strain' for strain
-DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
-DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname
-DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 13 present
-DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1 (length 2308, 2 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2 (length 3295, 3 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3 (length 2263)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4 (length 2845)
-
-DiscRep_ALL:FEATURE_LOCATION_CONFLICT::13 features have inconsistent gene locations.
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS Histidine transport ATP-binding protein HisP this_is_genome_1:1-774 OHLPOIIB_00001
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS hypothetical protein this_is_genome_1:857-2260 OHLPOIIB_00002
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS Phage shock protein B this_is_genome_2:28-252 OHLPOIIB_00003
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS 5-carboxymethyl-2-hydroxymuconate Delta-isomerase this_is_genome_2:301-681 OHLPOIIB_00004
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS N-acetylmuramoyl-L-alanine amidase AmiD this_is_genome_2:764-1597 OHLPOIIB_00005
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS Glutamine--tRNA ligase this_is_genome_2:1628-3295 OHLPOIIB_00006
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS tRNA (guanine-N(1)-)-methyltransferase this_is_genome_3:30-797 OHLPOIIB_00007
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS hypothetical protein this_is_genome_3:862-1122 OHLPOIIB_00008
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS hypothetical protein this_is_genome_3:1170-1751 OHLPOIIB_00009
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS hypothetical protein this_is_genome_3:1895-2263 OHLPOIIB_00010
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS C4-dicarboxylate TRAP transporter large permease protein DctM this_is_genome_4:1-1308 OHLPOIIB_00011
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS hypothetical protein this_is_genome_4:1340-1804 OHLPOIIB_00012
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:CDS Tyrosine recombinase XerC this_is_genome_4:1832-2845 OHLPOIIB_00013
-
-DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
-
-DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-
-DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1 (length 2308, 2 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2 (length 3295, 3 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3 (length 2263)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4 (length 2845)
-
-DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA.
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1 (length 2308, 2 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2 (length 3295, 3 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3 (length 2263)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4 (length 2845)
-
-DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1 (length 2308, 2 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2 (length 3295, 3 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3 (length 2263)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4 (length 2845)
-
-DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments.
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1 (length 2308, 2 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2 (length 3295, 3 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3 (length 2263)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4 (length 2845)
-
-DiscRep_ALL:MISSING_PROJECT::17 sequences do not include project.
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1 (length 2308, 2 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1_1 (length 257)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1_2 (length 467)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2 (length 3295, 3 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2_1 (length 74)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2_2 (length 126)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2_3 (length 277)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2_4 (length 555)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3 (length 2263)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3_1 (length 255)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3_2 (length 86)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3_3 (length 193)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3_4 (length 122)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4 (length 2845)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4_1 (length 435)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4_2 (length 154)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4_3 (length 337)
-
-DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
-DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
-DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_1 (length 2308, 2 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_2 (length 3295, 3 other)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_3 (length 2263)
-Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001:this_is_genome_4 (length 2845)
-
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.faa b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.faa
deleted file mode 100644
index e1d7e189..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.faa
+++ /dev/null
@@ -1,77 +0,0 @@
->OHLPOIIB_00001 Histidine transport ATP-binding protein HisP
-MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKSSEG
-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWNHMTVLENVMEAPIQV
-LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT
-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGNPEQVF
-GNPQSPRLQQFLKGSLK
->OHLPOIIB_00002 hypothetical protein
-MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRQTVDIKDYPADDGIASFKQAFADGQ
-TVVVPSGWVCENINAAITIPAGKTLRIQGAVRGNGRGRFILLDGCQVVGEQGGSLHNVTL
-DVRGSDCVIKGVTMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMD
-GARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERIDCTNGKINWGIGIGLAGSAYDN
-SYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSKNAGIDNATIAI
-YGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISS
-GNAPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFM
-ARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
->OHLPOIIB_00003 Phage shock protein B
-MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLLQLTDDAQRMRERIQAL
-EDILDAEHPNWRER
->OHLPOIIB_00004 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-MPHFIAECTENIREQADLPSLFSKVNEALAATGIFPIGGIRSRAHWLDTWQMADGKHDYA
-FVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNN
-VHALFK
->OHLPOIIB_00005 N-acetylmuramoyl-L-alanine amidase AmiD
-MMKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVS
-LATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIE
-LENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGP
-RFPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQ
-RVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->OHLPOIIB_00006 Glutamine--tRNA ligase
-MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQG
-QCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSDYFDQLHAYAVELINKGLA
-YVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMA
-SPFIVMRDPVLYRIKFAEHHQTGTKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRL
-YDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR
-GYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQG
-ESEMVTMPNHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLVMGKEVRLRNAYVIK
-AERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSVAHALPIEIRLYDRLFSV
-PNPGAAEDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADKLVF
-NRTVGLRDTWAKAGE
->OHLPOIIB_00007 tRNA (guanine-N(1)-)-methyltransferase
-MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGM
-LMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDE
-RVIQAEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPH
-YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF
-KTEHAQQQHKHDGMA
->OHLPOIIB_00008 hypothetical protein
-MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRYGLDKE
-MVMDFFKENHSGMAVRFFMAGYRLEG
->OHLPOIIB_00009 hypothetical protein
-MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLVLEHGG
-APLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
-HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDY
-FNQIVDFLGLHSC
->OHLPOIIB_00010 hypothetical protein
-MMRTDGTVTQPRLKQVALSAISEVNAELYEFRRRQQMLGYASLAEVPAEQLDGKSERIQH
-YFNAVYCWARAMLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCTVE
-LI
->OHLPOIIB_00011 C4-dicarboxylate TRAP transporter large permease protein DctM
-MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS
-FALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIA
-ASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFA
-GGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
-GIFTAIEASAIAVVYTLLLTIVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSM
-SITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMTKLGV
-DPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEDVIKPLMPFYGAIIGVLLLITY
-IPEITLFLPRLLGIM
->OHLPOIIB_00012 hypothetical protein
-MKFVAPEQAPEQAEVIKNTPFWPDVNLSEFRSVMRTDGTVTQPRLKQVVLTAISEVNAEL
-YDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWARAVLNERYQDYDATASGVK
-RGEELAEASGDLWRDARWAISRVQDAPHCTVELI
->OHLPOIIB_00013 Tyrosine recombinase XerC
-METNITWQQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTYHKVLAWRRFL
-LKEKKLSGRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSVVKPDKKRKKTLTQAQIEY
-AYQIMEQYENQENTGLGLKYSRCALFPAWFWLTVLDTLYYTGIRQNQLLHIRLNDVDLRE
-GQIRLITEGCKNHKEHYVPVISFLRPRLTCLMEKAQSEGLKGNDRLFNIALFTGKDPAIG
-DDMDSPQVRAFFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQSVLGHSNMKSTL
-EYVENDIAVMGRALEAQFMQIKAAHARSIYSGLTKNR
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.ffn b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.ffn
deleted file mode 100644
index dfb0f1db..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.ffn
+++ /dev/null
@@ -1,185 +0,0 @@
->OHLPOIIB_00001 Histidine transport ATP-binding protein HisP
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATTATCGGCTCGTCC
-GGTTCCGGTAAAAGCACTTTTTTGCGCTGCATTAACTTCCTCGAAAAATCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAACCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCG
-CACGTGATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCAATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
->OHLPOIIB_00002 hypothetical protein
-ATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTT
-CTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCCAGACCGTCGATATT
-AAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGGCAG
-ACTGTGGTCGTGCCGTCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCG
-GCGGGAAAAACGCTGCGGATACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATT
-TTGCTGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTG
-GATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTC
-GCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGAC
-ATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGAC
-GGCGCGCGGATTACGCATAGTCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAAT
-GTCGCGATTCATGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGT
-ACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCGCCTATGACAAT
-AGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGAT
-TGCCGACAACTGGTACACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCC
-AAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATT
-TATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTC
-ATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAAC
-GCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCC
-GGTAACGCCCCCTCATTTGTTGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAA
-CTGCATAATCAACCGCAGCACCTCTTTTTGCGTAATATCAACGTGATGCAAACTTCAGCG
-ATTGGCCCGGCGTTAAAAATGCATTTTGATTTGCGTAAAGATGTCCGTGGTCAATTTATG
-GCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAG
-AGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTT
-TCGCTGCCGAAGCGGGGAGGGTAA
->OHLPOIIB_00003 Phage shock protein B
-ATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATT
-TGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAG
-CAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTG
-GAAGATATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAA
->OHLPOIIB_00004 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG
-TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAG
->OHLPOIIB_00005 N-acetylmuramoyl-L-alanine amidase AmiD
-ATGATGAAAGCGCTACTGTGGCTGGTTGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGC
-GAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCG
-GCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCG
-CTGGCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCA
-TTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCTTGGCAT
-GCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAG
-CTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCC
-GCGCAAATTCAGGCATTGATCCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAA
-CCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCG
-CGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGT
-GTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTT
-GCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAG
-CGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGAT
-GCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->OHLPOIIB_00006 Glutamine--tRNA ligase
-ATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTG
-GCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTG
-CACATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGC
-CAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTACGTTGAT
-TCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCC
-TCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTCATCAATAAAGGCCTGGCC
-TACGTTGATGAGCTGACGCCGGAGCAGATCCGCGAATACCGTGGTACGCTGACCGCGCCG
-GGTAAAAACAGCCCGTTCCGCGATCGCAGCGTGGAAGAAAACCTCGCGCTATTTGAAAAA
-ATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGACATGGCG
-TCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCAT
-CAGACCGGCACGAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGAT
-GCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGACAACCGTCGTCTG
-TACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGAATTCTCG
-CGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGAC
-AAACACGTCGAAGGTTGGGATGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGC
-GGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGAC
-AACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGAAAACGCG
-CCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAACTACCCGCAGGGC
-GAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAA
-GTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCGGATTTCCGCGAAGAAGCGAACAAA
-CAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGTCATTAAA
-GCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACCTATGAT
-GCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGG
-GTTAGCGTAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTG
-CCGAACCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATTAGTGATT
-AAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGGAAAGCTTTCCAGTTT
-GAACGTGAAGGTTACTTCTGCCTTGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTT
-AACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAATAA
->OHLPOIIB_00007 tRNA (guanine-N(1)-)-methyltransferase
-GTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGG
-GTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGAC
-TTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATG
-TTAATGATGGTGCAACCCTTGCGGGACGCCATTCATGCAGCAAAAGCCGCGGCAGGTGAA
-GGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGC
-GAGCTGGCCACGAATCAGAAACTCATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAG
-CGCGTAATTCAGGCCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGT
-GGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTG
-GGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCAC
-TATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAAC
-CATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCACTGGGCCGAACCTGGCTTAGAAGA
-CCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTC
-AAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAG
->OHLPOIIB_00008 hypothetical protein
-ATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCT
-GAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGAT
-CGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAA
-ATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCT
-GGTTATCGACTCGAAGGTTGA
->OHLPOIIB_00009 hypothetical protein
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTG
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTACTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGGGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
->OHLPOIIB_00010 hypothetical protein
-ATGATGCGCACTGATGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTTGCGCTGTCGGCA
-ATTTCGGAGGTCAACGCAGAGCTGTATGAGTTTCGCAGACGCCAGCAGATGCTGGGGTAT
-GCCTCGCTGGCAGAAGTCCCGGCGGAACAACTGGACGGCAAAAGCGAGCGCATTCAGCAC
-TATTTCAACGCGGTTTACTGCTGGGCACGCGCCATGCTCAACGAACGTTACCAGGACTAT
-GACGCCACGGCATCCGGTGTGAAGCGGGGCGAAGAACTGGCAGAAGCCAGCGGTGATTTG
-TGGCGTGACGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCGCCGCACTGCACAGTGGAG
-CTTATCTGA
->OHLPOIIB_00011 C4-dicarboxylate TRAP transporter large permease protein DctM
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGACTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTC
-TCTTACACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCC
-GCCTCAACCTCTATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGTTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATTGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATAGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATC
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATTATGACTAAACTGGGCGTC
-GATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATAGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGACGTT
-ATCAAACCGTTGATGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCACACTGTTTTTACCCCGTCTACTGGGCATCATGTAA
->OHLPOIIB_00012 hypothetical protein
-ATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAGGTCATCAAAAATACGCCG
-TTCTGGCCTGATGTGAACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTG
-ACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTG
-TACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCA
-GAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCACAACGCTGTTTTTTGCTGG
-GCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGCGTGAAG
-CGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATC
-AGCCGGGTGCAGGATGCACCGCACTGTACGGTGGAGCTTATCTGA
->OHLPOIIB_00013 Tyrosine recombinase XerC
-ATGGAAACAAATATTACCTGGCAACAATTGATAGATGAATATTTCTTCGCAAAACCTCTG
-CGCTCAGCATCTGAATGGAGTTACACCAAAGTCTTCAAATCATTTGTACATTATATGGGG
-CCGTTAAGCTGCCCTAATGATGTGACATATCACAAAGTGCTTGCCTGGCGCCGTTTTCTT
-TTAAAAGAGAAAAAGCTGTCCGGACGTACCTGGAATAACAAGGTGGCGCATATGCGGGCC
-ATCTTTAACTACGGAATACAGCGAGGGTTACTGCACTATGACGAAAATCCGTTTAACAAT
-TCGGTAGTTAAACCGGACAAGAAGAGAAAGAAAACGCTCACTCAGGCACAGATTGAGTAT
-GCCTATCAGATCATGGAGCAGTATGAAAATCAGGAGAATACAGGGCTGGGACTGAAATAT
-TCCCGCTGCGCCTTATTTCCTGCATGGTTCTGGCTCACTGTCCTGGATACGCTCTATTAC
-ACAGGGATACGTCAGAACCAGTTATTACATATTCGGCTGAATGATGTTGATTTGAGAGAA
-GGGCAGATTCGGCTGATTACGGAGGGGTGTAAAAATCACAAAGAACACTATGTGCCGGTG
-ATCAGTTTTCTGCGTCCACGGCTGACCTGTTTAATGGAGAAAGCGCAGAGCGAAGGATTG
-AAAGGTAATGACCGCCTGTTCAATATTGCACTTTTTACCGGCAAAGATCCCGCCATTGGC
-GATGACATGGATTCTCCTCAGGTAAGAGCATTCTTCCGTCGTCTGTCCAAGGAGTGTCAG
-TTTGCGATCAGTCCTCATCGTTTCAGACACACGCTGGCCACGGAGATGATGAAAATGCCG
-GAACAGAATCTGCATATGGCGCAAAGTGTGCTGGGTCATTCAAACATGAAATCCACGCTG
-GAGTATGTGGAGAATGATATTGCAGTGATGGGGAGGGCTCTGGAAGCGCAGTTTATGCAG
-ATTAAGGCAGCACATGCCCGAAGCATTTACAGTGGGTTGACAAAGAATAGATAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fna b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fna
deleted file mode 100644
index 50088317..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fna
+++ /dev/null
@@ -1,184 +0,0 @@
->this_is_genome_1
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATTATCGGCTCGTCC
-GGTTCCGGTAAAAGCACTTTTTTGCGCTGCATTAACTTCCTCGAAAAATCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAACCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCG
-CACGTGATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCAATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAAACGCTA
-GAGGACGCGCCTCTCAGAGAGCGCGCTCTCTCAGAGAGGCGCGCGCCTCTTTCGCAGAGA
-CCNNCGCTCATGAGCGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGG
-TTCCGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCG
-CCAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGC
-CTTCGCCGACGGGCAGACTGTGGTCGTGCCGTCAGGATGGGTGTGTGAAAATATCAATGC
-GGCGATAACGATTCCGGCGGGAAAAACGCTGCGGATACAGGGCGCGGTGCGTGGGAATGG
-CCGGGGACGGTTTATTTTGCTGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCT
-GCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAG
-CGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAA
-TCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATT
-TCATAACCAAATGGACGGCGCGCGGATTACGCATAGTCGCTTTAGCGATTTGCAGGGGGA
-CGCCATTGAGTGGAATGTCGCGATTCATGACCGCGACATCCTGATTTCCGATCATGTCAT
-CGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGG
-TAGCGCCTATGACAATAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAA
-TATTACCGGATCTGATTGCCGACAACTGGTACACGTAGAAAATGGCAAACATTTCGTCAT
-TCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAA
-CGCAACGATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAA
-TAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCA
-AAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGG
-CATTCAAATTTCCTCCGGTAACGCCCCCTCATTTGTTGCCATCACCAATGTACGGATGAC
-GCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTTTGCGTAATATCAACGT
-GATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTTGATTTGCGTAAAGATGT
-CCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCAT
-CAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGT
-CGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACACTCGCGCATAGAGAGCTC
-TCAGAGGAGCGCGCGCGCTATAGCGCGC
->this_is_genome_2
-CGCGATAATATAGCGCGCGCTCATAGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACC
-ATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGT
-CGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAA
-CGTATGCGCGAGCGCATTCAGGCGCTGGAAGATATTCTTGATGCAGAGCATCCGAACTGG
-AGAGAGCGCTAACGCCATATTATAGCGCGCCTCATAAGAGCGGCCTATAGCGCGCTANNN
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG
-TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAGCCAGAGATTCGCGCGTTCAGAGAGGAGCTCTCTCATAGA
-CGCGCGCATATGCGCTCTAGAGAGGCGCGCCTAATGGCGCGCTATGATGAAAGCGCTACT
-GTGGCTGGTTGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGA
-TAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAA
-AGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGG
-TCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACC
-GCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCTTGGCATGCGGGCGTCAGTTTCTG
-GCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTG
-GCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATT
-GATCCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGC
-CCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGA
-GCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGC
-TGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTA
-TGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTT
-CCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGAT
-TGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAAAGCGCTCTCAGAGAGAGCGC
-TCTGCAGATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGA
-AGATCTGGCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGG
-CTATCTGCACATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTA
-TCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTA
-CGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCG
-CTACTCCTCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTCATCAATAAAGG
-CCTGGCCTACGTTGATGAGCTGACGCCGGAGCAGATCCGCGAATACCGTGGTACGCTGAC
-CGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTGGAAGAAAACCTCGCGCTATT
-TGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGA
-CATGGCGTCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGA
-GCATCATCAGACCGGCACGAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCAT
-CAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGACAACCG
-TCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGA
-ATTCTCGCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGT
-GACCGACAAACACGTCGAAGGTTGGGATGATCCGCGTATGCCGACTATTTCCGGTCTGCG
-CCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAA
-GCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGA
-AAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAACTACCC
-GCAGGGCGAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAG
-CCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCGGATTTCCGCGAAGAAGC
-GAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGT
-CATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTAC
-CTATGATGCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAAT
-CCACTGGGTTAGCGTAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTT
-CAGCGTGCCGAACCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATT
-AGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGGAAAGCTTT
-CCAGTTTGAACGTGAAGGTTACTTCTGCCTTGACAGCCGCTATGCAACGGCCGATAAGCT
-GGTCTTTAACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAATAA
->this_is_genome_3
-ACGCGCTATAGGGCTCTCAGAGAGTCTCAGTGTTTATTGGCATCGTTAGCCTGTTTCCTG
-AAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGC
-TGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACG
-ACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCA
-TTCATGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGG
-GACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAACTCATTCTGG
-TGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGGCCGAAATTGACGAAGAAT
-GGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACT
-CCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGT
-TTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGG
-AAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAAC
-AGTCACTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTG
-AAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAAC
-ATGATGGGATGGCATAGCGAGATCGCGCATAGCGCGCGGCGAGATCCGCGAGACATGAAT
-AATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCAT
-CATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGT
-ATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGT
-CGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATG
-GCGGTTCGCTTCTTTATGGCTGGTTATCGACTCGAAGGTTGAACGCCTCTAGAGCGCTAG
-AGGCGCGCGCGATATACGCGGCGCGAGACATGTCTACGCTTCTCTATTTGCACGGATTCA
-ACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATC
-CGCATGTTGAGATGATCGTCCCTCAACTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGC
-TGGAATCTCTCGTACTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGG
-GTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATC
-CCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACA
-CCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTG
-ACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGG
-ATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGGGGTA
-ATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGC
-ACAGTTGCTGACCGGATATACGCGCGCGCGCTATATAGCGCGCGCGGCGATATAGCGCAT
-GAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAAATCATCAGAAATACGCCGTT
-CTGGCCTGATGTGGACCTGTCGGAGTTTCGCAGCATGATGCGCACTGATGGCACGGTGAC
-GCAGCCGCGTTTAAAGCAGGTTGCGCTGTCGGCAATTTCGGAGGTCAACGCAGAGCTGTA
-TGAGTTTCGCAGACGCCAGCAGATGCTGGGGTATGCCTCGCTGGCAGAAGTCCCGGCGGA
-ACAACTGGACGGCAAAAGCGAGCGCATTCAGCACTATTTCAACGCGGTTTACTGCTGGGC
-ACGCGCCATGCTCAACGAACGTTACCAGGACTATGACGCCACGGCATCCGGTGTGAAGCG
-GGGCGAAGAACTGGCAGAAGCCAGCGGTGATTTGTGGCGTGACGCCCGCTGGGCCATCAG
-CCGGGTGCAGGATGCGCCGCACTGCACAGTGGAGCTTATCTGA
->this_is_genome_4
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGACTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTC
-TCTTACACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCC
-GCCTCAACCTCTATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGTTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATTGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATAGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATC
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATTATGACTAAACTGGGCGTC
-GATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATAGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGACGTT
-ATCAAACCGTTGATGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCACACTGTTTTTACCCCGTCTACTGGGCATCATGTAAACGCTCATAGGC
-GGCGCGCGCGCTCTCAGGAATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGA
-GGTCATCAAAAATACGCCGTTCTGGCCTGATGTGAACCTGTCGGAATTTCGCAGTGTGAT
-GCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTC
-TGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGAC
-ACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCA
-CAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGC
-CACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCG
-TGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCACCGCACTGTACGGTGGAGCTTAT
-CTGACGCTCATAGGCGCGCGCTCATAGCGCGATGGAAACAAATATTACCTGGCAACAATT
-GATAGATGAATATTTCTTCGCAAAACCTCTGCGCTCAGCATCTGAATGGAGTTACACCAA
-AGTCTTCAAATCATTTGTACATTATATGGGGCCGTTAAGCTGCCCTAATGATGTGACATA
-TCACAAAGTGCTTGCCTGGCGCCGTTTTCTTTTAAAAGAGAAAAAGCTGTCCGGACGTAC
-CTGGAATAACAAGGTGGCGCATATGCGGGCCATCTTTAACTACGGAATACAGCGAGGGTT
-ACTGCACTATGACGAAAATCCGTTTAACAATTCGGTAGTTAAACCGGACAAGAAGAGAAA
-GAAAACGCTCACTCAGGCACAGATTGAGTATGCCTATCAGATCATGGAGCAGTATGAAAA
-TCAGGAGAATACAGGGCTGGGACTGAAATATTCCCGCTGCGCCTTATTTCCTGCATGGTT
-CTGGCTCACTGTCCTGGATACGCTCTATTACACAGGGATACGTCAGAACCAGTTATTACA
-TATTCGGCTGAATGATGTTGATTTGAGAGAAGGGCAGATTCGGCTGATTACGGAGGGGTG
-TAAAAATCACAAAGAACACTATGTGCCGGTGATCAGTTTTCTGCGTCCACGGCTGACCTG
-TTTAATGGAGAAAGCGCAGAGCGAAGGATTGAAAGGTAATGACCGCCTGTTCAATATTGC
-ACTTTTTACCGGCAAAGATCCCGCCATTGGCGATGACATGGATTCTCCTCAGGTAAGAGC
-ATTCTTCCGTCGTCTGTCCAAGGAGTGTCAGTTTGCGATCAGTCCTCATCGTTTCAGACA
-CACGCTGGCCACGGAGATGATGAAAATGCCGGAACAGAATCTGCATATGGCGCAAAGTGT
-GCTGGGTCATTCAAACATGAAATCCACGCTGGAGTATGTGGAGAATGATATTGCAGTGAT
-GGGGAGGGCTCTGGAAGCGCAGTTTATGCAGATTAAGGCAGCACATGCCCGAAGCATTTA
-CAGTGGGTTGACAAAGAATAGATAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fsa b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fsa
deleted file mode 100644
index cca31356..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fsa
+++ /dev/null
@@ -1,184 +0,0 @@
->this_is_genome_1 [gcode=11] [organism=Genus species] [strain=strain]
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATTATCGGCTCGTCC
-GGTTCCGGTAAAAGCACTTTTTTGCGCTGCATTAACTTCCTCGAAAAATCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAACCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCG
-CACGTGATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCAATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAAACGCTA
-GAGGACGCGCCTCTCAGAGAGCGCGCTCTCTCAGAGAGGCGCGCGCCTCTTTCGCAGAGA
-CCNNCGCTCATGAGCGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGG
-TTCCGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCG
-CCAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGC
-CTTCGCCGACGGGCAGACTGTGGTCGTGCCGTCAGGATGGGTGTGTGAAAATATCAATGC
-GGCGATAACGATTCCGGCGGGAAAAACGCTGCGGATACAGGGCGCGGTGCGTGGGAATGG
-CCGGGGACGGTTTATTTTGCTGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCT
-GCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAG
-CGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAA
-TCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATT
-TCATAACCAAATGGACGGCGCGCGGATTACGCATAGTCGCTTTAGCGATTTGCAGGGGGA
-CGCCATTGAGTGGAATGTCGCGATTCATGACCGCGACATCCTGATTTCCGATCATGTCAT
-CGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGG
-TAGCGCCTATGACAATAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAA
-TATTACCGGATCTGATTGCCGACAACTGGTACACGTAGAAAATGGCAAACATTTCGTCAT
-TCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAA
-CGCAACGATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAA
-TAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCA
-AAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGG
-CATTCAAATTTCCTCCGGTAACGCCCCCTCATTTGTTGCCATCACCAATGTACGGATGAC
-GCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTTTGCGTAATATCAACGT
-GATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTTGATTTGCGTAAAGATGT
-CCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCAT
-CAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGT
-CGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACACTCGCGCATAGAGAGCTC
-TCAGAGGAGCGCGCGCGCTATAGCGCGC
->this_is_genome_2 [gcode=11] [organism=Genus species] [strain=strain]
-CGCGATAATATAGCGCGCGCTCATAGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACC
-ATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGT
-CGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAA
-CGTATGCGCGAGCGCATTCAGGCGCTGGAAGATATTCTTGATGCAGAGCATCCGAACTGG
-AGAGAGCGCTAACGCCATATTATAGCGCGCCTCATAAGAGCGGCCTATAGCGCGCTANNN
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG
-TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAGCCAGAGATTCGCGCGTTCAGAGAGGAGCTCTCTCATAGA
-CGCGCGCATATGCGCTCTAGAGAGGCGCGCCTAATGGCGCGCTATGATGAAAGCGCTACT
-GTGGCTGGTTGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGA
-TAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAA
-AGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGG
-TCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACC
-GCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCTTGGCATGCGGGCGTCAGTTTCTG
-GCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTG
-GCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATT
-GATCCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGC
-CCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGA
-GCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGC
-TGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTA
-TGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTT
-CCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGAT
-TGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAAAGCGCTCTCAGAGAGAGCGC
-TCTGCAGATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGA
-AGATCTGGCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGG
-CTATCTGCACATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTA
-TCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTA
-CGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCG
-CTACTCCTCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTCATCAATAAAGG
-CCTGGCCTACGTTGATGAGCTGACGCCGGAGCAGATCCGCGAATACCGTGGTACGCTGAC
-CGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTGGAAGAAAACCTCGCGCTATT
-TGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGA
-CATGGCGTCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGA
-GCATCATCAGACCGGCACGAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCAT
-CAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGACAACCG
-TCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGA
-ATTCTCGCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGT
-GACCGACAAACACGTCGAAGGTTGGGATGATCCGCGTATGCCGACTATTTCCGGTCTGCG
-CCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAA
-GCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGA
-AAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAACTACCC
-GCAGGGCGAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAG
-CCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCGGATTTCCGCGAAGAAGC
-GAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGT
-CATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTAC
-CTATGATGCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAAT
-CCACTGGGTTAGCGTAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTT
-CAGCGTGCCGAACCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATT
-AGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGGAAAGCTTT
-CCAGTTTGAACGTGAAGGTTACTTCTGCCTTGACAGCCGCTATGCAACGGCCGATAAGCT
-GGTCTTTAACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAATAA
->this_is_genome_3 [gcode=11] [organism=Genus species] [strain=strain]
-ACGCGCTATAGGGCTCTCAGAGAGTCTCAGTGTTTATTGGCATCGTTAGCCTGTTTCCTG
-AAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGC
-TGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACG
-ACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCA
-TTCATGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGG
-GACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAACTCATTCTGG
-TGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGGCCGAAATTGACGAAGAAT
-GGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACT
-CCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGT
-TTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGG
-AAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAAC
-AGTCACTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTG
-AAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAAC
-ATGATGGGATGGCATAGCGAGATCGCGCATAGCGCGCGGCGAGATCCGCGAGACATGAAT
-AATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCAT
-CATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGT
-ATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGT
-CGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATG
-GCGGTTCGCTTCTTTATGGCTGGTTATCGACTCGAAGGTTGAACGCCTCTAGAGCGCTAG
-AGGCGCGCGCGATATACGCGGCGCGAGACATGTCTACGCTTCTCTATTTGCACGGATTCA
-ACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATC
-CGCATGTTGAGATGATCGTCCCTCAACTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGC
-TGGAATCTCTCGTACTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGG
-GTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATC
-CCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACA
-CCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTG
-ACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGG
-ATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGGGGTA
-ATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGC
-ACAGTTGCTGACCGGATATACGCGCGCGCGCTATATAGCGCGCGCGGCGATATAGCGCAT
-GAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAAATCATCAGAAATACGCCGTT
-CTGGCCTGATGTGGACCTGTCGGAGTTTCGCAGCATGATGCGCACTGATGGCACGGTGAC
-GCAGCCGCGTTTAAAGCAGGTTGCGCTGTCGGCAATTTCGGAGGTCAACGCAGAGCTGTA
-TGAGTTTCGCAGACGCCAGCAGATGCTGGGGTATGCCTCGCTGGCAGAAGTCCCGGCGGA
-ACAACTGGACGGCAAAAGCGAGCGCATTCAGCACTATTTCAACGCGGTTTACTGCTGGGC
-ACGCGCCATGCTCAACGAACGTTACCAGGACTATGACGCCACGGCATCCGGTGTGAAGCG
-GGGCGAAGAACTGGCAGAAGCCAGCGGTGATTTGTGGCGTGACGCCCGCTGGGCCATCAG
-CCGGGTGCAGGATGCGCCGCACTGCACAGTGGAGCTTATCTGA
->this_is_genome_4 [gcode=11] [organism=Genus species] [strain=strain]
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGACTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTC
-TCTTACACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCC
-GCCTCAACCTCTATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGTTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATTGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATAGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATC
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATTATGACTAAACTGGGCGTC
-GATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATAGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGACGTT
-ATCAAACCGTTGATGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCACACTGTTTTTACCCCGTCTACTGGGCATCATGTAAACGCTCATAGGC
-GGCGCGCGCGCTCTCAGGAATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGA
-GGTCATCAAAAATACGCCGTTCTGGCCTGATGTGAACCTGTCGGAATTTCGCAGTGTGAT
-GCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTC
-TGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGAC
-ACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCA
-CAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGC
-CACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCG
-TGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCACCGCACTGTACGGTGGAGCTTAT
-CTGACGCTCATAGGCGCGCGCTCATAGCGCGATGGAAACAAATATTACCTGGCAACAATT
-GATAGATGAATATTTCTTCGCAAAACCTCTGCGCTCAGCATCTGAATGGAGTTACACCAA
-AGTCTTCAAATCATTTGTACATTATATGGGGCCGTTAAGCTGCCCTAATGATGTGACATA
-TCACAAAGTGCTTGCCTGGCGCCGTTTTCTTTTAAAAGAGAAAAAGCTGTCCGGACGTAC
-CTGGAATAACAAGGTGGCGCATATGCGGGCCATCTTTAACTACGGAATACAGCGAGGGTT
-ACTGCACTATGACGAAAATCCGTTTAACAATTCGGTAGTTAAACCGGACAAGAAGAGAAA
-GAAAACGCTCACTCAGGCACAGATTGAGTATGCCTATCAGATCATGGAGCAGTATGAAAA
-TCAGGAGAATACAGGGCTGGGACTGAAATATTCCCGCTGCGCCTTATTTCCTGCATGGTT
-CTGGCTCACTGTCCTGGATACGCTCTATTACACAGGGATACGTCAGAACCAGTTATTACA
-TATTCGGCTGAATGATGTTGATTTGAGAGAAGGGCAGATTCGGCTGATTACGGAGGGGTG
-TAAAAATCACAAAGAACACTATGTGCCGGTGATCAGTTTTCTGCGTCCACGGCTGACCTG
-TTTAATGGAGAAAGCGCAGAGCGAAGGATTGAAAGGTAATGACCGCCTGTTCAATATTGC
-ACTTTTTACCGGCAAAGATCCCGCCATTGGCGATGACATGGATTCTCCTCAGGTAAGAGC
-ATTCTTCCGTCGTCTGTCCAAGGAGTGTCAGTTTGCGATCAGTCCTCATCGTTTCAGACA
-CACGCTGGCCACGGAGATGATGAAAATGCCGGAACAGAATCTGCATATGGCGCAAAGTGT
-GCTGGGTCATTCAAACATGAAATCCACGCTGGAGTATGTGGAGAATGATATTGCAGTGAT
-GGGGAGGGCTCTGGAAGCGCAGTTTATGCAGATTAAGGCAGCACATGCCCGAAGCATTTA
-CAGTGGGTTGACAAAGAATAGATAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gbk b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gbk
deleted file mode 100644
index 6150ab31..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gbk
+++ /dev/null
@@ -1,415 +0,0 @@
-LOCUS this_is_genome_1 2308 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..2308
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 1..774
- /gene="hisP"
- /locus_tag="OHLPOIIB_00001"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P02915"
- /codon_start=1
- /transl_table=11
- /product="Histidine transport ATP-binding protein HisP"
- /translation="MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGK
- STFLRCINFLEKSSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
- LWNHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR
- VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
- SSHVIFLHQGKIEEEGNPEQVFGNPQSPRLQQFLKGSLK"
- CDS 857..2260
- /locus_tag="OHLPOIIB_00002"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRQTVDIKDYP
- ADDGIASFKQAFADGQTVVVPSGWVCENINAAITIPAGKTLRIQGAVRGNGRGRFILL
- DGCQVVGEQGGSLHNVTLDVRGSDCVIKGVTMSGFGPVAQIFIGGKEPQVMRNLIIDD
- ITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERI
- DCTNGKINWGIGIGLAGSAYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIR
- NVKAKNITPDFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIP
- QNFKLNAIRLDNRQVAYKLRGIQISSGNAPSFVAITNVRMTRATLELHNQPQHLFLRN
- INVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDIDRINH
- QTVNVEAVNFSLPKRGG"
-ORIGIN
- 1 atgtcagaaa ataaattaca cgttatcgat ttgcacaaac gctacggcgg tcatgaagtg
- 61 ctgaaagggg tatcgctgca ggcccgcgcc ggagatgtga ttagcattat cggctcgtcc
- 121 ggttccggta aaagcacttt tttgcgctgc attaacttcc tcgaaaaatc gagcgaaggc
- 181 gcgattatcg tgaacggtca gaacattaat ctggtgcgcg acaaagacgg gcagctcaaa
- 241 gtggcggata aaaatcagct acgcttgttg cgtacccgcc tgacgatggt gtttcagcac
- 301 tttaacctct ggaaccacat gacggtgctg gaaaatgtga tggaagcgcc gattcaggta
- 361 ctgggattaa gcaagcacga cgcgcgcgag cgggcgttga aatatctggc gaaggtgggg
- 421 attgatgagc gcgctcaggg caaatatccc gtccatctct ccggcggcca acagcagcgc
- 481 gtttctattg cgcgcgcgct ggcgatggaa cctgacgttt tactgttcga tgaacccaca
- 541 tcggcgctcg atcctgaact ggtcggcgaa gtgttgcgca tcatgcaaca actggcggaa
- 601 gaaggcaaaa cgatggtggt ggtcacgcat gaaatgggct tcgcccgcca tgtctcttcg
- 661 cacgtgattt ttctgcatca ggggaaaatt gaagaagagg gcaatccgga gcaggtgttc
- 721 ggcaatccgc aaagcccgcg tttacagcaa ttcctgaaag gctcgctgaa ataaacgcta
- 781 gaggacgcgc ctctcagaga gcgcgctctc tcagagaggc gcgcgcctct ttcgcagaga
- 841 ccnncgctca tgagcgatgc ccgcgactaa attctcccga cgtaccctcc tgacggcagg
- 901 ttccgcgctt gctgttcttc cttttctgcg cgccttgccg gtacaggcgc gtgaacctcg
- 961 ccagaccgtc gatattaagg attatccggc ggatgacggt atcgcctcgt tcaaacaggc
- 1021 cttcgccgac gggcagactg tggtcgtgcc gtcaggatgg gtgtgtgaaa atatcaatgc
- 1081 ggcgataacg attccggcgg gaaaaacgct gcggatacag ggcgcggtgc gtgggaatgg
- 1141 ccggggacgg tttattttgc tggacgggtg tcaggtggtg ggggagcagg gcggcagtct
- 1201 gcacaatgtg acgctggatg ttcgcgggtc ggactgtgtg attaaaggcg tgacgatgag
- 1261 cggctttggc cccgtcgcgc aaattttcat cggcggtaag gaaccgcagg tgatgcgtaa
- 1321 tctcattatc gatgacatca ccgttaccca cgccaactac gccattctcc gccagggatt
- 1381 tcataaccaa atggacggcg cgcggattac gcatagtcgc tttagcgatt tgcaggggga
- 1441 cgccattgag tggaatgtcg cgattcatga ccgcgacatc ctgatttccg atcatgtcat
- 1501 cgaacgcatt gattgtacca atggcaaaat caactggggg atcggcatcg ggctggcggg
- 1561 tagcgcctat gacaatagtt atcctgaaga ccaggcagta aaaaactttg tggtggccaa
- 1621 tattaccgga tctgattgcc gacaactggt acacgtagaa aatggcaaac atttcgtcat
- 1681 tcgcaatgtc aaagccaaaa acatcacgcc cgatttcagt aaaaatgcgg gtattgataa
- 1741 cgcaacgatc gccatttatg gctgtgataa tttcgtcatt gataatattg atatgacgaa
- 1801 tagtgccggg atgctcatcg gctatggcgt cgttaaagga aaatacctgt caattccgca
- 1861 aaactttaaa ttaaacgcta ttcggttgga taatcgccag gttgcttata aattacgcgg
- 1921 cattcaaatt tcctccggta acgccccctc atttgttgcc atcaccaatg tacggatgac
- 1981 gcgtgctacg ctggaactgc ataatcaacc gcagcacctc tttttgcgta atatcaacgt
- 2041 gatgcaaact tcagcgattg gcccggcgtt aaaaatgcat tttgatttgc gtaaagatgt
- 2101 ccgtggtcaa tttatggccc gccaggacac gctgctttcc ctcgctaatg ttcatgccat
- 2161 caatgaaaac gggcagagtt ccgtggatat cgacaggatt aatcaccaaa ccgtgaatgt
- 2221 cgaagcagtg aatttttcgc tgccgaagcg gggagggtaa cactcgcgca tagagagctc
- 2281 tcagaggagc gcgcgcgcta tagcgcgc
-//
-LOCUS this_is_genome_2 3295 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..3295
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 28..252
- /gene="pspB"
- /locus_tag="OHLPOIIB_00003"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P0AFM9"
- /codon_start=1
- /transl_table=11
- /product="Phage shock protein B"
- /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLL
- QLTDDAQRMRERIQALEDILDAEHPNWRER"
- CDS 301..681
- /gene="hpcD"
- /locus_tag="OHLPOIIB_00004"
- /EC_number="5.3.3.10"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:Q05354"
- /codon_start=1
- /transl_table=11
- /product="5-carboxymethyl-2-hydroxymuconate
- Delta-isomerase"
- /translation="MPHFIAECTENIREQADLPSLFSKVNEALAATGIFPIGGIRSRA
- HWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLA
- LSFEIAELHPTLNYKQNNVHALFK"
- CDS 764..1597
- /gene="amiD"
- /locus_tag="OHLPOIIB_00005"
- /EC_number="3.5.1.28"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P75820"
- /codon_start=1
- /transl_table=11
- /product="N-acetylmuramoyl-L-alanine amidase AmiD"
- /translation="MMKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPR
- IKVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAG
- VSFWRGATRLNDTSIGIELENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIK
- PQNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTAT
- VLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQ
- D"
- CDS 1628..3295
- /gene="glnS"
- /locus_tag="OHLPOIIB_00006"
- /EC_number="6.1.1.18"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P00962"
- /codon_start=1
- /transl_table=11
- /product="Glutamine--tRNA ligase"
- /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
- AKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSD
- YFDQLHAYAVELINKGLAYVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEK
- MRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGTKWCIYPMYDFTHCI
- SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
- LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE
- DLNENAPRAMAVIDPVKLVIENYPQGESEMVTMPNHPNKPEMGSREVPFSGEIWIDRA
- DFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPAD
- GRKVKGVIHWVSVAHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQGYGEPS
- LKAAVAGKAFQFEREGYFCLDSRYATADKLVFNRTVGLRDTWAKAGE"
-ORIGIN
- 1 cgcgataata tagcgcgcgc tcatagcatg agcgcgctat ttctggccat cccgttaacc
- 61 atttttgtgt tgtttgtgtt accgatttgg ctgtggctgc attacagcaa ccgcgccggt
- 121 cggggagaac tgtcgcaaag cgagcagcaa cgcttactgc aactcacaga cgacgcgcaa
- 181 cgtatgcgcg agcgcattca ggcgctggaa gatattcttg atgcagagca tccgaactgg
- 241 agagagcgct aacgccatat tatagcgcgc ctcataagag cggcctatag cgcgctannn
- 301 atgccgcact ttattgctga atgtactgaa aatattcgcg agcaggctga tttaccaagc
- 361 ctgttcagca aggtaaacga ggcgctggcc gccaccggga ttttccccat cggcggtatc
- 421 cgcagtcgcg cccactggct ggatacctgg cagatggctg acggtaagca tgattacgcg
- 481 tttgtgcata tgacgctgaa aatcggcgcc gggcgcagcc tggagagccg tcaggaagtc
- 541 ggcgaaatgc tgtttgggct gattaaagcc cacttcgccg acctgatgga gaaccgctat
- 601 ctggcgctgt cgtttgagat tgccgagtta catccaacgc tcaattacaa acaaaacaac
- 661 gtacacgcgt tatttaaata gccagagatt cgcgcgttca gagaggagct ctctcataga
- 721 cgcgcgcata tgcgctctag agaggcgcgc ctaatggcgc gctatgatga aagcgctact
- 781 gtggctggtt ggtctcgcgt tgctgttaac aggctgcgcg agcgaaaaag gaattatcga
- 841 taaagaggga tatcagcttg atacccgaca tcgggcgcag gcggcctatc cgcgcattaa
- 901 agtcctggtg attcactata cggcggaaaa ctttgacgtt tcgctggcga cgttaacggg
- 961 tcgcaacgtc agttcgcatt acctgattcc cgcaaccccg ccattatatg gcggtaaacc
- 1021 gcgcatctgg caactggtgc cggaacagga tcaggcttgg catgcgggcg tcagtttctg
- 1081 gcgaggcgcc acgcgtctca atgatacgtc tattggcatt gagctggaaa atcgcggctg
- 1141 gcgaatgtcc ggcggggtga aatctttcgc gccgtttgaa tccgcgcaaa ttcaggcatt
- 1201 gatcccgtta gcgaaggaca ttatcgcgcg ctatgacatc aaaccgcaga atgtggtggc
- 1261 ccatgcggat atcgcgccgc agcgtaaaga cgatcccggc ccgcgcttcc cgtggcgcga
- 1321 gctggcggca caggggattg gcgcctggcc tgacgcccag cgtgtggcgt tttatctggc
- 1381 tggacgcgcg ccgtatacgc cagtcgatac cgcaacggtg cttgcgttac tctcgcgcta
- 1441 tggctatgaa gtcaaagccg atatgacggc gcgcgagcaa cagcgggtga ttatggcgtt
- 1501 ccagatgcac ttccgtccgg cgcaatggaa cggtatcgca gatgccgaaa cgcaggcgat
- 1561 tgccgaagca ttactggaga agtacggcca ggattaacaa agcgctctca gagagagcgc
- 1621 tctgcagatg agtgaggctg aagcccgccc gactaacttt attcgtcaga ttattgatga
- 1681 agatctggcg agtggtaaac ataccactgt ccatacccgt tttccgccgg agccgaatgg
- 1741 ctatctgcac atcggccacg cgaaatctat ctgcctgaac tttggcatcg cgcaagatta
- 1801 tcagggccag tgcaacctgc gtttcgatga caccaacccg gtaaaagaag atatcgagta
- 1861 cgttgattcg atcaaaaacg acgtcgagtg gttaggcttt cactggtctg gcgatattcg
- 1921 ctactcctcc gattactttg accaactgca cgcctatgcg gtcgagctca tcaataaagg
- 1981 cctggcctac gttgatgagc tgacgccgga gcagatccgc gaataccgtg gtacgctgac
- 2041 cgcgccgggt aaaaacagcc cgttccgcga tcgcagcgtg gaagaaaacc tcgcgctatt
- 2101 tgaaaaaatg cgtaccggcg gttttgaaga gggtaaagcc tgtctgcgcg ctaaaatcga
- 2161 catggcgtcg ccgtttatcg tgatgcgcga tccggtgctg tatcgcatta aattcgccga
- 2221 gcatcatcag accggcacga agtggtgcat ctatccgatg tacgacttta ctcactgcat
- 2281 cagcgatgcg ctggaaggca ttactcattc tctgtgtacg ctggagttcc aggacaaccg
- 2341 tcgtctgtac gactgggtgc tggacaacat caccattccg gttcacccgc gccagtacga
- 2401 attctcgcgc ctgaatctgg aatacaccgt gatgtccaag cgtaagctga acctgctggt
- 2461 gaccgacaaa cacgtcgaag gttgggatga tccgcgtatg ccgactattt ccggtctgcg
- 2521 ccgtcgcggc tataccgcgg cttctattcg tgagttctgc aaacgcatcg gcgtcaccaa
- 2581 gcaggacaac actattgaga tggcgtcgct ggaatcctgc attcgcgaag atctgaacga
- 2641 aaacgcgccg cgcgcgatgg cggtaatcga tccggtaaaa ctggttatcg aaaactaccc
- 2701 gcagggcgag agcgaaatgg ttaccatgcc taaccatccg aataaaccgg agatgggcag
- 2761 ccgtgaagtg ccgtttagcg gtgagatctg gatcgatcgc gcggatttcc gcgaagaagc
- 2821 gaacaaacag tacaaacgtc tggtgatggg caaagaagtg cgtctgcgta atgcctacgt
- 2881 cattaaagcg gagcgcgtag agaaggatgc cgaagggaat atcaccacca tcttctgtac
- 2941 ctatgatgct gatacgctga gtaaagatcc ggctgacggg cgtaaagtga aaggcgtaat
- 3001 ccactgggtt agcgtagcac atgcgctgcc gattgaaatt cgtctctacg accgtctgtt
- 3061 cagcgtgccg aacccgggcg ccgcggagga cttcctgtct gttatcaacc ccgaatcatt
- 3121 agtgattaag caggggtatg gcgagccgtc gctgaaagcg gcggtagcag ggaaagcttt
- 3181 ccagtttgaa cgtgaaggtt acttctgcct tgacagccgc tatgcaacgg ccgataagct
- 3241 ggtctttaac cgcaccgtgg gcctgcgtga tacctgggcg aaagcgggcg aataa
-//
-LOCUS this_is_genome_3 2263 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..2263
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 30..797
- /gene="trmD"
- /locus_tag="OHLPOIIB_00007"
- /EC_number="2.1.1.228"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P0A873"
- /codon_start=1
- /transl_table=11
- /product="tRNA (guanine-N(1)-)-methyltransferase"
- /translation="MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHD
- RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
- ATNQKLILVCGRYEGVDERVIQAEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVL
- GHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
- RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
- CDS 862..1122
- /locus_tag="OHLPOIIB_00008"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLS
- AWEAGILTRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG"
- CDS 1170..1751
- /locus_tag="OHLPOIIB_00009"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYP
- ADAAELLESLVLEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
- LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA
- SCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC"
- CDS 1895..2263
- /locus_tag="OHLPOIIB_00010"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MMRTDGTVTQPRLKQVALSAISEVNAELYEFRRRQQMLGYASLA
- EVPAEQLDGKSERIQHYFNAVYCWARAMLNERYQDYDATASGVKRGEELAEASGDLWR
- DARWAISRVQDAPHCTVELI"
-ORIGIN
- 1 acgcgctata gggctctcag agagtctcag tgtttattgg catcgttagc ctgtttcctg
- 61 aaatgttccg cgcaattacc gattacgggg taactggccg ggcagtaaaa aaaggcctgc
- 121 tgaacatcca aagctggagt cctcgcgact tcgcgcatga ccggcaccgt accgtggacg
- 181 accgtcctta cggcggcgga ccggggatgt taatgatggt gcaacccttg cgggacgcca
- 241 ttcatgcagc aaaagccgcg gcaggtgaag gcgctaaagt gatttatctg tcgcctcagg
- 301 gacgcaagct tgatcaagcg ggcgttagcg agctggccac gaatcagaaa ctcattctgg
- 361 tgtgtggtcg ctacgaaggc gtagatgagc gcgtaattca ggccgaaatt gacgaagaat
- 421 ggtcaattgg cgattacgtt ctcagcggtg gcgaactacc ggcaatgacg ctgattgact
- 481 ccgtcgcccg gtttataccg ggggttctgg ggcatgaggc atcagcaatc gaagattcgt
- 541 ttgctgatgg gttgctggat tgtccgcact atacgcgccc tgaagtgtta gaggggatgg
- 601 aagtaccgcc agtattgctg tcgggaaacc atgctgagat acgtcgctgg cgtttgaaac
- 661 agtcactggg ccgaacctgg cttagaagac ctgaacttct ggaaaacctg gctctgactg
- 721 aagagcaagc aaggttgctg gcggagttca aaacagaaca cgcacaacag cagcataaac
- 781 atgatgggat ggcatagcga gatcgcgcat agcgcgcggc gagatccgcg agacatgaat
- 841 aatcattttg ggaaagggtt aatggccggg ttgcacgcgc catatgcata tagcgcgcat
- 901 catgcggtga atttctgttc tgagtataaa cgtggctttg tattgggttt tacacaccgt
- 961 atgttcgaaa agaccggcga tcgtcaactt agcgcgtggg aggccggaat tctgacgcgt
- 1021 cgctatggtc tggataaaga aatggtgatg gatttcttta aagagaatca ttccgggatg
- 1081 gcggttcgct tctttatggc tggttatcga ctcgaaggtt gaacgcctct agagcgctag
- 1141 aggcgcgcgc gatatacgcg gcgcgagaca tgtctacgct tctctatttg cacggattca
- 1201 acagttcccc tcgctcggca aaagcgtgcc agctaaaaaa ctggctggcg gagcgtcatc
- 1261 cgcatgttga gatgatcgtc cctcaactgc cgccgtatcc tgccgatgcg gcggagttgc
- 1321 tggaatctct cgtacttgag catggcggtg cgccattagg gctggtagga tcgtcgctgg
- 1381 gtggttatta cgccacctgg ctgtcgcaat gttttatgct gccggctgtg gtggtgaatc
- 1441 ccgccgtgcg gccctttgaa ttactgaccg actatctcgg tcagaacgag aacccctaca
- 1501 ccgggcagca atatgtgcta gagtctcgcc atatttatga tcttaaagtc atgcagattg
- 1561 acccgctgga agcgccggac ctgatctggc tactgcaaca gacgggcgat gaagtgctgg
- 1621 attaccgcca ggcggtggca tattacgcct cctgccgtca gacagtgacc gaggggggta
- 1681 atcacgcatt cacgggcttc gaagattatt tcaaccagat tgtcgatttt cttggactgc
- 1741 acagttgctg accggatata cgcgcgcgcg ctatatagcg cgcgcggcga tatagcgcat
- 1801 gaagtttgtt gcgccagaac aggcaccgga acaggcggaa atcatcagaa atacgccgtt
- 1861 ctggcctgat gtggacctgt cggagtttcg cagcatgatg cgcactgatg gcacggtgac
- 1921 gcagccgcgt ttaaagcagg ttgcgctgtc ggcaatttcg gaggtcaacg cagagctgta
- 1981 tgagtttcgc agacgccagc agatgctggg gtatgcctcg ctggcagaag tcccggcgga
- 2041 acaactggac ggcaaaagcg agcgcattca gcactatttc aacgcggttt actgctgggc
- 2101 acgcgccatg ctcaacgaac gttaccagga ctatgacgcc acggcatccg gtgtgaagcg
- 2161 gggcgaagaa ctggcagaag ccagcggtga tttgtggcgt gacgcccgct gggccatcag
- 2221 ccgggtgcag gatgcgccgc actgcacagt ggagcttatc tga
-//
-LOCUS this_is_genome_4 2845 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..2845
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 1..1308
- /gene="dctM"
- /locus_tag="OHLPOIIB_00011"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:O07838"
- /codon_start=1
- /transl_table=11
- /product="C4-dicarboxylate TRAP transporter large permease
- protein DctM"
- /translation="MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFD
- ISMFATAQKMFSSLDSFALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSY
- TNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPT
- TAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMAL
- KVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTIVFYRTLKIKDLPSIL
- LQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLII
- GAFMDIGPAILIFTPILLPIMTKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASV
- GKVKVEDVIKPLMPFYGAIIGVLLLITYIPEITLFLPRLLGIM"
- CDS 1340..1804
- /locus_tag="OHLPOIIB_00012"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MKFVAPEQAPEQAEVIKNTPFWPDVNLSEFRSVMRTDGTVTQPR
- LKQVVLTAISEVNAELYDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWAR
- AVLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCTVELI"
- CDS 1832..2845
- /gene="xerC"
- /locus_tag="OHLPOIIB_00013"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P39776"
- /codon_start=1
- /transl_table=11
- /product="Tyrosine recombinase XerC"
- /translation="METNITWQQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSC
- PNDVTYHKVLAWRRFLLKEKKLSGRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSV
- VKPDKKRKKTLTQAQIEYAYQIMEQYENQENTGLGLKYSRCALFPAWFWLTVLDTLYY
- TGIRQNQLLHIRLNDVDLREGQIRLITEGCKNHKEHYVPVISFLRPRLTCLMEKAQSE
- GLKGNDRLFNIALFTGKDPAIGDDMDSPQVRAFFRRLSKECQFAISPHRFRHTLATEM
- MKMPEQNLHMAQSVLGHSNMKSTLEYVENDIAVMGRALEAQFMQIKAAHARSIYSGLT
- KNR"
-ORIGIN
- 1 atgattgacc ctatttttgc gtcctgtacg ctaattgccg tctttgttgt tttactggcc
- 61 atgggcgcgc ctatcgggat ctgcatcgtt atcgcctctt tcagcaccat gatgctggta
- 121 ctgcctttcg atatttcgat gttcgccacc gcgcaaaaaa tgttctccag cctggacagt
- 181 tttgccttgc tggccgtgcc gttcttcgtt ttgtccgggg tgatcatgaa tagcggggga
- 241 attgccgccc gactggtcaa ttttgccaaa ctgtttactg gcaaactgcc cggctcgctc
- 301 tcttacacca acatcgtcgg caatatgatg ttcggtgcaa tttccggatc ggcgattgcc
- 361 gcctcaacct ctatcggcgg cgtgatggtg ccgatgagcg cgcgcgaagg ttacgatcgc
- 421 ggttttgcgg ccgcggtgaa tatcgcctcc gcgccgacgg gaatgttaat tccgcccacc
- 481 acggctttta tcctttatgc gctggcaagc gggggaacat cgattgccgc tctgttcgcc
- 541 ggcggtctgg tcgcgggagt gctgtggggc gttggctgta tgctggtcac gctggtggtc
- 601 gctaagcgtc gaaattatcg ggttttcttc accgtccaaa aaggcatggc gctaaaagtt
- 661 gccgttgagg ccattcccag cctgttactg atcgtgatta ttgtcggcgg cattgtgcag
- 721 gggattttca ccgccattga agcctccgcg attgccgtgg tgtatacgtt attgctgacg
- 781 atagtgtttt accgcacgct gaaaattaag gatttgcctt cgattttgct ccagacagtg
- 841 gtaatgaccg gggtcatcat gttcctgctg gcaacctctt cggcgatgtc cttctcgatg
- 901 tcgatcacca atattcctgc ggcgctgagc gatatgatcc tcggtatttc cgccaataaa
- 961 ctggttatcc tgttagtcat taccgtcttt ttgttgatta tcggcgcatt tatggatatc
- 1021 ggtccggcca ttctgatttt taccccgatt ctgctgccga ttatgactaa actgggcgtc
- 1081 gatccggtgc atttcggcat tatcatgatc tataacctgg cgataggcac cattacgccg
- 1141 ccagttggca gtggtttata tgtcggggcg agcgtcggta aggtcaaagt tgaggacgtt
- 1201 atcaaaccgt tgatgccttt ttacggcgcg attatcggcg ttctgttatt aattacctac
- 1261 attccggaaa tcacactgtt tttaccccgt ctactgggca tcatgtaaac gctcataggc
- 1321 ggcgcgcgcg ctctcaggaa tgaagtttgt tgcgccagaa caggcaccgg aacaggcgga
- 1381 ggtcatcaaa aatacgccgt tctggcctga tgtgaacctg tcggaatttc gcagtgtgat
- 1441 gcgcactgac ggcacggtga cgcagccgcg tttaaagcag gtcgtgctga cggcgatctc
- 1501 tgaggttaac gctgagctgt acgacttccg caaccgtcag cagatgctgg gctggcggac
- 1561 acttgctgag gttcccgcag aaatgctgga cggtaaaagc gagcgtatcc ggcactacca
- 1621 caacgctgtt ttttgctggg cgcgcgctgt gcttaatgag cgttatcagg actatgacgc
- 1681 cacggcgtca ggcgtgaagc gaggggagga gctggcggag gccagcggcg atctgtggcg
- 1741 tgatgcccgc tgggccatca gccgggtgca ggatgcaccg cactgtacgg tggagcttat
- 1801 ctgacgctca taggcgcgcg ctcatagcgc gatggaaaca aatattacct ggcaacaatt
- 1861 gatagatgaa tatttcttcg caaaacctct gcgctcagca tctgaatgga gttacaccaa
- 1921 agtcttcaaa tcatttgtac attatatggg gccgttaagc tgccctaatg atgtgacata
- 1981 tcacaaagtg cttgcctggc gccgttttct tttaaaagag aaaaagctgt ccggacgtac
- 2041 ctggaataac aaggtggcgc atatgcgggc catctttaac tacggaatac agcgagggtt
- 2101 actgcactat gacgaaaatc cgtttaacaa ttcggtagtt aaaccggaca agaagagaaa
- 2161 gaaaacgctc actcaggcac agattgagta tgcctatcag atcatggagc agtatgaaaa
- 2221 tcaggagaat acagggctgg gactgaaata ttcccgctgc gccttatttc ctgcatggtt
- 2281 ctggctcact gtcctggata cgctctatta cacagggata cgtcagaacc agttattaca
- 2341 tattcggctg aatgatgttg atttgagaga agggcagatt cggctgatta cggaggggtg
- 2401 taaaaatcac aaagaacact atgtgccggt gatcagtttt ctgcgtccac ggctgacctg
- 2461 tttaatggag aaagcgcaga gcgaaggatt gaaaggtaat gaccgcctgt tcaatattgc
- 2521 actttttacc ggcaaagatc ccgccattgg cgatgacatg gattctcctc aggtaagagc
- 2581 attcttccgt cgtctgtcca aggagtgtca gtttgcgatc agtcctcatc gtttcagaca
- 2641 cacgctggcc acggagatga tgaaaatgcc ggaacagaat ctgcatatgg cgcaaagtgt
- 2701 gctgggtcat tcaaacatga aatccacgct ggagtatgtg gagaatgata ttgcagtgat
- 2761 ggggagggct ctggaagcgc agtttatgca gattaaggca gcacatgccc gaagcattta
- 2821 cagtgggttg acaaagaata gataa
-//
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gff b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gff
deleted file mode 100644
index 401a3a93..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gff
+++ /dev/null
@@ -1,203 +0,0 @@
-##gff-version 3
-##sequence-region this_is_genome_1 1 2308
-##sequence-region this_is_genome_2 1 3295
-##sequence-region this_is_genome_3 1 2263
-##sequence-region this_is_genome_4 1 2845
-this_is_genome_1 Prodigal:2.6 CDS 1 774 . + 0 ID=OHLPOIIB_00001;Name=hisP;dbxref=COG:COG4598;gene=hisP;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P02915;locus_tag=OHLPOIIB_00001;product=Histidine transport ATP-binding protein HisP
-this_is_genome_1 Prodigal:2.6 CDS 857 2260 . + 0 ID=OHLPOIIB_00002;inference=ab initio prediction:Prodigal:2.6;locus_tag=OHLPOIIB_00002;product=hypothetical protein
-this_is_genome_2 Prodigal:2.6 CDS 28 252 . + 0 ID=OHLPOIIB_00003;Name=pspB;gene=pspB;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P0AFM9;locus_tag=OHLPOIIB_00003;product=Phage shock protein B
-this_is_genome_2 Prodigal:2.6 CDS 301 681 . + 0 ID=OHLPOIIB_00004;eC_number=5.3.3.10;Name=hpcD;gene=hpcD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:Q05354;locus_tag=OHLPOIIB_00004;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-this_is_genome_2 Prodigal:2.6 CDS 764 1597 . + 0 ID=OHLPOIIB_00005;eC_number=3.5.1.28;Name=amiD;dbxref=COG:COG3023;gene=amiD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P75820;locus_tag=OHLPOIIB_00005;product=N-acetylmuramoyl-L-alanine amidase AmiD
-this_is_genome_2 Prodigal:2.6 CDS 1628 3295 . + 0 ID=OHLPOIIB_00006;eC_number=6.1.1.18;Name=glnS;dbxref=COG:COG0008;gene=glnS;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P00962;locus_tag=OHLPOIIB_00006;product=Glutamine--tRNA ligase
-this_is_genome_3 Prodigal:2.6 CDS 30 797 . + 0 ID=OHLPOIIB_00007;eC_number=2.1.1.228;Name=trmD;dbxref=COG:COG0336;gene=trmD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P0A873;locus_tag=OHLPOIIB_00007;product=tRNA (guanine-N(1)-)-methyltransferase
-this_is_genome_3 Prodigal:2.6 CDS 862 1122 . + 0 ID=OHLPOIIB_00008;inference=ab initio prediction:Prodigal:2.6;locus_tag=OHLPOIIB_00008;product=hypothetical protein
-this_is_genome_3 Prodigal:2.6 CDS 1170 1751 . + 0 ID=OHLPOIIB_00009;inference=ab initio prediction:Prodigal:2.6;locus_tag=OHLPOIIB_00009;product=hypothetical protein
-this_is_genome_3 Prodigal:2.6 CDS 1895 2263 . + 0 ID=OHLPOIIB_00010;inference=ab initio prediction:Prodigal:2.6;locus_tag=OHLPOIIB_00010;product=hypothetical protein
-this_is_genome_4 Prodigal:2.6 CDS 1 1308 . + 0 ID=OHLPOIIB_00011;Name=dctM;dbxref=COG:COG1593;gene=dctM;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:O07838;locus_tag=OHLPOIIB_00011;product=C4-dicarboxylate TRAP transporter large permease protein DctM
-this_is_genome_4 Prodigal:2.6 CDS 1340 1804 . + 0 ID=OHLPOIIB_00012;inference=ab initio prediction:Prodigal:2.6;locus_tag=OHLPOIIB_00012;product=hypothetical protein
-this_is_genome_4 Prodigal:2.6 CDS 1832 2845 . + 0 ID=OHLPOIIB_00013;Name=xerC;dbxref=COG:COG4974;gene=xerC;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P39776;locus_tag=OHLPOIIB_00013;product=Tyrosine recombinase XerC
-##FASTA
->this_is_genome_1
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATTATCGGCTCGTCC
-GGTTCCGGTAAAAGCACTTTTTTGCGCTGCATTAACTTCCTCGAAAAATCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAACCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCG
-CACGTGATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCAATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAAACGCTA
-GAGGACGCGCCTCTCAGAGAGCGCGCTCTCTCAGAGAGGCGCGCGCCTCTTTCGCAGAGA
-CCNNCGCTCATGAGCGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGG
-TTCCGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCG
-CCAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGC
-CTTCGCCGACGGGCAGACTGTGGTCGTGCCGTCAGGATGGGTGTGTGAAAATATCAATGC
-GGCGATAACGATTCCGGCGGGAAAAACGCTGCGGATACAGGGCGCGGTGCGTGGGAATGG
-CCGGGGACGGTTTATTTTGCTGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCT
-GCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAG
-CGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAA
-TCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATT
-TCATAACCAAATGGACGGCGCGCGGATTACGCATAGTCGCTTTAGCGATTTGCAGGGGGA
-CGCCATTGAGTGGAATGTCGCGATTCATGACCGCGACATCCTGATTTCCGATCATGTCAT
-CGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGG
-TAGCGCCTATGACAATAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAA
-TATTACCGGATCTGATTGCCGACAACTGGTACACGTAGAAAATGGCAAACATTTCGTCAT
-TCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAA
-CGCAACGATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAA
-TAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCA
-AAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGG
-CATTCAAATTTCCTCCGGTAACGCCCCCTCATTTGTTGCCATCACCAATGTACGGATGAC
-GCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTTTGCGTAATATCAACGT
-GATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTTGATTTGCGTAAAGATGT
-CCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCAT
-CAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGT
-CGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACACTCGCGCATAGAGAGCTC
-TCAGAGGAGCGCGCGCGCTATAGCGCGC
->this_is_genome_2
-CGCGATAATATAGCGCGCGCTCATAGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACC
-ATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGT
-CGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAA
-CGTATGCGCGAGCGCATTCAGGCGCTGGAAGATATTCTTGATGCAGAGCATCCGAACTGG
-AGAGAGCGCTAACGCCATATTATAGCGCGCCTCATAAGAGCGGCCTATAGCGCGCTANNN
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG
-TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAGCCAGAGATTCGCGCGTTCAGAGAGGAGCTCTCTCATAGA
-CGCGCGCATATGCGCTCTAGAGAGGCGCGCCTAATGGCGCGCTATGATGAAAGCGCTACT
-GTGGCTGGTTGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGA
-TAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAA
-AGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGG
-TCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACC
-GCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCTTGGCATGCGGGCGTCAGTTTCTG
-GCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTG
-GCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATT
-GATCCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGC
-CCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGA
-GCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGC
-TGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTA
-TGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTT
-CCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGAT
-TGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAAAGCGCTCTCAGAGAGAGCGC
-TCTGCAGATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGA
-AGATCTGGCGAGTGGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGG
-CTATCTGCACATCGGCCACGCGAAATCTATCTGCCTGAACTTTGGCATCGCGCAAGATTA
-TCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAAGATATCGAGTA
-CGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCG
-CTACTCCTCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTCATCAATAAAGG
-CCTGGCCTACGTTGATGAGCTGACGCCGGAGCAGATCCGCGAATACCGTGGTACGCTGAC
-CGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTGGAAGAAAACCTCGCGCTATT
-TGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGA
-CATGGCGTCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGA
-GCATCATCAGACCGGCACGAAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCAT
-CAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGTACGCTGGAGTTCCAGGACAACCG
-TCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAGTACGA
-ATTCTCGCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGT
-GACCGACAAACACGTCGAAGGTTGGGATGATCCGCGTATGCCGACTATTTCCGGTCTGCG
-CCGTCGCGGCTATACCGCGGCTTCTATTCGTGAGTTCTGCAAACGCATCGGCGTCACCAA
-GCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAAGATCTGAACGA
-AAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAACTACCC
-GCAGGGCGAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAG
-CCGTGAAGTGCCGTTTAGCGGTGAGATCTGGATCGATCGCGCGGATTTCCGCGAAGAAGC
-GAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGTCTGCGTAATGCCTACGT
-CATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTAC
-CTATGATGCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAAT
-CCACTGGGTTAGCGTAGCACATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTT
-CAGCGTGCCGAACCCGGGCGCCGCGGAGGACTTCCTGTCTGTTATCAACCCCGAATCATT
-AGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGGAAAGCTTT
-CCAGTTTGAACGTGAAGGTTACTTCTGCCTTGACAGCCGCTATGCAACGGCCGATAAGCT
-GGTCTTTAACCGCACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAATAA
->this_is_genome_3
-ACGCGCTATAGGGCTCTCAGAGAGTCTCAGTGTTTATTGGCATCGTTAGCCTGTTTCCTG
-AAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGC
-TGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACG
-ACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCA
-TTCATGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGG
-GACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAACTCATTCTGG
-TGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGGCCGAAATTGACGAAGAAT
-GGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACT
-CCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGT
-TTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGG
-AAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAAC
-AGTCACTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTG
-AAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAAC
-ATGATGGGATGGCATAGCGAGATCGCGCATAGCGCGCGGCGAGATCCGCGAGACATGAAT
-AATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCAT
-CATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGT
-ATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGT
-CGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATG
-GCGGTTCGCTTCTTTATGGCTGGTTATCGACTCGAAGGTTGAACGCCTCTAGAGCGCTAG
-AGGCGCGCGCGATATACGCGGCGCGAGACATGTCTACGCTTCTCTATTTGCACGGATTCA
-ACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATC
-CGCATGTTGAGATGATCGTCCCTCAACTGCCGCCGTATCCTGCCGATGCGGCGGAGTTGC
-TGGAATCTCTCGTACTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGG
-GTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATC
-CCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACA
-CCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTG
-ACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGG
-ATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGGGGTA
-ATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGC
-ACAGTTGCTGACCGGATATACGCGCGCGCGCTATATAGCGCGCGCGGCGATATAGCGCAT
-GAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAAATCATCAGAAATACGCCGTT
-CTGGCCTGATGTGGACCTGTCGGAGTTTCGCAGCATGATGCGCACTGATGGCACGGTGAC
-GCAGCCGCGTTTAAAGCAGGTTGCGCTGTCGGCAATTTCGGAGGTCAACGCAGAGCTGTA
-TGAGTTTCGCAGACGCCAGCAGATGCTGGGGTATGCCTCGCTGGCAGAAGTCCCGGCGGA
-ACAACTGGACGGCAAAAGCGAGCGCATTCAGCACTATTTCAACGCGGTTTACTGCTGGGC
-ACGCGCCATGCTCAACGAACGTTACCAGGACTATGACGCCACGGCATCCGGTGTGAAGCG
-GGGCGAAGAACTGGCAGAAGCCAGCGGTGATTTGTGGCGTGACGCCCGCTGGGCCATCAG
-CCGGGTGCAGGATGCGCCGCACTGCACAGTGGAGCTTATCTGA
->this_is_genome_4
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGACTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTC
-TCTTACACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCC
-GCCTCAACCTCTATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGTTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATTGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATAGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATC
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATTATGACTAAACTGGGCGTC
-GATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATAGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGACGTT
-ATCAAACCGTTGATGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCACACTGTTTTTACCCCGTCTACTGGGCATCATGTAAACGCTCATAGGC
-GGCGCGCGCGCTCTCAGGAATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGA
-GGTCATCAAAAATACGCCGTTCTGGCCTGATGTGAACCTGTCGGAATTTCGCAGTGTGAT
-GCGCACTGACGGCACGGTGACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTC
-TGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGTCAGCAGATGCTGGGCTGGCGGAC
-ACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCACTACCA
-CAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGC
-CACGGCGTCAGGCGTGAAGCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCG
-TGATGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCACCGCACTGTACGGTGGAGCTTAT
-CTGACGCTCATAGGCGCGCGCTCATAGCGCGATGGAAACAAATATTACCTGGCAACAATT
-GATAGATGAATATTTCTTCGCAAAACCTCTGCGCTCAGCATCTGAATGGAGTTACACCAA
-AGTCTTCAAATCATTTGTACATTATATGGGGCCGTTAAGCTGCCCTAATGATGTGACATA
-TCACAAAGTGCTTGCCTGGCGCCGTTTTCTTTTAAAAGAGAAAAAGCTGTCCGGACGTAC
-CTGGAATAACAAGGTGGCGCATATGCGGGCCATCTTTAACTACGGAATACAGCGAGGGTT
-ACTGCACTATGACGAAAATCCGTTTAACAATTCGGTAGTTAAACCGGACAAGAAGAGAAA
-GAAAACGCTCACTCAGGCACAGATTGAGTATGCCTATCAGATCATGGAGCAGTATGAAAA
-TCAGGAGAATACAGGGCTGGGACTGAAATATTCCCGCTGCGCCTTATTTCCTGCATGGTT
-CTGGCTCACTGTCCTGGATACGCTCTATTACACAGGGATACGTCAGAACCAGTTATTACA
-TATTCGGCTGAATGATGTTGATTTGAGAGAAGGGCAGATTCGGCTGATTACGGAGGGGTG
-TAAAAATCACAAAGAACACTATGTGCCGGTGATCAGTTTTCTGCGTCCACGGCTGACCTG
-TTTAATGGAGAAAGCGCAGAGCGAAGGATTGAAAGGTAATGACCGCCTGTTCAATATTGC
-ACTTTTTACCGGCAAAGATCCCGCCATTGGCGATGACATGGATTCTCCTCAGGTAAGAGC
-ATTCTTCCGTCGTCTGTCCAAGGAGTGTCAGTTTGCGATCAGTCCTCATCGTTTCAGACA
-CACGCTGGCCACGGAGATGATGAAAATGCCGGAACAGAATCTGCATATGGCGCAAAGTGT
-GCTGGGTCATTCAAACATGAAATCCACGCTGGAGTATGTGGAGAATGATATTGCAGTGAT
-GGGGAGGGCTCTGGAAGCGCAGTTTATGCAGATTAAGGCAGCACATGCCCGAAGCATTTA
-CAGTGGGTTGACAAAGAATAGATAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.log b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.log
deleted file mode 100644
index 4e555a86..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.log
+++ /dev/null
@@ -1,119 +0,0 @@
-[13:18:45] This is prokka 1.14-dev
-[13:18:45] Written by Torsten Seemann <torsten.seemann@gmail.com>
-[13:18:45] Homepage is https://github.com/tseemann/prokka
-[13:18:45] Local time is Tue Feb 12 13:18:45 2019
-[13:18:45] You are aperrin
-[13:18:45] Operating system is darwin
-[13:18:45] You have BioPerl 1.006924
-[13:18:45] System has 8 cores.
-[13:18:45] Will use maximum of 1 cores.
-[13:18:45] Annotating as >>> Bacteria <<<
-[13:18:45] Generating locus_tag from 'Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna' contents.
-[13:18:45] Setting --locustag OHLPOIIB from MD5 8159822bce92b47adcc120629558b9c6
-[13:18:45] Creating new output folder: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes
-[13:18:45] Running: mkdir -p Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes
-[13:18:45] Using filename prefix: GEN2.0219.00001.XXX
-[13:18:45] Setting HMMER_NCPU=1
-[13:18:45] Writing log to: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.log
-[13:18:45] Command: /usr/local/bin/prokka --outdir Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes --cpus 1 --prefix GEN2.0219.00001 Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
-[13:18:45] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin
-[13:18:45] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common
-[13:18:45] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin
-[13:18:45] Looking for 'aragorn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/aragorn
-[13:18:45] Determined aragorn version is 1.2
-[13:18:45] Looking for 'barrnap' - found /usr/local/bin/barrnap
-[13:18:45] Determined barrnap version is 0.8
-[13:18:45] Looking for 'blastp' - found /Users/aperrin/Softwares/bin/blastp
-[13:18:45] Determined blastp version is 2.3
-[13:18:45] Looking for 'cmpress' - found /usr/local/bin/cmpress
-[13:18:45] Determined cmpress version is 1.1
-[13:18:45] Looking for 'cmscan' - found /usr/local/bin/cmscan
-[13:18:45] Determined cmscan version is 1.1
-[13:18:45] Looking for 'egrep' - found /usr/bin/egrep
-[13:18:45] Looking for 'find' - found /usr/bin/find
-[13:18:45] Looking for 'grep' - found /usr/bin/grep
-[13:18:45] Looking for 'hmmpress' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/hmmpress
-[13:18:45] Determined hmmpress version is 3.1
-[13:18:45] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
-[13:18:45] Determined hmmscan version is 3.1
-[13:18:45] Looking for 'java' - found /usr/bin/java
-[13:18:45] Looking for 'less' - found /usr/bin/less
-[13:18:45] Looking for 'makeblastdb' - found /Users/aperrin/Softwares/bin/makeblastdb
-[13:18:45] Determined makeblastdb version is 2.3
-[13:18:45] Looking for 'minced' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common/minced
-[13:18:45] Determined minced version is 2.0
-[13:18:45] Looking for 'parallel' - found /usr/local/bin/parallel
-[13:18:45] Determined parallel version is 20181022
-[13:18:45] Looking for 'prodigal' - found /usr/local/bin/prodigal
-[13:18:45] Determined prodigal version is 2.6
-[13:18:45] Looking for 'prokka-genbank_to_fasta_db' - found /Users/aperrin/Softwares/src/prokka/bin/prokka-genbank_to_fasta_db
-[13:18:45] Looking for 'sed' - found /usr/bin/sed
-[13:18:45] Looking for 'tbl2asn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/tbl2asn
-[13:18:45] Determined tbl2asn version is 25.6
-[13:18:45] Using genetic code table 11.
-[13:18:45] Loading and checking input file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna
-[13:18:45] Wrote 4 contigs totalling 10711 bp.
-[13:18:45] Predicting tRNAs and tmRNAs
-[13:18:45] Running: aragorn -l -gc11 -w Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.fna
-[13:18:45] Found 0 tRNAs
-[13:18:45] Predicting Ribosomal RNAs
-[13:18:45] Running Barrnap with 1 threads
-[13:18:45] Found 0 rRNAs
-[13:18:45] Skipping ncRNA search, enable with --rfam if desired.
-[13:18:45] Total of 0 tRNA + rRNA features
-[13:18:45] Searching for CRISPR repeats
-[13:18:46] Found 0 CRISPRs
-[13:18:46] Predicting coding sequences
-[13:18:46] Contigs total 10711 bp, so using meta mode
-[13:18:46] Running: prodigal -i Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.fna -c -m -g 11 -p meta -f sco -q
-[13:18:46] Found 13 CDS
-[13:18:46] Connecting features back to sequences
-[13:18:46] Not using genus-specific database. Try --usegenus to enable it.
-[13:18:46] Annotating CDS, please be patient.
-[13:18:46] Will use 1 CPUs for similarity searching.
-[13:18:46] There are still 13 unannotated CDS left (started with 13)
-[13:18:46] Will use blast to search against /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot with 1 CPUs
-[13:18:46] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/sprot\.faa | parallel --gnu --plain -j 1 --block 1697 --recstart '>' --pipe blastp -query - -db /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/sprot\.blast 2> /dev/null
-[13:18:47] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/sprot.faa
-[13:18:47] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/sprot.blast
-[13:18:47] There are still 5 unannotated CDS left (started with 13)
-[13:18:47] Will use hmmer3 to search against /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm with 1 CPUs
-[13:18:47] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 1 --block 521 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm /dev/stdin > Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.hmmer3 2> /dev/null
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/HAMAP.hmm.faa
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/HAMAP.hmm.hmmer3
-[13:18:48] Labelling remaining 5 proteins as 'hypothetical protein'
-[13:18:48] Found 8 unique /gene codes.
-[13:18:48] Fixed 0 colliding /gene names.
-[13:18:48] Adding /locus_tag identifiers
-[13:18:48] Assigned 13 locus_tags to CDS and RNA features.
-[13:18:48] Writing outputs to Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/
-[13:18:48] Generating annotation statistics file
-[13:18:48] Generating Genbank and Sequin files
-[13:18:48] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka' -Z Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.err -i Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.fsa 2> /dev/null
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/errorsummary.val
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.dr
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fixedproducts
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.ecn
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.val
-[13:18:48] Repairing broken .GBK output that tbl2asn produces...
-[13:18:48] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.gbf > Examples\/1\-res\-Annotate\/tmp_files\/genome2\.fst\-split5N\.fna\-prokkaRes\/GEN2\.0219\.00001\.gbk
-[13:18:48] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gbf
-[13:18:48] Output files:
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gff
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tbl
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.sqn
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fna
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tsv
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.err
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.txt
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.fsa
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.faa
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.log
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.ffn
-[13:18:48] Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.gbk
-[13:18:48] Annotation finished successfully.
-[13:18:48] Walltime used: 0.05 minutes
-[13:18:48] If you use this result please cite the Prokka paper:
-[13:18:48] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
-[13:18:48] Type 'prokka --citation' for more details.
-[13:18:48] Share and enjoy!
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.sqn b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.sqn
deleted file mode 100644
index bf085e79..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.sqn
+++ /dev/null
@@ -1,1318 +0,0 @@
-Seq-entry ::= set {
- class genbank ,
- seq-set {
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "this_is_genome_1" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 2308 ,
- seq-data
- iupacna "ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATG
-AAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATTATCGGCTCGTCCGGTTCCGGTAAAA
-GCACTTTTTTGCGCTGCATTAACTTCCTCGAAAAATCGAGCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATC
-TGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGG
-TGTTTCAGCACTTTAACCTCTGGAACCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGAT
-TAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAAT
-ATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTAC
-TGTTCGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAG
-AAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCGCACGTGATTTTTCTGCATC
-AGGGGAAAATTGAAGAAGAGGGCAATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGA
-AAGGCTCGCTGAAATAAACGCTAGAGGACGCGCCTCTCAGAGAGCGCGCTCTCTCAGAGAGGCGCGCGCCTCTTTCGC
-AGAGACCNNCGCTCATGAGCGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCT
-GTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCCAGACCGTCGATATTAAGGATTATCCGGCG
-GATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGGCAGACTGTGGTCGTGCCGTCAGGATGGGTGTGTGAA
-AATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGATACAGGGCGCGGTGCGTGGGAATGGCCGGGGA
-CGGTTTATTTTGCTGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGC
-GGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAA
-CCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTT
-CATAACCAAATGGACGGCGCGCGGATTACGCATAGTCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAATGTC
-GCGATTCATGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGG
-GGGATCGGCATCGGGCTGGCGGGTAGCGCCTATGACAATAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTG
-GCCAATATTACCGGATCTGATTGCCGACAACTGGTACACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAA
-GCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATTTATGGCTGTGATAAT
-TTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTG
-TCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAA
-ATTTCCTCCGGTAACGCCCCCTCATTTGTTGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAAT
-CAACCGCAGCACCTCTTTTTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTT
-GATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATC
-AATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCG
-CTGCCGAAGCGGGGAGGGTAACACTCGCGCATAGAGAGCTCTCAGAGGAGCGCGCGCGCTATAGCGCGC" } } ,
- seq {
- id {
- local
- str "this_is_genome_1_1" } ,
- descr {
- title "Histidine transport ATP-binding protein HisP [Genus
- species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 257 ,
- seq-data
- ncbieaa "MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE
-KSSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWNHMTVLENVMEAPIQVLGLSKHDARERAL
-KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE
-MGFARHVSSHVIFLHQGKIEEEGNPEQVFGNPQSPRLQQFLKGSLK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 3 ,
- data
- prot {
- name {
- "Histidine transport ATP-binding protein HisP" } } ,
- location
- int {
- from 0 ,
- to 256 ,
- id
- local
- str "this_is_genome_1_1" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_1_2" } ,
- descr {
- title "hypothetical protein OHLPOIIB_00002 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 467 ,
- seq-data
- ncbieaa "MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRQTVDIKDYPADDGIASFKQA
-FADGQTVVVPSGWVCENINAAITIPAGKTLRIQGAVRGNGRGRFILLDGCQVVGEQGGSLHNVTLDVRGSDCVIKGVT
-MSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILIS
-DHVIERIDCTNGKINWGIGIGLAGSAYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSK
-NAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISSGNAPSFV
-AITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDI
-DRINHQTVNVEAVNFSLPKRGG" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 4 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 466 ,
- id
- local
- str "this_is_genome_1_2" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 1 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_1_1" ,
- location
- int {
- from 0 ,
- to 773 ,
- strand plus ,
- id
- local
- str "this_is_genome_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P02915" } } ,
- xref {
- {
- data
- gene {
- locus "hisP" ,
- locus-tag "OHLPOIIB_00001" } } } } ,
- {
- id
- local
- id 2 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_1_2" ,
- location
- int {
- from 856 ,
- to 2259 ,
- strand plus ,
- id
- local
- str "this_is_genome_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "OHLPOIIB_00002" } } } } } } } } ,
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "this_is_genome_2" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 3295 ,
- seq-data
- iupacna "CGCGATAATATAGCGCGCGCTCATAGCATGAGCGCGCTATTTCTGGCCATCCCGT
-TAACCATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGT
-CGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTGGAAG
-ATATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAACGCCATATTATAGCGCGCCTCATAAGAGCGGCCTATA
-GCGCGCTANNNATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGCCTGTTCA
-GCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATA
-CCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGG
-AGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATC
-TGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAAT
-AGCCAGAGATTCGCGCGTTCAGAGAGGAGCTCTCTCATAGACGCGCGCATATGCGCTCTAGAGAGGCGCGCCTAATGG
-CGCGCTATGATGAAAGCGCTACTGTGGCTGGTTGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATT
-ATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATT
-CACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGTCGCAACGTCAGTTCGCATTACCTGATTCCC
-GCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCTTGGCATGCGGGC
-GTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATG
-TCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATCCCGTTAGCGAAGGACATTATC
-GCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCG
-CGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCT
-GGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCC
-GATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATC
-GCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAAAGCGCTCTCAGAGAG
-AGCGCTCTGCAGATGAGTGAGGCTGAAGCCCGCCCGACTAACTTTATTCGTCAGATTATTGATGAAGATCTGGCGAGT
-GGTAAACATACCACTGTCCATACCCGTTTTCCGCCGGAGCCGAATGGCTATCTGCACATCGGCCACGCGAAATCTATC
-TGCCTGAACTTTGGCATCGCGCAAGATTATCAGGGCCAGTGCAACCTGCGTTTCGATGACACCAACCCGGTAAAAGAA
-GATATCGAGTACGTTGATTCGATCAAAAACGACGTCGAGTGGTTAGGCTTTCACTGGTCTGGCGATATTCGCTACTCC
-TCCGATTACTTTGACCAACTGCACGCCTATGCGGTCGAGCTCATCAATAAAGGCCTGGCCTACGTTGATGAGCTGACG
-CCGGAGCAGATCCGCGAATACCGTGGTACGCTGACCGCGCCGGGTAAAAACAGCCCGTTCCGCGATCGCAGCGTGGAA
-GAAAACCTCGCGCTATTTGAAAAAATGCGTACCGGCGGTTTTGAAGAGGGTAAAGCCTGTCTGCGCGCTAAAATCGAC
-ATGGCGTCGCCGTTTATCGTGATGCGCGATCCGGTGCTGTATCGCATTAAATTCGCCGAGCATCATCAGACCGGCACG
-AAGTGGTGCATCTATCCGATGTACGACTTTACTCACTGCATCAGCGATGCGCTGGAAGGCATTACTCATTCTCTGTGT
-ACGCTGGAGTTCCAGGACAACCGTCGTCTGTACGACTGGGTGCTGGACAACATCACCATTCCGGTTCACCCGCGCCAG
-TACGAATTCTCGCGCCTGAATCTGGAATACACCGTGATGTCCAAGCGTAAGCTGAACCTGCTGGTGACCGACAAACAC
-GTCGAAGGTTGGGATGATCCGCGTATGCCGACTATTTCCGGTCTGCGCCGTCGCGGCTATACCGCGGCTTCTATTCGT
-GAGTTCTGCAAACGCATCGGCGTCACCAAGCAGGACAACACTATTGAGATGGCGTCGCTGGAATCCTGCATTCGCGAA
-GATCTGAACGAAAACGCGCCGCGCGCGATGGCGGTAATCGATCCGGTAAAACTGGTTATCGAAAACTACCCGCAGGGC
-GAGAGCGAAATGGTTACCATGCCTAACCATCCGAATAAACCGGAGATGGGCAGCCGTGAAGTGCCGTTTAGCGGTGAG
-ATCTGGATCGATCGCGCGGATTTCCGCGAAGAAGCGAACAAACAGTACAAACGTCTGGTGATGGGCAAAGAAGTGCGT
-CTGCGTAATGCCTACGTCATTAAAGCGGAGCGCGTAGAGAAGGATGCCGAAGGGAATATCACCACCATCTTCTGTACC
-TATGATGCTGATACGCTGAGTAAAGATCCGGCTGACGGGCGTAAAGTGAAAGGCGTAATCCACTGGGTTAGCGTAGCA
-CATGCGCTGCCGATTGAAATTCGTCTCTACGACCGTCTGTTCAGCGTGCCGAACCCGGGCGCCGCGGAGGACTTCCTG
-TCTGTTATCAACCCCGAATCATTAGTGATTAAGCAGGGGTATGGCGAGCCGTCGCTGAAAGCGGCGGTAGCAGGGAAA
-GCTTTCCAGTTTGAACGTGAAGGTTACTTCTGCCTTGACAGCCGCTATGCAACGGCCGATAAGCTGGTCTTTAACCGC
-ACCGTGGGCCTGCGTGATACCTGGGCGAAAGCGGGCGAATAA" } } ,
- seq {
- id {
- local
- str "this_is_genome_2_1" } ,
- descr {
- title "Phage shock protein B [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 74 ,
- seq-data
- ncbieaa "MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLLQLTDDAQRMRE
-RIQALEDILDAEHPNWRER" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 9 ,
- data
- prot {
- name {
- "Phage shock protein B" } } ,
- location
- int {
- from 0 ,
- to 73 ,
- id
- local
- str "this_is_genome_2_1" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_2_2" } ,
- descr {
- title "5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Genus
- species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 126 ,
- seq-data
- ncbieaa "MPHFIAECTENIREQADLPSLFSKVNEALAATGIFPIGGIRSRAHWLDTWQMADG
-KHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNNVHALFK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 10 ,
- data
- prot {
- name {
- "5-carboxymethyl-2-hydroxymuconate Delta-isomerase" } ,
- ec {
- "5.3.3.10" } } ,
- location
- int {
- from 0 ,
- to 125 ,
- id
- local
- str "this_is_genome_2_2" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_2_3" } ,
- descr {
- title "N-acetylmuramoyl-L-alanine amidase AmiD [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 277 ,
- seq-data
- ncbieaa "MMKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAE
-NFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGVK
-SFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPY
-TPVDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 11 ,
- data
- prot {
- name {
- "N-acetylmuramoyl-L-alanine amidase AmiD" } ,
- ec {
- "3.5.1.28" } } ,
- location
- int {
- from 0 ,
- to 276 ,
- id
- local
- str "this_is_genome_2_3" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_2_4" } ,
- descr {
- title "Glutamine--tRNA ligase [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 555 ,
- seq-data
- ncbieaa "MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIA
-QDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSDYFDQLHAYAVELINKGLAYVDELTPEQIREY
-RGTLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGTKWCIYPM
-YDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDP
-RMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGESEMVTM
-PNHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS
-KDPADGRKVKGVIHWVSVAHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFERE
-GYFCLDSRYATADKLVFNRTVGLRDTWAKAGE" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 12 ,
- data
- prot {
- name {
- "Glutamine--tRNA ligase" } ,
- ec {
- "6.1.1.18" } } ,
- location
- int {
- from 0 ,
- to 554 ,
- id
- local
- str "this_is_genome_2_4" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 5 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_2_1" ,
- location
- int {
- from 27 ,
- to 251 ,
- strand plus ,
- id
- local
- str "this_is_genome_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P0AFM9" } } ,
- xref {
- {
- data
- gene {
- locus "pspB" ,
- locus-tag "OHLPOIIB_00003" } } } } ,
- {
- id
- local
- id 6 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_2_2" ,
- location
- int {
- from 300 ,
- to 680 ,
- strand plus ,
- id
- local
- str "this_is_genome_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:Q05354" } } ,
- xref {
- {
- data
- gene {
- locus "hpcD" ,
- locus-tag "OHLPOIIB_00004" } } } } ,
- {
- id
- local
- id 7 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_2_3" ,
- location
- int {
- from 763 ,
- to 1596 ,
- strand plus ,
- id
- local
- str "this_is_genome_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P75820" } } ,
- xref {
- {
- data
- gene {
- locus "amiD" ,
- locus-tag "OHLPOIIB_00005" } } } } ,
- {
- id
- local
- id 8 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_2_4" ,
- location
- int {
- from 1627 ,
- to 3294 ,
- strand plus ,
- id
- local
- str "this_is_genome_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P00962" } } ,
- xref {
- {
- data
- gene {
- locus "glnS" ,
- locus-tag "OHLPOIIB_00006" } } } } } } } } ,
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "this_is_genome_3" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 2263 ,
- seq-data
- iupacna "ACGCGCTATAGGGCTCTCAGAGAGTCTCAGTGTTTATTGGCATCGTTAGCCTGTT
-TCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAG
-CTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTT
-AATGATGGTGCAACCCTTGCGGGACGCCATTCATGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCT
-GTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAACTCATTCTGGTGTGTGG
-TCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGGCCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAG
-CGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATC
-AGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGA
-AGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCACTGGGCCGAACCTG
-GCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGA
-ACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGAGATCGCGCATAGCGCGCGGCGAGATCCGCGAGACA
-TGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATT
-TCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTA
-GCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATC
-ATTCCGGGATGGCGGTTCGCTTCTTTATGGCTGGTTATCGACTCGAAGGTTGAACGCCTCTAGAGCGCTAGAGGCGCG
-CGCGATATACGCGGCGCGAGACATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGC
-GTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTGCCGCCGTATCCTGC
-CGATGCGGCGGAGTTGCTGGAATCTCTCGTACTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGG
-TGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGA
-ATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTA
-TGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGT
-GCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGGGGTAATCACGCATTCAC
-GGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACCGGATATACGCGCGCGCGC
-TATATAGCGCGCGCGGCGATATAGCGCATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAAATCATCAGA
-AATACGCCGTTCTGGCCTGATGTGGACCTGTCGGAGTTTCGCAGCATGATGCGCACTGATGGCACGGTGACGCAGCCG
-CGTTTAAAGCAGGTTGCGCTGTCGGCAATTTCGGAGGTCAACGCAGAGCTGTATGAGTTTCGCAGACGCCAGCAGATG
-CTGGGGTATGCCTCGCTGGCAGAAGTCCCGGCGGAACAACTGGACGGCAAAAGCGAGCGCATTCAGCACTATTTCAAC
-GCGGTTTACTGCTGGGCACGCGCCATGCTCAACGAACGTTACCAGGACTATGACGCCACGGCATCCGGTGTGAAGCGG
-GGCGAAGAACTGGCAGAAGCCAGCGGTGATTTGTGGCGTGACGCCCGCTGGGCCATCAGCCGGGTGCAGGATGCGCCG
-CACTGCACAGTGGAGCTTATCTGA" } } ,
- seq {
- id {
- local
- str "this_is_genome_3_1" } ,
- descr {
- title "tRNA (guanine-N(1)-)-methyltransferase [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 255 ,
- seq-data
- ncbieaa "MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYG
-GGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDERVIQAEIDEEWSI
-GDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQ
-SLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 17 ,
- data
- prot {
- name {
- "tRNA (guanine-N(1)-)-methyltransferase" } ,
- ec {
- "2.1.1.228" } } ,
- location
- int {
- from 0 ,
- to 254 ,
- id
- local
- str "this_is_genome_3_1" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_3_2" } ,
- descr {
- title "hypothetical protein OHLPOIIB_00008 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 86 ,
- seq-data
- ncbieaa "MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRY
-GLDKEMVMDFFKENHSGMAVRFFMAGYRLEG" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 18 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 85 ,
- id
- local
- str "this_is_genome_3_2" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_3_3" } ,
- descr {
- title "hypothetical protein OHLPOIIB_00009 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 193 ,
- seq-data
- ncbieaa "MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLV
-LEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESRHIYDLKVMQIDPL
-EAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 19 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 192 ,
- id
- local
- str "this_is_genome_3_3" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_3_4" } ,
- descr {
- title "hypothetical protein OHLPOIIB_00010 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 122 ,
- seq-data
- ncbieaa "MMRTDGTVTQPRLKQVALSAISEVNAELYEFRRRQQMLGYASLAEVPAEQLDGKS
-ERIQHYFNAVYCWARAMLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCTVELI" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 20 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 121 ,
- id
- local
- str "this_is_genome_3_4" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 13 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_3_1" ,
- location
- int {
- from 29 ,
- to 796 ,
- strand plus ,
- id
- local
- str "this_is_genome_3" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P0A873" } } ,
- xref {
- {
- data
- gene {
- locus "trmD" ,
- locus-tag "OHLPOIIB_00007" } } } } ,
- {
- id
- local
- id 14 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_3_2" ,
- location
- int {
- from 861 ,
- to 1121 ,
- strand plus ,
- id
- local
- str "this_is_genome_3" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "OHLPOIIB_00008" } } } } ,
- {
- id
- local
- id 15 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_3_3" ,
- location
- int {
- from 1169 ,
- to 1750 ,
- strand plus ,
- id
- local
- str "this_is_genome_3" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "OHLPOIIB_00009" } } } } ,
- {
- id
- local
- id 16 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_3_4" ,
- location
- int {
- from 1894 ,
- to 2262 ,
- strand plus ,
- id
- local
- str "this_is_genome_3" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "OHLPOIIB_00010" } } } } } } } } ,
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "this_is_genome_4" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 2845 ,
- seq-data
- iupacna "ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTAC
-TGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATA
-TTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTT
-TGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGACTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGC
-CCGGCTCGCTCTCTTACACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCCGCCTCAA
-CCTCTATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGTTTTGCGGCCGCGGTGAATATCG
-CCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGA
-TTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCG
-CTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCA
-GCCTGTTACTGATCGTGATTATTGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCG
-TGGTGTATACGTTATTGCTGACGATAGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGA
-CAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATGTCGATCACCAATA
-TTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTT
-TGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATTATGACTA
-AACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGGCGATAGGCACCATTACGCCGCCAGTTG
-GCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGACGTTATCAAACCGTTGATGCCTTTTTACG
-GCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTTTTTACCCCGTCTACTGGGCATCA
-TGTAAACGCTCATAGGCGGCGCGCGCGCTCTCAGGAATGAAGTTTGTTGCGCCAGAACAGGCACCGGAACAGGCGGAG
-GTCATCAAAAATACGCCGTTCTGGCCTGATGTGAACCTGTCGGAATTTCGCAGTGTGATGCGCACTGACGGCACGGTG
-ACGCAGCCGCGTTTAAAGCAGGTCGTGCTGACGGCGATCTCTGAGGTTAACGCTGAGCTGTACGACTTCCGCAACCGT
-CAGCAGATGCTGGGCTGGCGGACACTTGCTGAGGTTCCCGCAGAAATGCTGGACGGTAAAAGCGAGCGTATCCGGCAC
-TACCACAACGCTGTTTTTTGCTGGGCGCGCGCTGTGCTTAATGAGCGTTATCAGGACTATGACGCCACGGCGTCAGGC
-GTGAAGCGAGGGGAGGAGCTGGCGGAGGCCAGCGGCGATCTGTGGCGTGATGCCCGCTGGGCCATCAGCCGGGTGCAG
-GATGCACCGCACTGTACGGTGGAGCTTATCTGACGCTCATAGGCGCGCGCTCATAGCGCGATGGAAACAAATATTACC
-TGGCAACAATTGATAGATGAATATTTCTTCGCAAAACCTCTGCGCTCAGCATCTGAATGGAGTTACACCAAAGTCTTC
-AAATCATTTGTACATTATATGGGGCCGTTAAGCTGCCCTAATGATGTGACATATCACAAAGTGCTTGCCTGGCGCCGT
-TTTCTTTTAAAAGAGAAAAAGCTGTCCGGACGTACCTGGAATAACAAGGTGGCGCATATGCGGGCCATCTTTAACTAC
-GGAATACAGCGAGGGTTACTGCACTATGACGAAAATCCGTTTAACAATTCGGTAGTTAAACCGGACAAGAAGAGAAAG
-AAAACGCTCACTCAGGCACAGATTGAGTATGCCTATCAGATCATGGAGCAGTATGAAAATCAGGAGAATACAGGGCTG
-GGACTGAAATATTCCCGCTGCGCCTTATTTCCTGCATGGTTCTGGCTCACTGTCCTGGATACGCTCTATTACACAGGG
-ATACGTCAGAACCAGTTATTACATATTCGGCTGAATGATGTTGATTTGAGAGAAGGGCAGATTCGGCTGATTACGGAG
-GGGTGTAAAAATCACAAAGAACACTATGTGCCGGTGATCAGTTTTCTGCGTCCACGGCTGACCTGTTTAATGGAGAAA
-GCGCAGAGCGAAGGATTGAAAGGTAATGACCGCCTGTTCAATATTGCACTTTTTACCGGCAAAGATCCCGCCATTGGC
-GATGACATGGATTCTCCTCAGGTAAGAGCATTCTTCCGTCGTCTGTCCAAGGAGTGTCAGTTTGCGATCAGTCCTCAT
-CGTTTCAGACACACGCTGGCCACGGAGATGATGAAAATGCCGGAACAGAATCTGCATATGGCGCAAAGTGTGCTGGGT
-CATTCAAACATGAAATCCACGCTGGAGTATGTGGAGAATGATATTGCAGTGATGGGGAGGGCTCTGGAAGCGCAGTTT
-ATGCAGATTAAGGCAGCACATGCCCGAAGCATTTACAGTGGGTTGACAAAGAATAGATAA" } } ,
- seq {
- id {
- local
- str "this_is_genome_4_1" } ,
- descr {
- title "C4-dicarboxylate TRAP transporter large permease protein
- DctM [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 435 ,
- seq-data
- ncbieaa "MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMF
-SSLDSFALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMS
-AREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFT
-VQKGMALKVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTIVFYRTLKIKDLPSILLQTVVMTGVIMFL
-LATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMTKLGVDPVHFGI
-IMIYNLAIGTITPPVGSGLYVGASVGKVKVEDVIKPLMPFYGAIIGVLLLITYIPEITLFLPRLLGIM" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 24 ,
- data
- prot {
- name {
- "C4-dicarboxylate TRAP transporter large permease
- protein DctM" } } ,
- location
- int {
- from 0 ,
- to 434 ,
- id
- local
- str "this_is_genome_4_1" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_4_2" } ,
- descr {
- title "hypothetical protein OHLPOIIB_00012 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 154 ,
- seq-data
- ncbieaa "MKFVAPEQAPEQAEVIKNTPFWPDVNLSEFRSVMRTDGTVTQPRLKQVVLTAISE
-VNAELYDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWARAVLNERYQDYDATASGVKRGEELAEASGDLW
-RDARWAISRVQDAPHCTVELI" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 25 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 153 ,
- id
- local
- str "this_is_genome_4_2" } } } } } } ,
- seq {
- id {
- local
- str "this_is_genome_4_3" } ,
- descr {
- title "Tyrosine recombinase XerC [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 337 ,
- seq-data
- ncbieaa "METNITWQQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTYHKVLA
-WRRFLLKEKKLSGRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSVVKPDKKRKKTLTQAQIEYAYQIMEQYENQEN
-TGLGLKYSRCALFPAWFWLTVLDTLYYTGIRQNQLLHIRLNDVDLREGQIRLITEGCKNHKEHYVPVISFLRPRLTCL
-MEKAQSEGLKGNDRLFNIALFTGKDPAIGDDMDSPQVRAFFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQS
-VLGHSNMKSTLEYVENDIAVMGRALEAQFMQIKAAHARSIYSGLTKNR" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 26 ,
- data
- prot {
- name {
- "Tyrosine recombinase XerC" } } ,
- location
- int {
- from 0 ,
- to 336 ,
- id
- local
- str "this_is_genome_4_3" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 21 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_4_1" ,
- location
- int {
- from 0 ,
- to 1307 ,
- strand plus ,
- id
- local
- str "this_is_genome_4" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:O07838" } } ,
- xref {
- {
- data
- gene {
- locus "dctM" ,
- locus-tag "OHLPOIIB_00011" } } } } ,
- {
- id
- local
- id 22 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_4_2" ,
- location
- int {
- from 1339 ,
- to 1803 ,
- strand plus ,
- id
- local
- str "this_is_genome_4" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "OHLPOIIB_00012" } } } } ,
- {
- id
- local
- id 23 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "this_is_genome_4_3" ,
- location
- int {
- from 1831 ,
- to 2844 ,
- strand plus ,
- id
- local
- str "this_is_genome_4" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P39776" } } ,
- xref {
- {
- data
- gene {
- locus "xerC" ,
- locus-tag "OHLPOIIB_00013" } } } } } } } } } }
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tbl b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tbl
deleted file mode 100644
index a84c1e12..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tbl
+++ /dev/null
@@ -1,82 +0,0 @@
->Feature this_is_genome_1
-1 774 CDS
- dbxref COG:COG4598
- gene hisP
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P02915
- locus_tag OHLPOIIB_00001
- product Histidine transport ATP-binding protein HisP
-857 2260 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag OHLPOIIB_00002
- product hypothetical protein
->Feature this_is_genome_2
-28 252 CDS
- gene pspB
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P0AFM9
- locus_tag OHLPOIIB_00003
- product Phage shock protein B
-301 681 CDS
- EC_number 5.3.3.10
- gene hpcD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:Q05354
- locus_tag OHLPOIIB_00004
- product 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-764 1597 CDS
- EC_number 3.5.1.28
- dbxref COG:COG3023
- gene amiD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P75820
- locus_tag OHLPOIIB_00005
- product N-acetylmuramoyl-L-alanine amidase AmiD
-1628 3295 CDS
- EC_number 6.1.1.18
- dbxref COG:COG0008
- gene glnS
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P00962
- locus_tag OHLPOIIB_00006
- product Glutamine--tRNA ligase
->Feature this_is_genome_3
-30 797 CDS
- EC_number 2.1.1.228
- dbxref COG:COG0336
- gene trmD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P0A873
- locus_tag OHLPOIIB_00007
- product tRNA (guanine-N(1)-)-methyltransferase
-862 1122 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag OHLPOIIB_00008
- product hypothetical protein
-1170 1751 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag OHLPOIIB_00009
- product hypothetical protein
-1895 2263 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag OHLPOIIB_00010
- product hypothetical protein
->Feature this_is_genome_4
-1 1308 CDS
- dbxref COG:COG1593
- gene dctM
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:O07838
- locus_tag OHLPOIIB_00011
- product C4-dicarboxylate TRAP transporter large permease protein DctM
-1340 1804 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag OHLPOIIB_00012
- product hypothetical protein
-1832 2845 CDS
- dbxref COG:COG4974
- gene xerC
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P39776
- locus_tag OHLPOIIB_00013
- product Tyrosine recombinase XerC
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tsv b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tsv
deleted file mode 100644
index 73686a0e..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.tsv
+++ /dev/null
@@ -1,14 +0,0 @@
-locus_tag ftype length_bp gene EC_number COG product
-OHLPOIIB_00001 CDS 774 hisP COG4598 Histidine transport ATP-binding protein HisP
-OHLPOIIB_00002 CDS 1404 hypothetical protein
-OHLPOIIB_00003 CDS 225 pspB Phage shock protein B
-OHLPOIIB_00004 CDS 381 hpcD 5.3.3.10 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-OHLPOIIB_00005 CDS 834 amiD 3.5.1.28 COG3023 N-acetylmuramoyl-L-alanine amidase AmiD
-OHLPOIIB_00006 CDS 1668 glnS 6.1.1.18 COG0008 Glutamine--tRNA ligase
-OHLPOIIB_00007 CDS 768 trmD 2.1.1.228 COG0336 tRNA (guanine-N(1)-)-methyltransferase
-OHLPOIIB_00008 CDS 261 hypothetical protein
-OHLPOIIB_00009 CDS 582 hypothetical protein
-OHLPOIIB_00010 CDS 369 hypothetical protein
-OHLPOIIB_00011 CDS 1308 dctM COG1593 C4-dicarboxylate TRAP transporter large permease protein DctM
-OHLPOIIB_00012 CDS 465 hypothetical protein
-OHLPOIIB_00013 CDS 1014 xerC COG4974 Tyrosine recombinase XerC
diff --git a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.txt b/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.txt
deleted file mode 100644
index 7c6686d0..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome2.fst-split5N.fna-prokkaRes/GEN2.0219.00001.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-organism: Genus species strain
-contigs: 4
-bases: 10711
-CDS: 13
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna
deleted file mode 100644
index 35d4e193..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna
+++ /dev/null
@@ -1,25 +0,0 @@
->header_genome3_chromo
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
-CGAGTCCGGGAGCGGCGAGATTCCGGGCAGAGGAGGCGGCTATAGCGG
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
-CAGGGCGCGGTATCGCGAGGACTCTCTCTTCGAGGAC
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTCGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAG
-CCCGAGTATTAGCGCGCGGCGGCGCTATAGGCGCGCTATAGGC
-ATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTGGAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAA
-CGAGAGTCTCGGAGGAGCGGCGCTCTGg
-ATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGACGGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGATATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTCCTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAA
-CGCGTCTGCGCGCGCGGAGAGAGGCTCTCAGGAC
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGACGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCTCTCCGGTGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACTTCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGTTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
-CCGGATGCGCGCGATATATCGGCGATGC
-GTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAATGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGCACCGTACCGTGGACGATCGTCCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGAGTTCTGGGGCATGAAGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAG
-CCGGCTCTGCGAGAGAGGAGCGCTCGC
-ATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA
-
->genome3_plasmid
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
-CGCGTAGCGGCCGGAATCTTCTCGGAGAGGCGCTTCTCTCTCGGAG
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGATCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGTTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTAGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCAATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTGGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCATACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
-ACCCGATGGCGCGCAGAGGCGCGAGTTCTGGANNNNNNCACAGGGCTTAGAGGCGCTATGGCA
-ATGATAATTAATGGGAAATTAATTAAAGCAAAAGACTTAGCTAAGGCTGCAGGTGTATCTCGTTCAACAGTGATTAAATATTACGGCATTAGCCGTGAGAATTACGAAAGGGTAGCAACTGAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATCAGGTTTAAAATGGAAAGAAGTTGCTGAAAAAATGAACACGACAAAATATAGCGCAATTGCATATTATAGACGATATTTAGCATTAGAGAAAAACAAATAA
-CAGGCGCTAAGGCGGCGATCCTAGCGCGCGATCGCGCATGCG
-ATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGCCGAACAGCTCCAGCTGGACAGTCTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGTGGATCAGGAATGGAGCTACATGGACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGCCCGGCATCAGCGTAAACAGGCGATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGACGTTCGAGGAGTACGACTTCACCTTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCTGCGATCCCTGAGCTTCATAGAGCGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGTGGGAAAAACGCATCTGGCGATAGCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGTTCGCTTCACAACAGCAGCGGACCTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCGTTACAAAACGACTCTCAATCGTGGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAATAGGTTATCTGCCGTTCAGTCAGGAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACGTTACGAGAAGAGCGCGATGATCCTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGACGTTCGCCGGTGATGCAGCGCTGACATCGGCGATGCTGGACCGGATCTTACATCACTCACACGTCGTGCAAATAAAAGGGGAAAGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTATAGCTGAAGCTAATCCTGAGTAA
\ No newline at end of file
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
deleted file mode 100644
index 4ac24105..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
+++ /dev/null
@@ -1,6 +0,0 @@
->header_genome3_1
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGAGTCCGGGAGCGGCGAGATTCCGGGCAGAGGAGGCGGCTATAGCGGATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAGGGCGCGGTATCGCGAGGACTCTCTCTTCGAGGACATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTCGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCCGAGTATTAGCGCGCGGCGGCGCTATAGGCGCGCTATAGGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTGGAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAACGAGAGTCTCGGAGGAGCGGCGCTCTGGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGACGGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGATATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTCCTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGCGTCTGCGCGCGCGGAGAGAGGCTCTCAGGACATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGACGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCTCTCCGGTGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACTTCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGTTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACCGGATGCGCGCGATATATCGGCGATGCGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAATGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGCACCGTACCGTGGACGATCGTCCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGAGTTCTGGGGCATGAAGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCCGGCTCTGCGAGAGAGGAGCGCTCGCATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA
->genome3_plasmi_2
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACGCGTAGCGGCCGGAATCTTCTCGGAGAGGCGCTTCTCTCTCGGAGATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGATCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGTTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTAGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCAATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTGGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCATACTGTTCTTACCCCGTCTACTGGGCATCATGTAAACCCGATGGCGCGCAGAGGCGCGAGTTCTGGA
->genome3_plasmi_3
-CACAGGGCTTAGAGGCGCTATGGCAATGATAATTAATGGGAAATTAATTAAAGCAAAAGACTTAGCTAAGGCTGCAGGTGTATCTCGTTCAACAGTGATTAAATATTACGGCATTAGCCGTGAGAATTACGAAAGGGTAGCAACTGAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATCAGGTTTAAAATGGAAAGAAGTTGCTGAAAAAATGAACACGACAAAATATAGCGCAATTGCATATTATAGACGATATTTAGCATTAGAGAAAAACAAATAACAGGCGCTAAGGCGGCGATCCTAGCGCGCGATCGCGCATGCGATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGCCGAACAGCTCCAGCTGGACAGTCTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGTGGATCAGGAATGGAGCTACATGGACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGCCCGGCATCAGCGTAAACAGGCGATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGACGTTCGAGGAGTACGACTTCACCTTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCTGCGATCCCTGAGCTTCATAGAGCGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGTGGGAAAAACGCATCTGGCGATAGCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGTTCGCTTCACAACAGCAGCGGACCTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCGTTACAAAACGACTCTCAATCGTGGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAATAGGTTATCTGCCGTTCAGTCAGGAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACGTTACGAGAAGAGCGCGATGATCCTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGACGTTCGCCGGTGATGCAGCGCTGACATCGGCGATGCTGGACCGGATCTTACATCACTCACACGTCGTGCAAATAAAAGGGGAAAGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTATAGCTGAAGCTAATCCTGAGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokka.log b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokka.log
deleted file mode 100644
index 5b897f7f..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokka.log
+++ /dev/null
@@ -1,121 +0,0 @@
-[13:18:48] This is prokka 1.14-dev
-[13:18:48] Written by Torsten Seemann <torsten.seemann@gmail.com>
-[13:18:48] Homepage is https://github.com/tseemann/prokka
-[13:18:48] Local time is Tue Feb 12 13:18:48 2019
-[13:18:48] You are aperrin
-[13:18:48] Operating system is darwin
-[13:18:48] You have BioPerl 1.006924
-[13:18:48] System has 8 cores.
-[13:18:48] Will use maximum of 1 cores.
-[13:18:48] Annotating as >>> Bacteria <<<
-[13:18:48] Generating locus_tag from 'Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna' contents.
-[13:18:48] Setting --locustag PFKCIMHH from MD5 9f4c2611ce3f44c6b2e6fb97579c5725
-[13:18:48] Creating new output folder: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes
-[13:18:48] Running: mkdir -p Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes
-[13:18:48] Using filename prefix: EXAM.1216.00002.XXX
-[13:18:48] Setting HMMER_NCPU=1
-[13:18:48] Writing log to: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.log
-[13:18:48] Command: /usr/local/bin/prokka --outdir Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes --cpus 1 --prefix EXAM.1216.00002 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
-[13:18:48] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin
-[13:18:48] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common
-[13:18:48] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin
-[13:18:48] Looking for 'aragorn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/aragorn
-[13:18:48] Determined aragorn version is 1.2
-[13:18:48] Looking for 'barrnap' - found /usr/local/bin/barrnap
-[13:18:48] Determined barrnap version is 0.8
-[13:18:48] Looking for 'blastp' - found /Users/aperrin/Softwares/bin/blastp
-[13:18:48] Determined blastp version is 2.3
-[13:18:48] Looking for 'cmpress' - found /usr/local/bin/cmpress
-[13:18:48] Determined cmpress version is 1.1
-[13:18:48] Looking for 'cmscan' - found /usr/local/bin/cmscan
-[13:18:48] Determined cmscan version is 1.1
-[13:18:48] Looking for 'egrep' - found /usr/bin/egrep
-[13:18:48] Looking for 'find' - found /usr/bin/find
-[13:18:48] Looking for 'grep' - found /usr/bin/grep
-[13:18:48] Looking for 'hmmpress' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/hmmpress
-[13:18:48] Determined hmmpress version is 3.1
-[13:18:48] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
-[13:18:48] Determined hmmscan version is 3.1
-[13:18:48] Looking for 'java' - found /usr/bin/java
-[13:18:48] Looking for 'less' - found /usr/bin/less
-[13:18:48] Looking for 'makeblastdb' - found /Users/aperrin/Softwares/bin/makeblastdb
-[13:18:48] Determined makeblastdb version is 2.3
-[13:18:48] Looking for 'minced' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common/minced
-[13:18:48] Determined minced version is 2.0
-[13:18:48] Looking for 'parallel' - found /usr/local/bin/parallel
-[13:18:49] Determined parallel version is 20181022
-[13:18:49] Looking for 'prodigal' - found /usr/local/bin/prodigal
-[13:18:49] Determined prodigal version is 2.6
-[13:18:49] Looking for 'prokka-genbank_to_fasta_db' - found /Users/aperrin/Softwares/src/prokka/bin/prokka-genbank_to_fasta_db
-[13:18:49] Looking for 'sed' - found /usr/bin/sed
-[13:18:49] Looking for 'tbl2asn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/tbl2asn
-[13:18:49] Determined tbl2asn version is 25.6
-[13:18:49] Using genetic code table 11.
-[13:18:49] Loading and checking input file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
-[13:18:49] Wrote 3 contigs totalling 8817 bp.
-[13:18:49] Predicting tRNAs and tmRNAs
-[13:18:49] Running: aragorn -l -gc11 -w Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.fna
-[13:18:49] Found 0 tRNAs
-[13:18:49] Predicting Ribosomal RNAs
-[13:18:49] Running Barrnap with 1 threads
-[13:18:49] Found 0 rRNAs
-[13:18:49] Skipping ncRNA search, enable with --rfam if desired.
-[13:18:49] Total of 0 tRNA + rRNA features
-[13:18:49] Searching for CRISPR repeats
-[13:18:49] Found 0 CRISPRs
-[13:18:49] Predicting coding sequences
-[13:18:49] Contigs total 8817 bp, so using meta mode
-[13:18:49] Running: prodigal -i Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.fna -c -m -g 11 -p meta -f sco -q
-[13:18:49] Found 12 CDS
-[13:18:49] Connecting features back to sequences
-[13:18:49] Not using genus-specific database. Try --usegenus to enable it.
-[13:18:49] Annotating CDS, please be patient.
-[13:18:49] Will use 1 CPUs for similarity searching.
-[13:18:49] There are still 12 unannotated CDS left (started with 12)
-[13:18:49] Will use blast to search against /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot with 1 CPUs
-[13:18:49] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/sprot\.faa | parallel --gnu --plain -j 1 --block 1443 --recstart '>' --pipe blastp -query - -db /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/sprot\.blast 2> /dev/null
-[13:18:50] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/sprot.faa
-[13:18:50] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/sprot.blast
-[13:18:50] There are still 4 unannotated CDS left (started with 12)
-[13:18:50] Will use hmmer3 to search against /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm with 1 CPUs
-[13:18:50] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 1 --block 427 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm /dev/stdin > Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.hmmer3 2> /dev/null
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/HAMAP.hmm.faa
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/HAMAP.hmm.hmmer3
-[13:18:51] Labelling remaining 4 proteins as 'hypothetical protein'
-[13:18:51] Possible /pseudo 'N-acetylmuramoyl-L-alanine amidase AmiD' at header_genome3_1 position 880
-[13:18:51] Found 6 unique /gene codes.
-[13:18:51] Fixed 2 duplicate /gene - amiD_1 amiD_2
-[13:18:51] Fixed 1 colliding /gene names.
-[13:18:51] Adding /locus_tag identifiers
-[13:18:51] Assigned 12 locus_tags to CDS and RNA features.
-[13:18:51] Writing outputs to Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/
-[13:18:51] Generating annotation statistics file
-[13:18:51] Generating Genbank and Sequin files
-[13:18:51] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka' -Z Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.err -i Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.fsa 2> /dev/null
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/errorsummary.val
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.dr
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fixedproducts
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.ecn
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.val
-[13:18:51] Repairing broken .GBK output that tbl2asn produces...
-[13:18:51] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.gbf > Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.gbk
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gbf
-[13:18:51] Output files:
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.log
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.ffn
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gbk
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fsa
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.faa
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.txt
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gff
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tbl
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.sqn
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tsv
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fna
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.err
-[13:18:51] Annotation finished successfully.
-[13:18:51] Walltime used: 0.05 minutes
-[13:18:51] If you use this result please cite the Prokka paper:
-[13:18:51] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
-[13:18:51] Type 'prokka --citation' for more details.
-[13:18:51] Share and enjoy!
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.err b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.err
deleted file mode 100644
index 2a0b1de2..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.err
+++ /dev/null
@@ -1,133 +0,0 @@
-Discrepancy Report Results
-
-Summary
-FATAL: MISSING_PROTEIN_ID:12 proteins have invalid IDs.
-DISC_SOURCE_QUALS_ASNDISC:strain (all present, all same)
-DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
-DISC_FEATURE_COUNT:CDS: 12 present
-DISC_COUNT_NUCLEOTIDES:3 nucleotide Bioseqs are present
-FEATURE_LOCATION_CONFLICT:12 features have inconsistent gene locations.
-DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
-ONCALLER_COMMENT_PRESENT:3 comment descriptors were found (all same)
-MISSING_GENOMEASSEMBLY_COMMENTS:3 bioseqs are missing GenomeAssembly structured comments
-MOLTYPE_NOT_MRNA:3 molecule types are not set as mRNA.
-TECHNIQUE_NOT_TSA:3 technique are not set as TSA
-MISSING_STRUCTURED_COMMENT:3 sequences do not include structured comments.
-MISSING_PROJECT:15 sequences do not include project.
-DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
-
-
-Detailed Report
-
-FATAL: DiscRep_ALL:MISSING_PROTEIN_ID::12 proteins halid nvalid IDs.
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_1 (length 276)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_2 (length 276)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_3 (length 157)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_4 (length 74)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_5 (length 467)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_6 (length 257)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_7 (length 263)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_8 (length 95)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2_1 (length 193)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2_2 (length 435)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3_1 (length 84)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3_2 (length 259)
-
-DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all same)
-DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::3 sources have 'strain' for strain
-DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
-DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::3 sources have 'Genus species' for taxname
-DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 12 present
-DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::3 nucleotide Bioseqs are present
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1 (length 5747)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2 (length 1968)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3 (length 1102)
-
-DiscRep_ALL:FEATURE_LOCATION_CONFLICT::12 features have inconsistent gene locations.
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS N-acetylmuramoyl-L-alanine amidase AmiD header_genome3_1:1-831 PFKCIMHH_00001
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS N-acetylmuramoyl-L-alanine amidase AmiD header_genome3_1:880-1710 PFKCIMHH_00002
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS 5-carboxymethyl-2-hydroxymuconate Delta-isomerase header_genome3_1:1655-2128 PFKCIMHH_00003
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS Phage shock protein B header_genome3_1:2172-2396 PFKCIMHH_00004
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS hypothetical protein header_genome3_1:2425-3828 PFKCIMHH_00005
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS Histidine transport ATP-binding protein HisP header_genome3_1:3863-4636 PFKCIMHH_00006
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS tRNA (guanine-N(1)-)-methyltransferase header_genome3_1:4641-5432 PFKCIMHH_00007
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS hypothetical protein header_genome3_1:5460-5747 PFKCIMHH_00008
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS hypothetical protein genome3_plasmi_2:1-582 PFKCIMHH_00009
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS C4-dicarboxylate TRAP transporter large permease protein DctM genome3_plasmi_2:629-1936 PFKCIMHH_00010
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS hypothetical protein genome3_plasmi_3:26-280 PFKCIMHH_00011
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:CDS Insertion sequence IS5376 putative ATP-binding protein genome3_plasmi_3:323-1102 PFKCIMHH_00012
-
-DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
-
-DiscRep_ALL:ONCALLER_COMMENT_PRESENT::3 comment descriptors were found (all same)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-
-DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::3 bioseqs are missing GenomeAssembly structured comments
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1 (length 5747)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2 (length 1968)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3 (length 1102)
-
-DiscRep_ALL:MOLTYPE_NOT_MRNA::3 molecule types are not set as mRNA.
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1 (length 5747)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2 (length 1968)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3 (length 1102)
-
-DiscRep_ALL:TECHNIQUE_NOT_TSA::3 technique are not set as TSA
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1 (length 5747)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2 (length 1968)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3 (length 1102)
-
-DiscRep_ALL:MISSING_STRUCTURED_COMMENT::3 sequences do not include structured comments.
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1 (length 5747)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2 (length 1968)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3 (length 1102)
-
-DiscRep_ALL:MISSING_PROJECT::15 sequences do not include project.
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1 (length 5747)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_1 (length 276)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_2 (length 276)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_3 (length 157)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_4 (length 74)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_5 (length 467)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_6 (length 257)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_7 (length 263)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1_8 (length 95)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2 (length 1968)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2_1 (length 193)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2_2 (length 435)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3 (length 1102)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3_1 (length 84)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3_2 (length 259)
-
-DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
-DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
-DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::3 Molinfos are missing field technique
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_2 (length 1968)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:genome3_plasmi_3 (length 1102)
-Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002:header_genome3_1 (length 5747)
-
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.faa b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.faa
deleted file mode 100644
index b4ae62e6..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.faa
+++ /dev/null
@@ -1,66 +0,0 @@
->PFKCIMHH_00001 N-acetylmuramoyl-L-alanine amidase AmiD
-MRALLWLVGLALLLTGCASEKGIIDEEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSL
-ATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIEL
-ENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPR
-FPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQR
-VIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->PFKCIMHH_00002 N-acetylmuramoyl-L-alanine amidase AmiD
-MRALLWLVGLALLLTGCASEKGIIDEEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSL
-ATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIEL
-ENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPR
-FPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQR
-VIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->PFKCIMHH_00003 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-MPKRRRLPKHYWRSTARINRARYREDSLFEDMPHFIAECTENIREQADLPGLFSKVNEAL
-AASGIFPIGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIK
-AHFADLMENRYLALSFEIAELHPTLNYKQNNVHALFK
->PFKCIMHH_00004 Phage shock protein B
-MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLLQLTDDAQRMRERIQAL
-EDILDAEHPNWRER
->PFKCIMHH_00005 hypothetical protein
-MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQAFADGQ
-TVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTL
-DVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMD
-GARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERIDCTNGKINWGIGIGLAGSTYDN
-SYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSKNAGIDNATIAI
-YGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISS
-GNTPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFM
-ARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
->PFKCIMHH_00006 Histidine transport ATP-binding protein HisP
-MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSED
-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV
-LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT
-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFVRHVSSHVIFLHQGKIEEEGDPEQVF
-GNPQSPRLQQFLKGSLK
->PFKCIMHH_00007 tRNA (guanine-N(1)-)-methyltransferase
-MRAIYRRCVFIGIVSLFPEMFRAITDYGVTGRAVKNGLLNIQSWSPRDFTHDRHRTVDDR
-PYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVC
-GRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFA
-DGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEE
-QARLLAEFKTEHAQQQHKHDGMA
->PFKCIMHH_00008 hypothetical protein
-MNNHFGKGLMAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGIL
-TRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG
->PFKCIMHH_00009 hypothetical protein
-MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLVLEHGG
-APLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
-HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDY
-FNQIVDFLGLHSC
->PFKCIMHH_00010 C4-dicarboxylate TRAP transporter large permease protein DctM
-MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS
-FALLAVPFFVLSGVIMNSGGIAARLINFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIA
-ASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFA
-GGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
-GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSM
-SITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGV
-DPVHLGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITY
-IPEIILFLPRLLGIM
->PFKCIMHH_00011 hypothetical protein
-MIINGKLIKAKDLAKAAGVSRSTVIKYYGISRENYERVATERRKLAFELRASGLKWKEVA
-EKMNTTKYSAIAYYRRYLALEKNK
->PFKCIMHH_00012 Insertion sequence IS5376 putative ATP-binding protein
-MVELQHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQA
-MYTRMAAFPAVKTFEEYDFTFATGAPQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAI
-AMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRGVMAPKLLIIDEIGYLPFSQ
-EEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGE
-SYRLKQKRKAGVIAEANPE
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.ffn b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.ffn
deleted file mode 100644
index ed27b471..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.ffn
+++ /dev/null
@@ -1,158 +0,0 @@
->PFKCIMHH_00001 N-acetylmuramoyl-L-alanine amidase AmiD
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->PFKCIMHH_00002 N-acetylmuramoyl-L-alanine amidase AmiD
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->PFKCIMHH_00003 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-ATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACAGG
-GCGCGGTATCGCGAGGACTCTCTCTTCGAGGACATGCCGCACTTTATTGCTGAATGTACT
-GAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTG
-GCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACC
-TGGCAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGC
-GCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTCGGGCTGATTAAA
-GCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAG
-TTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAG
->PFKCIMHH_00004 Phage shock protein B
-ATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATT
-TGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAG
-CAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCATTCAGGCGCTG
-GAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAA
->PFKCIMHH_00005 hypothetical protein
-ATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTGCGCTTGCTGTT
-CTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATT
-AAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAG
-ACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCG
-GCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATT
-TTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTG
-GATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGCCCCGTC
-GCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGAC
-ATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGAC
-GGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGTGGAAT
-GTCGCGATTCACGACCGCGATATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGT
-ACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAAC
-AGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGAT
-TGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCC
-AAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCAATT
-TATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTC
-ATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAAC
-GCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCC
-GGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAA
-CTGCATAATCAACCGCAGCACCTCTTCCTGCGTAATATCAACGTGATGCAAACTTCAGCG
-ATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATG
-GCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAG
-AGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTT
-TCGCTGCCGAAGCGGGGAGGGTAA
->PFKCIMHH_00006 Histidine transport ATP-binding protein HisP
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCC
-GGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGAC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCTCTCCGGTGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACT
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGTTCGCCATGTCTCTTCG
-CACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
->PFKCIMHH_00007 tRNA (guanine-N(1)-)-methyltransferase
-ATGCGCGCGATATATCGGCGATGCGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATG
-TTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAATGGCCTGCTGAAC
-ATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGCACCGTACCGTGGACGATCGT
-CCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCAC
-GCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGC
-AAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGT
-GGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCA
-ATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTC
-GCCCGGTTTATACCGGGAGTTCTGGGGCATGAAGCATCAGCAATCGAAGATTCGTTTGCT
-GATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTA
-CCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCGCTGGCGTTTGAAACAGTCG
-CTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAG
-CAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGAT
-GGGATGGCATAG
->PFKCIMHH_00008 hypothetical protein
-ATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGC
-GCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACA
-CACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTG
-ACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCC
-GGGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA
->PFKCIMHH_00009 hypothetical protein
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTA
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
->PFKCIMHH_00010 C4-dicarboxylate TRAP transporter large permease protein DctM
-ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCC
-ATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTA
-CTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGT
-TTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
-ATTGCCGCCCGGCTGATCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGTTCGCTC
-TCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCC
-GCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGC
-GGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
-ACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCC
-GGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTAGTC
-GCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTT
-GCCGTTGAGGCCATTCCCAGCCTGTTACTGATCGTGATTATCGTCGGCGGCATTGTGCAG
-GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACG
-ATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTG
-GTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCAATG
-TCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
-CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATC
-GGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTGGGCGTC
-GATCCGGTGCATTTGGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCG
-CCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTG
-ATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTAC
-ATTCCGGAAATCATACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
->PFKCIMHH_00011 hypothetical protein
-ATGATAATTAATGGGAAATTAATTAAAGCAAAAGACTTAGCTAAGGCTGCAGGTGTATCT
-CGTTCAACAGTGATTAAATATTACGGCATTAGCCGTGAGAATTACGAAAGGGTAGCAACT
-GAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATCAGGTTTAAAATGGAAAGAAGTTGCT
-GAAAAAATGAACACGACAAAATATAGCGCAATTGCATATTATAGACGATATTTAGCATTA
-GAGAAAAACAAATAA
->PFKCIMHH_00012 Insertion sequence IS5376 putative ATP-binding protein
-ATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGCCGAACAGCTCCAGCTGGACAGT
-CTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGTGGATCAGGAATGGAGCTACATG
-GACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGCCCGGCATCAGCGTAAACAGGCG
-ATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGACGTTCGAGGAGTACGACTTCACC
-TTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCTGCGATCCCTGAGCTTCATAGAG
-CGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGTGGGAAAAACGCATCTGGCGATA
-GCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGTTCGCTTCACAACAGCAGCGGAC
-CTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCGTTACAAAACGACTCTCAATCGT
-GGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAATAGGTTATCTGCCGTTCAGTCAG
-GAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACGTTACGAGAAGAGCGCGATGATC
-CTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGACGTTCGCCGGTGATGCAGCGCTG
-ACATCGGCGATGCTGGACCGGATCTTACATCACTCACACGTCGTGCAAATAAAAGGGGAA
-AGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTATAGCTGAAGCTAATCCTGAGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fna b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fna
deleted file mode 100644
index 07bd5c4b..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fna
+++ /dev/null
@@ -1,151 +0,0 @@
->header_genome3_1
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGAGTCCGG
-GAGCGGCGAGATTCCGGGCAGAGGAGGCGGCTATAGCGGATGAGAGCGCTACTGTGGCTG
-GTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAG
-GGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTG
-GTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAAC
-GTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATC
-TGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGC
-GCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATG
-TCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCG
-TTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCG
-GATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCG
-GCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGC
-GCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTAT
-GAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATG
-CACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAA
-GCATTACTGGAGAAGTACGGCCAGGATTAACAGGGCGCGGTATCGCGAGGACTCTCTCTT
-CGAGGACATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTT
-ACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGG
-CGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGA
-TTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCA
-GGAAGTCGGCGAAATGCTGTTCGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAA
-CCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACA
-AAACAACGTACACGCGTTATTTAAATAGCCCGAGTATTAGCGCGCGGCGGCGCTATAGGC
-GCGCTATAGGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTG
-TGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGC
-AAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCA
-TTCAGGCGCTGGAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAACGAG
-AGTCTCGGAGGAGCGGCGCTCTGGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTG
-ACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGT
-GAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTC
-AAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAAT
-ATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGT
-GGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGC
-GGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTG
-GCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTG
-ATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGC
-CAGGGATTTCATAACCAAATGGACGGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTA
-CAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGATATCCTGATTTCCGAT
-CATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGG
-CTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTG
-GTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACAT
-TTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGT
-ATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGAT
-ATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCA
-ATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAA
-TTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTA
-CGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTCCTGCGTAAT
-ATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGT
-AAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTT
-CATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACC
-GTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGCGTCTGCGCG
-CGCGGAGAGAGGCTCTCAGGACATGTCAGAAAATAAATTACACGTTATCGATTTGCACAA
-ACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGT
-GATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTT
-CCTCGAAAAACCGAGCGAAGACGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCG
-CGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCG
-CCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGT
-GATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTT
-GAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCT
-CTCCGGTGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGT
-TTTACTGTTCGATGAACCCACTTCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCG
-CATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGG
-CTTCGTTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGA
-GGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAA
-AGGCTCGCTGAAATAACCGGATGCGCGCGATATATCGGCGATGCGTGTTTATTGGCATCG
-TTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAG
-TAAAAAATGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGC
-ACCGTACCGTGGACGATCGTCCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAAC
-CCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTT
-ATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATC
-AGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCG
-AAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAA
-TGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGAGTTCTGGGGCATGAAGCATCAG
-CAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAG
-TGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTC
-GCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAA
-ACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCAC
-AACAGCAGCATAAACATGATGGGATGGCATAGCCGGCTCTGCGAGAGAGGAGCGCTCGCA
-TGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCG
-CGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACAC
-ACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGA
-CGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCG
-GGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA
->genome3_plasmi_2
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTA
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACGCGTAGCGGCCGGAATC
-TTCTCGGAGAGGCGCTTCTCTCTCGGAGATGATTGACCCTATTTTTGCGTCCTGTACGCT
-AATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTAT
-CGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGC
-GCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTT
-GTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGATCAATTTTGCCAAACT
-GTTTACTGGCAAACTGCCCGGTTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTT
-CGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCC
-GATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGC
-GCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGG
-GGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGT
-TGGCTGTATGCTGGTCACGCTGGTAGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCAC
-CGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGTTACTGAT
-CGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGAT
-TGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGA
-TTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGC
-AACCTCTTCGGCGATGTCCTTCTCAATGTCGATCACCAATATTCCTGCGGCGCTGAGCGA
-TATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTT
-GTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCT
-GCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTGGGCATTATCATGATCTA
-TAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAG
-CGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGAT
-TATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCATACTGTTCTTACCCCGTCT
-ACTGGGCATCATGTAAACCCGATGGCGCGCAGAGGCGCGAGTTCTGGA
->genome3_plasmi_3
-CACAGGGCTTAGAGGCGCTATGGCAATGATAATTAATGGGAAATTAATTAAAGCAAAAGA
-CTTAGCTAAGGCTGCAGGTGTATCTCGTTCAACAGTGATTAAATATTACGGCATTAGCCG
-TGAGAATTACGAAAGGGTAGCAACTGAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATC
-AGGTTTAAAATGGAAAGAAGTTGCTGAAAAAATGAACACGACAAAATATAGCGCAATTGC
-ATATTATAGACGATATTTAGCATTAGAGAAAAACAAATAACAGGCGCTAAGGCGGCGATC
-CTAGCGCGCGATCGCGCATGCGATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGC
-CGAACAGCTCCAGCTGGACAGTCTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGT
-GGATCAGGAATGGAGCTACATGGACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGC
-CCGGCATCAGCGTAAACAGGCGATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGAC
-GTTCGAGGAGTACGACTTCACCTTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCT
-GCGATCCCTGAGCTTCATAGAGCGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGT
-GGGAAAAACGCATCTGGCGATAGCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGT
-TCGCTTCACAACAGCAGCGGACCTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCG
-TTACAAAACGACTCTCAATCGTGGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAAT
-AGGTTATCTGCCGTTCAGTCAGGAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACG
-TTACGAGAAGAGCGCGATGATCCTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGAC
-GTTCGCCGGTGATGCAGCGCTGACATCGGCGATGCTGGACCGGATCTTACATCACTCACA
-CGTCGTGCAAATAAAAGGGGAAAGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTAT
-AGCTGAAGCTAATCCTGAGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fsa b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fsa
deleted file mode 100644
index b25cc556..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fsa
+++ /dev/null
@@ -1,151 +0,0 @@
->header_genome3_1 [gcode=11] [organism=Genus species] [strain=strain]
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGAGTCCGG
-GAGCGGCGAGATTCCGGGCAGAGGAGGCGGCTATAGCGGATGAGAGCGCTACTGTGGCTG
-GTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAG
-GGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTG
-GTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAAC
-GTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATC
-TGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGC
-GCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATG
-TCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCG
-TTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCG
-GATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCG
-GCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGC
-GCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTAT
-GAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATG
-CACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAA
-GCATTACTGGAGAAGTACGGCCAGGATTAACAGGGCGCGGTATCGCGAGGACTCTCTCTT
-CGAGGACATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTT
-ACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGG
-CGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGA
-TTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCA
-GGAAGTCGGCGAAATGCTGTTCGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAA
-CCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACA
-AAACAACGTACACGCGTTATTTAAATAGCCCGAGTATTAGCGCGCGGCGGCGCTATAGGC
-GCGCTATAGGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTG
-TGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGC
-AAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCA
-TTCAGGCGCTGGAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAACGAG
-AGTCTCGGAGGAGCGGCGCTCTGGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTG
-ACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGT
-GAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTC
-AAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAAT
-ATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGT
-GGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGC
-GGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTG
-GCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTG
-ATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGC
-CAGGGATTTCATAACCAAATGGACGGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTA
-CAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGATATCCTGATTTCCGAT
-CATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGG
-CTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTG
-GTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACAT
-TTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGT
-ATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGAT
-ATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCA
-ATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAA
-TTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTA
-CGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTCCTGCGTAAT
-ATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGT
-AAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTT
-CATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACC
-GTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGCGTCTGCGCG
-CGCGGAGAGAGGCTCTCAGGACATGTCAGAAAATAAATTACACGTTATCGATTTGCACAA
-ACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGT
-GATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTT
-CCTCGAAAAACCGAGCGAAGACGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCG
-CGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCG
-CCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGT
-GATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTT
-GAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCT
-CTCCGGTGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGT
-TTTACTGTTCGATGAACCCACTTCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCG
-CATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGG
-CTTCGTTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGA
-GGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAA
-AGGCTCGCTGAAATAACCGGATGCGCGCGATATATCGGCGATGCGTGTTTATTGGCATCG
-TTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAG
-TAAAAAATGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGC
-ACCGTACCGTGGACGATCGTCCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAAC
-CCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTT
-ATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATC
-AGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCG
-AAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAA
-TGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGAGTTCTGGGGCATGAAGCATCAG
-CAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAG
-TGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTC
-GCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAA
-ACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCAC
-AACAGCAGCATAAACATGATGGGATGGCATAGCCGGCTCTGCGAGAGAGGAGCGCTCGCA
-TGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCG
-CGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACAC
-ACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGA
-CGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCG
-GGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA
->genome3_plasmi_2 [gcode=11] [organism=Genus species] [strain=strain]
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTA
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACGCGTAGCGGCCGGAATC
-TTCTCGGAGAGGCGCTTCTCTCTCGGAGATGATTGACCCTATTTTTGCGTCCTGTACGCT
-AATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTAT
-CGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGC
-GCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTT
-GTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGATCAATTTTGCCAAACT
-GTTTACTGGCAAACTGCCCGGTTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTT
-CGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCC
-GATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGC
-GCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGG
-GGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGT
-TGGCTGTATGCTGGTCACGCTGGTAGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCAC
-CGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGTTACTGAT
-CGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGAT
-TGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGA
-TTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGC
-AACCTCTTCGGCGATGTCCTTCTCAATGTCGATCACCAATATTCCTGCGGCGCTGAGCGA
-TATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTT
-GTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCT
-GCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTGGGCATTATCATGATCTA
-TAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAG
-CGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGAT
-TATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCATACTGTTCTTACCCCGTCT
-ACTGGGCATCATGTAAACCCGATGGCGCGCAGAGGCGCGAGTTCTGGA
->genome3_plasmi_3 [gcode=11] [organism=Genus species] [strain=strain]
-CACAGGGCTTAGAGGCGCTATGGCAATGATAATTAATGGGAAATTAATTAAAGCAAAAGA
-CTTAGCTAAGGCTGCAGGTGTATCTCGTTCAACAGTGATTAAATATTACGGCATTAGCCG
-TGAGAATTACGAAAGGGTAGCAACTGAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATC
-AGGTTTAAAATGGAAAGAAGTTGCTGAAAAAATGAACACGACAAAATATAGCGCAATTGC
-ATATTATAGACGATATTTAGCATTAGAGAAAAACAAATAACAGGCGCTAAGGCGGCGATC
-CTAGCGCGCGATCGCGCATGCGATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGC
-CGAACAGCTCCAGCTGGACAGTCTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGT
-GGATCAGGAATGGAGCTACATGGACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGC
-CCGGCATCAGCGTAAACAGGCGATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGAC
-GTTCGAGGAGTACGACTTCACCTTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCT
-GCGATCCCTGAGCTTCATAGAGCGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGT
-GGGAAAAACGCATCTGGCGATAGCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGT
-TCGCTTCACAACAGCAGCGGACCTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCG
-TTACAAAACGACTCTCAATCGTGGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAAT
-AGGTTATCTGCCGTTCAGTCAGGAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACG
-TTACGAGAAGAGCGCGATGATCCTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGAC
-GTTCGCCGGTGATGCAGCGCTGACATCGGCGATGCTGGACCGGATCTTACATCACTCACA
-CGTCGTGCAAATAAAAGGGGAAAGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTAT
-AGCTGAAGCTAATCCTGAGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gbk b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gbk
deleted file mode 100644
index 92490591..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gbk
+++ /dev/null
@@ -1,350 +0,0 @@
-LOCUS header_genome3_1 5747 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..5747
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 1..831
- /gene="amiD_1"
- /locus_tag="PFKCIMHH_00001"
- /EC_number="3.5.1.28"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P75820"
- /codon_start=1
- /transl_table=11
- /product="N-acetylmuramoyl-L-alanine amidase AmiD"
- /translation="MRALLWLVGLALLLTGCASEKGIIDEEGYQLDTRHRAQAAYPRI
- KVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGV
- SFWRGATRLNDTSIGIELENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKP
- QNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATV
- LALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
- "
- CDS 880..1710
- /gene="amiD_2"
- /locus_tag="PFKCIMHH_00002"
- /EC_number="3.5.1.28"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P75820"
- /codon_start=1
- /transl_table=11
- /product="N-acetylmuramoyl-L-alanine amidase AmiD"
- /translation="MRALLWLVGLALLLTGCASEKGIIDEEGYQLDTRHRAQAAYPRI
- KVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGV
- SFWRGATRLNDTSIGIELENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKP
- QNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATV
- LALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
- "
- CDS 1655..2128
- /gene="hpcD"
- /locus_tag="PFKCIMHH_00003"
- /EC_number="5.3.3.10"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:Q05354"
- /codon_start=1
- /transl_table=11
- /product="5-carboxymethyl-2-hydroxymuconate
- Delta-isomerase"
- /translation="MPKRRRLPKHYWRSTARINRARYREDSLFEDMPHFIAECTENIR
- EQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAG
- RSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNNVHALFK"
- CDS 2172..2396
- /gene="pspB"
- /locus_tag="PFKCIMHH_00004"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P0AFM9"
- /codon_start=1
- /transl_table=11
- /product="Phage shock protein B"
- /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLL
- QLTDDAQRMRERIQALEDILDAEHPNWRER"
- CDS 2425..3828
- /locus_tag="PFKCIMHH_00005"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYP
- ADDGIASFKQAFADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQ
- DGCQVVGEQGGSLHNVTLDVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDD
- ITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERI
- DCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIR
- NVKAKNITPDFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIP
- QNFKLNAIRLDNRQVAYKLRGIQISSGNTPSFVAITNVRMTRATLELHNQPQHLFLRN
- INVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDIDRINH
- QTVNVEAVNFSLPKRGG"
- CDS 3863..4636
- /gene="hisP"
- /locus_tag="PFKCIMHH_00006"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P02915"
- /codon_start=1
- /transl_table=11
- /product="Histidine transport ATP-binding protein HisP"
- /translation="MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGK
- STFLRCINFLEKPSEDAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
- LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR
- VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFVRHV
- SSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK"
- CDS 4641..5432
- /gene="trmD"
- /locus_tag="PFKCIMHH_00007"
- /EC_number="2.1.1.228"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P0A873"
- /codon_start=1
- /transl_table=11
- /product="tRNA (guanine-N(1)-)-methyltransferase"
- /translation="MRAIYRRCVFIGIVSLFPEMFRAITDYGVTGRAVKNGLLNIQSW
- SPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKL
- DQAGVSELATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSV
- ARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLK
- QSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
- CDS 5460..5747
- /locus_tag="PFKCIMHH_00008"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MNNHFGKGLMAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMF
- EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG"
-ORIGIN
- 1 atgagagcgc tactgtggct ggtgggtctt gcgttgctgt taacaggctg cgcgagcgaa
- 61 aaaggaatta tcgatgaaga gggatatcag cttgataccc gacatcgggc gcaggcggcc
- 121 tatccgcgca ttaaagtcct ggtgattcac tatacggcgg aaaactttga cgtttcgctg
- 181 gcgacgttaa cgggccgcaa cgtcagttcg cattacctga ttcccgcaac cccgccatta
- 241 tatggcggta aaccgcgcat ctggcaactg gtgccggaac aggatcaggc ctggcatgcg
- 301 ggcgtcagtt tctggcgagg cgccacgcgt ctcaatgata cgtctattgg cattgagctg
- 361 gaaaatcgcg gctggcgaat gtccggcggg gtgaaatctt tcgcgccgtt tgaatccgcg
- 421 caaattcagg cattgattcc gttagcgaag gacattatcg cgcgctatga catcaaaccg
- 481 cagaatgtgg tggcccatgc ggatatcgcg ccgcagcgta aagacgatcc cggcccgcgc
- 541 ttcccgtggc gcgagctggc ggcacagggg attggcgcct ggcctgacgc ccagcgtgtg
- 601 gcgttttatc tggctggacg cgcgccgtat acgccagtcg ataccgcaac ggtgcttgcg
- 661 ttactctcgc gctatggcta tgaagtcaaa gccgatatga cggcgcgcga gcaacagcgg
- 721 gtgattatgg cgttccagat gcacttccgt ccggcgcaat ggaacggtat cgcagatgcc
- 781 gaaacgcagg cgattgccga agcattactg gagaagtacg gccaggatta acgagtccgg
- 841 gagcggcgag attccgggca gaggaggcgg ctatagcgga tgagagcgct actgtggctg
- 901 gtgggtcttg cgttgctgtt aacaggctgc gcgagcgaaa aaggaattat cgatgaagag
- 961 ggatatcagc ttgatacccg acatcgggcg caggcggcct atccgcgcat taaagtcctg
- 1021 gtgattcact atacggcgga aaactttgac gtttcgctgg cgacgttaac gggccgcaac
- 1081 gtcagttcgc attacctgat tcccgcaacc ccgccattat atggcggtaa accgcgcatc
- 1141 tggcaactgg tgccggaaca ggatcaggcc tggcatgcgg gcgtcagttt ctggcgaggc
- 1201 gccacgcgtc tcaatgatac gtctattggc attgagctgg aaaatcgcgg ctggcgaatg
- 1261 tccggcgggg tgaaatcttt cgcgccgttt gaatccgcgc aaattcaggc attgattccg
- 1321 ttagcgaagg acattatcgc gcgctatgac atcaaaccgc agaatgtggt ggcccatgcg
- 1381 gatatcgcgc cgcagcgtaa agacgatccc ggcccgcgct tcccgtggcg cgagctggcg
- 1441 gcacagggga ttggcgcctg gcctgacgcc cagcgtgtgg cgttttatct ggctggacgc
- 1501 gcgccgtata cgccagtcga taccgcaacg gtgcttgcgt tactctcgcg ctatggctat
- 1561 gaagtcaaag ccgatatgac ggcgcgcgag caacagcggg tgattatggc gttccagatg
- 1621 cacttccgtc cggcgcaatg gaacggtatc gcagatgccg aaacgcaggc gattgccgaa
- 1681 gcattactgg agaagtacgg ccaggattaa cagggcgcgg tatcgcgagg actctctctt
- 1741 cgaggacatg ccgcacttta ttgctgaatg tactgaaaat attcgcgagc aggctgattt
- 1801 acccggcctg ttcagcaagg taaacgaggc gctggccgcc agcgggattt tccccatcgg
- 1861 cggtatccgc agtcgcgccc actggctgga tacctggcag atggctgacg gtaagcatga
- 1921 ttacgcgttt gtgcatatga cgctgaaaat cggcgccggg cgcagcctgg agagccgtca
- 1981 ggaagtcggc gaaatgctgt tcgggctgat taaagcccac ttcgccgacc tgatggagaa
- 2041 ccgctatctg gcgctgtcgt ttgagattgc cgagttacat ccaacgctca attacaaaca
- 2101 aaacaacgta cacgcgttat ttaaatagcc cgagtattag cgcgcggcgg cgctataggc
- 2161 gcgctatagg catgagcgcg ctatttctgg ccatcccgtt aaccattttt gtgttgtttg
- 2221 tgttaccgat ttggctgtgg ctgcattaca gcaaccgcgc cggtcgggga gaactgtcgc
- 2281 aaagcgagca gcaacgctta ctgcaactca cagacgacgc gcaacgtatg cgcgagcgca
- 2341 ttcaggcgct ggaagacatt cttgatgcag agcatccgaa ctggagagag cgctaacgag
- 2401 agtctcggag gagcggcgct ctggatgccc gcgactaaat tctcccgacg taccctcctg
- 2461 acggcaggtt ctgcgcttgc tgttcttcct ttcctgcgcg ccttgccggt acaggcgcgt
- 2521 gaacctcgcg agaccgtcga tattaaggat tatccggcgg atgacggtat cgcctcgttc
- 2581 aaacaggcct tcgccgacgg acagaccgtg gtcgtaccgc caggatgggt gtgtgaaaat
- 2641 atcaatgcgg cgataacgat tccggcggga aaaacgctgc gggtacaggg cgcggtgcgt
- 2701 gggaatggcc ggggacggtt tattttgcag gacgggtgtc aggtggtggg ggagcagggc
- 2761 ggcagtctgc acaatgtgac gctggatgtt cgcgggtcgg actgtgtgat taaaggcgtg
- 2821 gcgatgagcg gctttggccc cgtcgcgcaa attttcatcg gtggtaagga accgcaggtg
- 2881 atgcgtaatc tcattatcga tgacatcacc gttacccacg ccaactacgc cattctccgc
- 2941 cagggatttc ataaccaaat ggacggcgcg aggattacgc atagccgctt tagcgattta
- 3001 cagggggacg ccattgagtg gaatgtcgcg attcacgacc gcgatatcct gatttccgat
- 3061 catgtcatcg aacgcattga ttgtaccaat ggcaaaatca actgggggat cggcatcggg
- 3121 ctggcgggta gcacctatga caacagttat cctgaagacc aggcagtaaa aaactttgtg
- 3181 gtggccaata ttaccggatc tgattgccga cagcttgtgc acgtagaaaa tggcaaacat
- 3241 ttcgtcattc gcaatgtcaa agccaaaaac atcacgcccg atttcagtaa aaatgcgggt
- 3301 attgataacg caacgatcgc aatttatggc tgtgataatt tcgtcattga taatattgat
- 3361 atgacgaata gtgccgggat gctcatcggc tatggcgtcg ttaaaggaaa atacctgtca
- 3421 attccgcaaa actttaaatt aaacgctatt cggttggata atcgccaggt tgcttataaa
- 3481 ttacgcggca ttcaaatttc ctccggcaac accccctctt ttgtcgccat caccaatgta
- 3541 cggatgacgc gtgctacgct ggaactgcat aatcaaccgc agcacctctt cctgcgtaat
- 3601 atcaacgtga tgcaaacttc agcgattggc ccggcgttaa aaatgcattt cgatttgcgt
- 3661 aaagatgtcc gtggtcaatt tatggcccgc caggacacgc tgctttccct cgctaatgtt
- 3721 catgccatca atgaaaacgg gcagagttcc gtggatatcg acaggattaa tcaccaaacc
- 3781 gtgaatgtcg aagcagtgaa tttttcgctg ccgaagcggg gagggtaacg cgtctgcgcg
- 3841 cgcggagaga ggctctcagg acatgtcaga aaataaatta cacgttatcg atttgcacaa
- 3901 acgctacggc ggtcatgaag tgctgaaagg ggtatcgctg caggcccgcg ccggagatgt
- 3961 gattagcatc atcggctcgt ccggctccgg taaaagcact tttttgcgct gtattaactt
- 4021 cctcgaaaaa ccgagcgaag acgcgattat cgtgaacggt cagaacatta atctggtgcg
- 4081 cgacaaagac gggcagctca aagtggcgga taaaaatcag ctacgcttgt tgcgtacccg
- 4141 cctgacgatg gtgtttcagc actttaacct ctggagccac atgacggtgc tggaaaatgt
- 4201 gatggaagcg ccgattcagg tactgggatt aagcaagcac gacgcgcgcg agcgggcgtt
- 4261 gaaatatctg gcgaaggtgg ggattgatga gcgcgctcag ggcaaatatc ccgttcatct
- 4321 ctccggtggc caacagcagc gcgtttctat tgcgcgcgcg ctggcgatgg aacctgacgt
- 4381 tttactgttc gatgaaccca cttcggcgct cgatcctgaa ctggtcggcg aagtgttgcg
- 4441 catcatgcaa caactggcgg aagaaggcaa aacgatggtg gtggtcacgc atgaaatggg
- 4501 cttcgttcgc catgtctctt cgcacgttat ttttctgcat caggggaaaa ttgaagaaga
- 4561 gggcgatccg gagcaggtgt tcggcaatcc gcaaagcccg cgtttacagc aattcctgaa
- 4621 aggctcgctg aaataaccgg atgcgcgcga tatatcggcg atgcgtgttt attggcatcg
- 4681 ttagcctgtt tcctgaaatg ttccgcgcaa ttaccgatta cggggtaact ggccgggcag
- 4741 taaaaaatgg cctgctgaac atccaaagct ggagtcctcg cgacttcacg catgaccggc
- 4801 accgtaccgt ggacgatcgt ccttacggcg gcggaccagg gatgttaatg atggtgcaac
- 4861 ccttgcggga cgccattcac gcagcaaaag ccgcggcagg tgaaggcgct aaagtgattt
- 4921 atctgtcgcc tcagggacgc aagcttgatc aagcgggcgt tagcgagctg gccacgaatc
- 4981 agaagcttat tctggtgtgt ggtcgctacg aaggcgtaga tgagcgcgta attcagaccg
- 5041 aaattgacga agaatggtca attggcgatt acgttctcag cggtggcgaa ctaccggcaa
- 5101 tgacgctgat tgactccgtc gcccggttta taccgggagt tctggggcat gaagcatcag
- 5161 caatcgaaga ttcgtttgct gatgggttgc tggattgtcc gcactatacg cgccctgaag
- 5221 tgttagaggg gatggaagta ccgccagtat tgctgtcggg aaaccatgct gagatacgtc
- 5281 gctggcgttt gaaacagtcg ctgggccgaa cctggcttag aagacctgaa cttctggaaa
- 5341 acctggctct gactgaagag caagcaaggt tgctggcgga gttcaaaaca gaacacgcac
- 5401 aacagcagca taaacatgat gggatggcat agccggctct gcgagagagg agcgctcgca
- 5461 tgaataatca ttttgggaaa gggttaatgg ccgggttgca cgcgccatat gcatatagcg
- 5521 cgcatcatgc ggtgaatttc tgttctgagt ataaacgtgg ctttgtattg ggttttacac
- 5581 accgtatgtt cgaaaagacc ggcgatcgtc aacttagcgc gtgggaggct ggaattctga
- 5641 cgcgtcgcta tggtctggat aaagaaatgg tgatggattt ctttaaagag aatcattccg
- 5701 ggatggcggt tcgcttcttt atggccggtt atcgactcga aggttga
-//
-LOCUS genome3_plasmi_2 1968 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..1968
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 1..582
- /locus_tag="PFKCIMHH_00009"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYP
- ADAAELLESLVLEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
- LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA
- SCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC"
- CDS 629..1936
- /gene="dctM"
- /locus_tag="PFKCIMHH_00010"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:O07838"
- /codon_start=1
- /transl_table=11
- /product="C4-dicarboxylate TRAP transporter large permease
- protein DctM"
- /translation="MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFD
- ISMFATAQKMFSSLDSFALLAVPFFVLSGVIMNSGGIAARLINFAKLFTGKLPGSLSY
- TNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPT
- TAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMAL
- KVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSIL
- LQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLII
- GAFMDIGPAILIFTPILLPIMAKLGVDPVHLGIIMIYNLAIGTITPPVGSGLYVGASV
- GKVKVEEVIKPLLPFYGAIIGVLLLITYIPEIILFLPRLLGIM"
-ORIGIN
- 1 atgtctacgc ttctctattt gcacggattc aacagttccc ctcgctcggc aaaagcgtgc
- 61 cagctaaaaa actggctggc ggagcgtcat ccgcatgttg agatgatcgt ccctcaacta
- 121 ccgccgtatc ctgccgatgc ggcggagttg ctggagtctc tcgtgcttga gcatggcggt
- 181 gcgccattag ggctggtagg atcgtcgctg ggtggttatt acgccacctg gctgtcgcaa
- 241 tgttttatgc tgccggctgt ggtggtgaat cccgccgtgc ggccctttga attactgacc
- 301 gactatctcg gtcagaacga gaacccctac accgggcagc aatatgtgct agagtctcgc
- 361 catatttatg atcttaaagt catgcagatt gacccgctgg aagcgccgga cctgatctgg
- 421 ctactgcaac agacgggcga tgaagtgctg gattaccgcc aggcggtggc atattacgcc
- 481 tcctgccgtc agacagtgac cgagggtggt aatcacgcat tcacgggctt cgaagattat
- 541 ttcaaccaga ttgtcgattt tcttggactg cacagttgct gacgcgtagc ggccggaatc
- 601 ttctcggaga ggcgcttctc tctcggagat gattgaccct atttttgcgt cctgtacgct
- 661 aattgccgtc tttgttgttt tactggccat gggcgcgcct atcgggatct gcatcgttat
- 721 cgcctctttc agcaccatga tgctggtact gcctttcgat atttcgatgt tcgccaccgc
- 781 gcaaaaaatg ttctccagcc tggacagttt tgccttgctg gccgtgccgt tcttcgtttt
- 841 gtccggggtg atcatgaata gcgggggaat tgccgcccgg ctgatcaatt ttgccaaact
- 901 gtttactggc aaactgcccg gttcgctctc ttataccaac atcgtcggca atatgatgtt
- 961 cggtgcaatt tccggatcgg caattgccgc ctcaacctcc atcggcggcg tgatggtgcc
- 1021 gatgagcgcg cgcgaaggtt acgatcgcgg ctttgcggcc gcggtgaata tcgcctccgc
- 1081 gccgacggga atgttaattc cgcccaccac ggcttttatc ctttatgcgc tggcaagcgg
- 1141 gggaacatcg attgccgctc tgttcgccgg cggtctggtc gcgggagtgc tgtggggcgt
- 1201 tggctgtatg ctggtcacgc tggtagtcgc taagcgtcga aattatcggg ttttcttcac
- 1261 cgtccaaaaa ggcatggcgc taaaagttgc cgttgaggcc attcccagcc tgttactgat
- 1321 cgtgattatc gtcggcggca ttgtgcaggg gattttcacc gccattgaag cctccgcgat
- 1381 tgccgtggtg tatacgttat tgctgacgat ggtgttttac cgcacgctga aaattaagga
- 1441 tttgccttcg attttgctcc agacagtggt aatgaccggg gtcatcatgt tcctgctggc
- 1501 aacctcttcg gcgatgtcct tctcaatgtc gatcaccaat attcctgcgg cgctgagcga
- 1561 tatgatcctc ggtatttccg ccaataaact ggttatcctg ttagtcatta ccgtcttttt
- 1621 gttgattatc ggcgcattta tggatatcgg tccggccatt ctgattttta ccccgattct
- 1681 gctgccgatc atggctaaac tgggcgtcga tccggtgcat ttgggcatta tcatgatcta
- 1741 taacctggcg attggcacca ttacgccgcc agttggcagt ggtttatatg tcggggcgag
- 1801 cgtcggtaag gtcaaagttg aggaagtgat taaaccgttg ctgccttttt acggcgcgat
- 1861 tatcggcgtt ctgttattaa ttacctacat tccggaaatc atactgttct taccccgtct
- 1921 actgggcatc atgtaaaccc gatggcgcgc agaggcgcga gttctgga
-//
-LOCUS genome3_plasmi_3 1102 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..1102
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 26..280
- /locus_tag="PFKCIMHH_00011"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MIINGKLIKAKDLAKAAGVSRSTVIKYYGISRENYERVATERRK
- LAFELRASGLKWKEVAEKMNTTKYSAIAYYRRYLALEKNK"
- CDS 323..1102
- /locus_tag="PFKCIMHH_00012"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:Q45619"
- /codon_start=1
- /transl_table=11
- /product="Insertion sequence IS5376 putative ATP-binding
- protein"
- /translation="MVELQHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLE
- HLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQIQSLRSLSFIERN
- ENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNR
- GVMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDA
- ALTSAMLDRILHHSHVVQIKGESYRLKQKRKAGVIAEANPE"
-ORIGIN
- 1 cacagggctt agaggcgcta tggcaatgat aattaatggg aaattaatta aagcaaaaga
- 61 cttagctaag gctgcaggtg tatctcgttc aacagtgatt aaatattacg gcattagccg
- 121 tgagaattac gaaagggtag caactgaaag aaggaagctt gcttttgaac taagagcatc
- 181 aggtttaaaa tggaaagaag ttgctgaaaa aatgaacacg acaaaatata gcgcaattgc
- 241 atattataga cgatatttag cattagagaa aaacaaataa caggcgctaa ggcggcgatc
- 301 ctagcgcgcg atcgcgcatg cgatggtcga actgcaacat caacggctga tggtgcttgc
- 361 cgaacagctc cagctggaca gtcttatcgg cgcagcgccg gcgctgtcgc aacaggcggt
- 421 ggatcaggaa tggagctaca tggacttcct ggagcacctg ttacatgagg agaaactggc
- 481 ccggcatcag cgtaaacagg cgatgtacac gcggatggca gccttcccgg cggtaaagac
- 541 gttcgaggag tacgacttca ccttcgccac cggcgctcct cagaagcaaa tccagtcgct
- 601 gcgatccctg agcttcatag agcgtaacga aaacatcgtg ttgctggggc catcgggcgt
- 661 gggaaaaacg catctggcga tagccatggg ctacgaagca gtacgggcgg gcatcaaggt
- 721 tcgcttcaca acagcagcgg acctgctgct acagctgtcc acttcacagc gtcagggccg
- 781 ttacaaaacg actctcaatc gtggtgtcat ggccccgaag ctgcttatca tcgatgaaat
- 841 aggttatctg ccgttcagtc aggaggaagc caagctgttc ttccaggtca tcgccaaacg
- 901 ttacgagaag agcgcgatga tcctgacctc caacctgccg ttcgggcagt gggatcagac
- 961 gttcgccggt gatgcagcgc tgacatcggc gatgctggac cggatcttac atcactcaca
- 1021 cgtcgtgcaa ataaaagggg aaagctatcg actgaagcag aaacgaaagg ccggggttat
- 1081 agctgaagct aatcctgagt aa
-//
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gff b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gff
deleted file mode 100644
index 46df1d19..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gff
+++ /dev/null
@@ -1,168 +0,0 @@
-##gff-version 3
-##sequence-region header_genome3_1 1 5747
-##sequence-region genome3_plasmi_2 1 1968
-##sequence-region genome3_plasmi_3 1 1102
-header_genome3_1 Prodigal:2.6 CDS 1 831 . + 0 ID=PFKCIMHH_00001;eC_number=3.5.1.28;Name=amiD_1;dbxref=COG:COG3023;gene=amiD_1;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P75820;locus_tag=PFKCIMHH_00001;product=N-acetylmuramoyl-L-alanine amidase AmiD
-header_genome3_1 Prodigal:2.6 CDS 880 1710 . + 0 ID=PFKCIMHH_00002;eC_number=3.5.1.28;Name=amiD_2;dbxref=COG:COG3023;gene=amiD_2;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P75820;locus_tag=PFKCIMHH_00002;product=N-acetylmuramoyl-L-alanine amidase AmiD
-header_genome3_1 Prodigal:2.6 CDS 1655 2128 . + 0 ID=PFKCIMHH_00003;eC_number=5.3.3.10;Name=hpcD;gene=hpcD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:Q05354;locus_tag=PFKCIMHH_00003;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-header_genome3_1 Prodigal:2.6 CDS 2172 2396 . + 0 ID=PFKCIMHH_00004;Name=pspB;gene=pspB;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P0AFM9;locus_tag=PFKCIMHH_00004;product=Phage shock protein B
-header_genome3_1 Prodigal:2.6 CDS 2425 3828 . + 0 ID=PFKCIMHH_00005;inference=ab initio prediction:Prodigal:2.6;locus_tag=PFKCIMHH_00005;product=hypothetical protein
-header_genome3_1 Prodigal:2.6 CDS 3863 4636 . + 0 ID=PFKCIMHH_00006;Name=hisP;dbxref=COG:COG4598;gene=hisP;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P02915;locus_tag=PFKCIMHH_00006;product=Histidine transport ATP-binding protein HisP
-header_genome3_1 Prodigal:2.6 CDS 4641 5432 . + 0 ID=PFKCIMHH_00007;eC_number=2.1.1.228;Name=trmD;dbxref=COG:COG0336;gene=trmD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P0A873;locus_tag=PFKCIMHH_00007;product=tRNA (guanine-N(1)-)-methyltransferase
-header_genome3_1 Prodigal:2.6 CDS 5460 5747 . + 0 ID=PFKCIMHH_00008;inference=ab initio prediction:Prodigal:2.6;locus_tag=PFKCIMHH_00008;product=hypothetical protein
-genome3_plasmi_2 Prodigal:2.6 CDS 1 582 . + 0 ID=PFKCIMHH_00009;inference=ab initio prediction:Prodigal:2.6;locus_tag=PFKCIMHH_00009;product=hypothetical protein
-genome3_plasmi_2 Prodigal:2.6 CDS 629 1936 . + 0 ID=PFKCIMHH_00010;Name=dctM;dbxref=COG:COG1593;gene=dctM;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:O07838;locus_tag=PFKCIMHH_00010;product=C4-dicarboxylate TRAP transporter large permease protein DctM
-genome3_plasmi_3 Prodigal:2.6 CDS 26 280 . + 0 ID=PFKCIMHH_00011;inference=ab initio prediction:Prodigal:2.6;locus_tag=PFKCIMHH_00011;product=hypothetical protein
-genome3_plasmi_3 Prodigal:2.6 CDS 323 1102 . + 0 ID=PFKCIMHH_00012;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:Q45619;locus_tag=PFKCIMHH_00012;product=Insertion sequence IS5376 putative ATP-binding protein
-##FASTA
->header_genome3_1
-ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGAGTCCGG
-GAGCGGCGAGATTCCGGGCAGAGGAGGCGGCTATAGCGGATGAGAGCGCTACTGTGGCTG
-GTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAG
-GGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTG
-GTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAAC
-GTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATC
-TGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGC
-GCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATG
-TCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCG
-TTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCG
-GATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCG
-GCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGC
-GCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTAT
-GAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATG
-CACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAA
-GCATTACTGGAGAAGTACGGCCAGGATTAACAGGGCGCGGTATCGCGAGGACTCTCTCTT
-CGAGGACATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTT
-ACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGG
-CGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGA
-TTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCA
-GGAAGTCGGCGAAATGCTGTTCGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAA
-CCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACA
-AAACAACGTACACGCGTTATTTAAATAGCCCGAGTATTAGCGCGCGGCGGCGCTATAGGC
-GCGCTATAGGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTG
-TGTTACCGATTTGGCTGTGGCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGC
-AAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGACGCGCAACGTATGCGCGAGCGCA
-TTCAGGCGCTGGAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTAACGAG
-AGTCTCGGAGGAGCGGCGCTCTGGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTG
-ACGGCAGGTTCTGCGCTTGCTGTTCTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGT
-GAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTC
-AAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAAT
-ATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGT
-GGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGC
-GGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTG
-GCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTGGTAAGGAACCGCAGGTG
-ATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGC
-CAGGGATTTCATAACCAAATGGACGGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTA
-CAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGATATCCTGATTTCCGAT
-CATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGG
-CTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACTTTGTG
-GTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACAT
-TTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGT
-ATTGATAACGCAACGATCGCAATTTATGGCTGTGATAATTTCGTCATTGATAATATTGAT
-ATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCA
-ATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAA
-TTACGCGGCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTA
-CGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTCCTGCGTAAT
-ATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGT
-AAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTT
-CATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACC
-GTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACGCGTCTGCGCG
-CGCGGAGAGAGGCTCTCAGGACATGTCAGAAAATAAATTACACGTTATCGATTTGCACAA
-ACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGAGATGT
-GATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTT
-CCTCGAAAAACCGAGCGAAGACGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCG
-CGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCG
-CCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGT
-GATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTT
-GAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCT
-CTCCGGTGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGT
-TTTACTGTTCGATGAACCCACTTCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCG
-CATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGG
-CTTCGTTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGA
-GGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAA
-AGGCTCGCTGAAATAACCGGATGCGCGCGATATATCGGCGATGCGTGTTTATTGGCATCG
-TTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAG
-TAAAAAATGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGC
-ACCGTACCGTGGACGATCGTCCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAAC
-CCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTT
-ATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATC
-AGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCG
-AAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAA
-TGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGAGTTCTGGGGCATGAAGCATCAG
-CAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAG
-TGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTC
-GCTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAA
-ACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCAC
-AACAGCAGCATAAACATGATGGGATGGCATAGCCGGCTCTGCGAGAGAGGAGCGCTCGCA
-TGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATATAGCG
-CGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACAC
-ACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGA
-CGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCG
-GGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA
->genome3_plasmi_2
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTA
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACGCGTAGCGGCCGGAATC
-TTCTCGGAGAGGCGCTTCTCTCTCGGAGATGATTGACCCTATTTTTGCGTCCTGTACGCT
-AATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTAT
-CGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGC
-GCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTT
-GTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGATCAATTTTGCCAAACT
-GTTTACTGGCAAACTGCCCGGTTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTT
-CGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCC
-GATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGC
-GCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGG
-GGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGT
-TGGCTGTATGCTGGTCACGCTGGTAGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCAC
-CGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGTTACTGAT
-CGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGAT
-TGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGA
-TTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGC
-AACCTCTTCGGCGATGTCCTTCTCAATGTCGATCACCAATATTCCTGCGGCGCTGAGCGA
-TATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTT
-GTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCT
-GCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTGGGCATTATCATGATCTA
-TAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAG
-CGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGAT
-TATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCATACTGTTCTTACCCCGTCT
-ACTGGGCATCATGTAAACCCGATGGCGCGCAGAGGCGCGAGTTCTGGA
->genome3_plasmi_3
-CACAGGGCTTAGAGGCGCTATGGCAATGATAATTAATGGGAAATTAATTAAAGCAAAAGA
-CTTAGCTAAGGCTGCAGGTGTATCTCGTTCAACAGTGATTAAATATTACGGCATTAGCCG
-TGAGAATTACGAAAGGGTAGCAACTGAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATC
-AGGTTTAAAATGGAAAGAAGTTGCTGAAAAAATGAACACGACAAAATATAGCGCAATTGC
-ATATTATAGACGATATTTAGCATTAGAGAAAAACAAATAACAGGCGCTAAGGCGGCGATC
-CTAGCGCGCGATCGCGCATGCGATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGC
-CGAACAGCTCCAGCTGGACAGTCTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGT
-GGATCAGGAATGGAGCTACATGGACTTCCTGGAGCACCTGTTACATGAGGAGAAACTGGC
-CCGGCATCAGCGTAAACAGGCGATGTACACGCGGATGGCAGCCTTCCCGGCGGTAAAGAC
-GTTCGAGGAGTACGACTTCACCTTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCT
-GCGATCCCTGAGCTTCATAGAGCGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGT
-GGGAAAAACGCATCTGGCGATAGCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGT
-TCGCTTCACAACAGCAGCGGACCTGCTGCTACAGCTGTCCACTTCACAGCGTCAGGGCCG
-TTACAAAACGACTCTCAATCGTGGTGTCATGGCCCCGAAGCTGCTTATCATCGATGAAAT
-AGGTTATCTGCCGTTCAGTCAGGAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACG
-TTACGAGAAGAGCGCGATGATCCTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGAC
-GTTCGCCGGTGATGCAGCGCTGACATCGGCGATGCTGGACCGGATCTTACATCACTCACA
-CGTCGTGCAAATAAAAGGGGAAAGCTATCGACTGAAGCAGAAACGAAAGGCCGGGGTTAT
-AGCTGAAGCTAATCCTGAGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.log b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.log
deleted file mode 100644
index 5b897f7f..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.log
+++ /dev/null
@@ -1,121 +0,0 @@
-[13:18:48] This is prokka 1.14-dev
-[13:18:48] Written by Torsten Seemann <torsten.seemann@gmail.com>
-[13:18:48] Homepage is https://github.com/tseemann/prokka
-[13:18:48] Local time is Tue Feb 12 13:18:48 2019
-[13:18:48] You are aperrin
-[13:18:48] Operating system is darwin
-[13:18:48] You have BioPerl 1.006924
-[13:18:48] System has 8 cores.
-[13:18:48] Will use maximum of 1 cores.
-[13:18:48] Annotating as >>> Bacteria <<<
-[13:18:48] Generating locus_tag from 'Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna' contents.
-[13:18:48] Setting --locustag PFKCIMHH from MD5 9f4c2611ce3f44c6b2e6fb97579c5725
-[13:18:48] Creating new output folder: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes
-[13:18:48] Running: mkdir -p Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes
-[13:18:48] Using filename prefix: EXAM.1216.00002.XXX
-[13:18:48] Setting HMMER_NCPU=1
-[13:18:48] Writing log to: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.log
-[13:18:48] Command: /usr/local/bin/prokka --outdir Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes --cpus 1 --prefix EXAM.1216.00002 Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
-[13:18:48] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin
-[13:18:48] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common
-[13:18:48] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin
-[13:18:48] Looking for 'aragorn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/aragorn
-[13:18:48] Determined aragorn version is 1.2
-[13:18:48] Looking for 'barrnap' - found /usr/local/bin/barrnap
-[13:18:48] Determined barrnap version is 0.8
-[13:18:48] Looking for 'blastp' - found /Users/aperrin/Softwares/bin/blastp
-[13:18:48] Determined blastp version is 2.3
-[13:18:48] Looking for 'cmpress' - found /usr/local/bin/cmpress
-[13:18:48] Determined cmpress version is 1.1
-[13:18:48] Looking for 'cmscan' - found /usr/local/bin/cmscan
-[13:18:48] Determined cmscan version is 1.1
-[13:18:48] Looking for 'egrep' - found /usr/bin/egrep
-[13:18:48] Looking for 'find' - found /usr/bin/find
-[13:18:48] Looking for 'grep' - found /usr/bin/grep
-[13:18:48] Looking for 'hmmpress' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/hmmpress
-[13:18:48] Determined hmmpress version is 3.1
-[13:18:48] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
-[13:18:48] Determined hmmscan version is 3.1
-[13:18:48] Looking for 'java' - found /usr/bin/java
-[13:18:48] Looking for 'less' - found /usr/bin/less
-[13:18:48] Looking for 'makeblastdb' - found /Users/aperrin/Softwares/bin/makeblastdb
-[13:18:48] Determined makeblastdb version is 2.3
-[13:18:48] Looking for 'minced' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common/minced
-[13:18:48] Determined minced version is 2.0
-[13:18:48] Looking for 'parallel' - found /usr/local/bin/parallel
-[13:18:49] Determined parallel version is 20181022
-[13:18:49] Looking for 'prodigal' - found /usr/local/bin/prodigal
-[13:18:49] Determined prodigal version is 2.6
-[13:18:49] Looking for 'prokka-genbank_to_fasta_db' - found /Users/aperrin/Softwares/src/prokka/bin/prokka-genbank_to_fasta_db
-[13:18:49] Looking for 'sed' - found /usr/bin/sed
-[13:18:49] Looking for 'tbl2asn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/tbl2asn
-[13:18:49] Determined tbl2asn version is 25.6
-[13:18:49] Using genetic code table 11.
-[13:18:49] Loading and checking input file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna
-[13:18:49] Wrote 3 contigs totalling 8817 bp.
-[13:18:49] Predicting tRNAs and tmRNAs
-[13:18:49] Running: aragorn -l -gc11 -w Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.fna
-[13:18:49] Found 0 tRNAs
-[13:18:49] Predicting Ribosomal RNAs
-[13:18:49] Running Barrnap with 1 threads
-[13:18:49] Found 0 rRNAs
-[13:18:49] Skipping ncRNA search, enable with --rfam if desired.
-[13:18:49] Total of 0 tRNA + rRNA features
-[13:18:49] Searching for CRISPR repeats
-[13:18:49] Found 0 CRISPRs
-[13:18:49] Predicting coding sequences
-[13:18:49] Contigs total 8817 bp, so using meta mode
-[13:18:49] Running: prodigal -i Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.fna -c -m -g 11 -p meta -f sco -q
-[13:18:49] Found 12 CDS
-[13:18:49] Connecting features back to sequences
-[13:18:49] Not using genus-specific database. Try --usegenus to enable it.
-[13:18:49] Annotating CDS, please be patient.
-[13:18:49] Will use 1 CPUs for similarity searching.
-[13:18:49] There are still 12 unannotated CDS left (started with 12)
-[13:18:49] Will use blast to search against /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot with 1 CPUs
-[13:18:49] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/sprot\.faa | parallel --gnu --plain -j 1 --block 1443 --recstart '>' --pipe blastp -query - -db /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/sprot\.blast 2> /dev/null
-[13:18:50] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/sprot.faa
-[13:18:50] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/sprot.blast
-[13:18:50] There are still 4 unannotated CDS left (started with 12)
-[13:18:50] Will use hmmer3 to search against /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm with 1 CPUs
-[13:18:50] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 1 --block 427 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm /dev/stdin > Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.hmmer3 2> /dev/null
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/HAMAP.hmm.faa
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/HAMAP.hmm.hmmer3
-[13:18:51] Labelling remaining 4 proteins as 'hypothetical protein'
-[13:18:51] Possible /pseudo 'N-acetylmuramoyl-L-alanine amidase AmiD' at header_genome3_1 position 880
-[13:18:51] Found 6 unique /gene codes.
-[13:18:51] Fixed 2 duplicate /gene - amiD_1 amiD_2
-[13:18:51] Fixed 1 colliding /gene names.
-[13:18:51] Adding /locus_tag identifiers
-[13:18:51] Assigned 12 locus_tags to CDS and RNA features.
-[13:18:51] Writing outputs to Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/
-[13:18:51] Generating annotation statistics file
-[13:18:51] Generating Genbank and Sequin files
-[13:18:51] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka' -Z Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.err -i Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.fsa 2> /dev/null
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/errorsummary.val
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.dr
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fixedproducts
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.ecn
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.val
-[13:18:51] Repairing broken .GBK output that tbl2asn produces...
-[13:18:51] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.gbf > Examples\/1\-res\-Annotate\/tmp_files\/genome3\-chromo\.fst\-all\.fna\-split5N\.fna\-prokkaRes\/EXAM\.1216\.00002\.gbk
-[13:18:51] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gbf
-[13:18:51] Output files:
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.log
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.ffn
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gbk
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fsa
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.faa
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.txt
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.gff
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tbl
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.sqn
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tsv
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.fna
-[13:18:51] Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.err
-[13:18:51] Annotation finished successfully.
-[13:18:51] Walltime used: 0.05 minutes
-[13:18:51] If you use this result please cite the Prokka paper:
-[13:18:51] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
-[13:18:51] Type 'prokka --citation' for more details.
-[13:18:51] Share and enjoy!
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.sqn b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.sqn
deleted file mode 100644
index 28bbce5b..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.sqn
+++ /dev/null
@@ -1,1159 +0,0 @@
-Seq-entry ::= set {
- class genbank ,
- seq-set {
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "header_genome3_1" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 5747 ,
- seq-data
- iupacna "ATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGTTGCTGTTAACAGGCTGCGCGA
-GCGAAAAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTA
-AAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGC
-ATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGG
-CCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATC
-GCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAG
-CGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAG
-ACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGG
-CGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCT
-ATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGC
-AATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGAG
-TCCGGGAGCGGCGAGATTCCGGGCAGAGGAGGCGGCTATAGCGGATGAGAGCGCTACTGTGGCTGGTGGGTCTTGCGT
-TGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATGAAGAGGGATATCAGCTTGATACCCGACATCGGGCGC
-AGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAA
-CGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAAC
-TGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTA
-TTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAA
-TTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGG
-ATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCACAGGGGATTGGCGCCT
-GGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTG
-CGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAACAGCGGGTGATTATGGCGTTCC
-AGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGA
-AGTACGGCCAGGATTAACAGGGCGCGGTATCGCGAGGACTCTCTCTTCGAGGACATGCCGCACTTTATTGCTGAATGT
-ACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATT
-TTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG
-TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTCGGG
-CTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCA
-ACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCCGAGTATTAGCGCGCGGCGGCGCTATAGGCG
-CGCTATAGGCATGAGCGCGCTATTTCTGGCCATCCCGTTAACCATTTTTGTGTTGTTTGTGTTACCGATTTGGCTGTG
-GCTGCATTACAGCAACCGCGCCGGTCGGGGAGAACTGTCGCAAAGCGAGCAGCAACGCTTACTGCAACTCACAGACGA
-CGCGCAACGTATGCGCGAGCGCATTCAGGCGCTGGAAGACATTCTTGATGCAGAGCATCCGAACTGGAGAGAGCGCTA
-ACGAGAGTCTCGGAGGAGCGGCGCTCTGGATGCCCGCGACTAAATTCTCCCGACGTACCCTCCTGACGGCAGGTTCTG
-CGCTTGCTGTTCTTCCTTTCCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATT
-ATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGG
-TGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATG
-GCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGG
-ATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGGCGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGTG
-GTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCC
-AGGGATTTCATAACCAAATGGACGGCGCGAGGATTACGCATAGCCGCTTTAGCGATTTACAGGGGGACGCCATTGAGT
-GGAATGTCGCGATTCACGACCGCGATATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAA
-TCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGACCAGGCAGTAAAAAACT
-TTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTTGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCA
-ATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCAATTTATGGCT
-GTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCCGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAA
-AATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCG
-GCATTCAAATTTCCTCCGGCAACACCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAAC
-TGCATAATCAACCGCAGCACCTCTTCCTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAA
-TGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTC
-ATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGA
-ATTTTTCGCTGCCGAAGCGGGGAGGGTAACGCGTCTGCGCGCGCGGAGAGAGGCTCTCAGGACATGTCAGAAAATAAA
-TTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGCTGCAGGCCCGCGCCGGA
-GATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCG
-AGCGAAGACGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGAT
-AAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTG
-CTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATAT
-CTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTTCATCTCTCCGGTGGCCAACAGCAGCGCGTT
-TCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACTTCGGCGCTCGATCCTGAACTG
-GTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGC
-TTCGTTCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTG
-TTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACCGGATGCGCGCGATATATCG
-GCGATGCGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCG
-GGCAGTAAAAAATGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCACGCATGACCGGCACCGTACCGTGGA
-CGATCGTCCTTACGGCGGCGGACCAGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGC
-CGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCT
-GGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGA
-CGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCG
-GTTTATACCGGGAGTTCTGGGGCATGAAGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCA
-CTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCTGAGATACGTCG
-CTGGCGTTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGA
-GCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCCGGC
-TCTGCGAGAGAGGAGCGCTCGCATGAATAATCATTTTGGGAAAGGGTTAATGGCCGGGTTGCACGCGCCATATGCATA
-TAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGA
-AAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCTGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGT
-GATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGCCGGTTATCGACTCGAAGGTTGA" } } ,
- seq {
- id {
- local
- str "header_genome3_1_1" } ,
- descr {
- title "N-acetylmuramoyl-L-alanine amidase AmiD [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 276 ,
- seq-data
- ncbieaa "MRALLWLVGLALLLTGCASEKGIIDEEGYQLDTRHRAQAAYPRIKVLVIHYTAEN
-FDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGVKS
-FAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYT
-PVDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 9 ,
- data
- prot {
- name {
- "N-acetylmuramoyl-L-alanine amidase AmiD" } ,
- ec {
- "3.5.1.28" } } ,
- location
- int {
- from 0 ,
- to 275 ,
- id
- local
- str "header_genome3_1_1" } } } } } } ,
- seq {
- id {
- local
- str "header_genome3_1_2" } ,
- descr {
- title "N-acetylmuramoyl-L-alanine amidase AmiD [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 276 ,
- seq-data
- ncbieaa "MRALLWLVGLALLLTGCASEKGIIDEEGYQLDTRHRAQAAYPRIKVLVIHYTAEN
-FDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGVKS
-FAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYT
-PVDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 10 ,
- data
- prot {
- name {
- "N-acetylmuramoyl-L-alanine amidase AmiD" } ,
- ec {
- "3.5.1.28" } } ,
- location
- int {
- from 0 ,
- to 275 ,
- id
- local
- str "header_genome3_1_2" } } } } } } ,
- seq {
- id {
- local
- str "header_genome3_1_3" } ,
- descr {
- title "5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Genus
- species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 157 ,
- seq-data
- ncbieaa "MPKRRRLPKHYWRSTARINRARYREDSLFEDMPHFIAECTENIREQADLPGLFSK
-VNEALAASGIFPIGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLA
-LSFEIAELHPTLNYKQNNVHALFK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 11 ,
- data
- prot {
- name {
- "5-carboxymethyl-2-hydroxymuconate Delta-isomerase" } ,
- ec {
- "5.3.3.10" } } ,
- location
- int {
- from 0 ,
- to 156 ,
- id
- local
- str "header_genome3_1_3" } } } } } } ,
- seq {
- id {
- local
- str "header_genome3_1_4" } ,
- descr {
- title "Phage shock protein B [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 74 ,
- seq-data
- ncbieaa "MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLLQLTDDAQRMRE
-RIQALEDILDAEHPNWRER" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 12 ,
- data
- prot {
- name {
- "Phage shock protein B" } } ,
- location
- int {
- from 0 ,
- to 73 ,
- id
- local
- str "header_genome3_1_4" } } } } } } ,
- seq {
- id {
- local
- str "header_genome3_1_5" } ,
- descr {
- title "hypothetical protein PFKCIMHH_00005 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 467 ,
- seq-data
- ncbieaa "MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQA
-FADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTLDVRGSDCVIKGVA
-MSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILIS
-DHVIERIDCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSK
-NAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISSGNTPSFV
-AITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDI
-DRINHQTVNVEAVNFSLPKRGG" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 13 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 466 ,
- id
- local
- str "header_genome3_1_5" } } } } } } ,
- seq {
- id {
- local
- str "header_genome3_1_6" } ,
- descr {
- title "Histidine transport ATP-binding protein HisP [Genus
- species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 257 ,
- seq-data
- ncbieaa "MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE
-KPSEDAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL
-KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE
-MGFVRHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 14 ,
- data
- prot {
- name {
- "Histidine transport ATP-binding protein HisP" } } ,
- location
- int {
- from 0 ,
- to 256 ,
- id
- local
- str "header_genome3_1_6" } } } } } } ,
- seq {
- id {
- local
- str "header_genome3_1_7" } ,
- descr {
- title "tRNA (guanine-N(1)-)-methyltransferase [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 263 ,
- seq-data
- ncbieaa "MRAIYRRCVFIGIVSLFPEMFRAITDYGVTGRAVKNGLLNIQSWSPRDFTHDRHR
-TVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDERVIQT
-EIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAE
-IRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 15 ,
- data
- prot {
- name {
- "tRNA (guanine-N(1)-)-methyltransferase" } ,
- ec {
- "2.1.1.228" } } ,
- location
- int {
- from 0 ,
- to 262 ,
- id
- local
- str "header_genome3_1_7" } } } } } } ,
- seq {
- id {
- local
- str "header_genome3_1_8" } ,
- descr {
- title "hypothetical protein PFKCIMHH_00008 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 95 ,
- seq-data
- ncbieaa "MNNHFGKGLMAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAW
-EAGILTRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 16 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 94 ,
- id
- local
- str "header_genome3_1_8" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 1 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "header_genome3_1_1" ,
- location
- int {
- from 0 ,
- to 830 ,
- strand plus ,
- id
- local
- str "header_genome3_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P75820" } } ,
- xref {
- {
- data
- gene {
- locus "amiD_1" ,
- locus-tag "PFKCIMHH_00001" } } } } ,
- {
- id
- local
- id 2 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "header_genome3_1_2" ,
- location
- int {
- from 879 ,
- to 1709 ,
- strand plus ,
- id
- local
- str "header_genome3_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P75820" } } ,
- xref {
- {
- data
- gene {
- locus "amiD_2" ,
- locus-tag "PFKCIMHH_00002" } } } } ,
- {
- id
- local
- id 3 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "header_genome3_1_3" ,
- location
- int {
- from 1654 ,
- to 2127 ,
- strand plus ,
- id
- local
- str "header_genome3_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:Q05354" } } ,
- xref {
- {
- data
- gene {
- locus "hpcD" ,
- locus-tag "PFKCIMHH_00003" } } } } ,
- {
- id
- local
- id 4 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "header_genome3_1_4" ,
- location
- int {
- from 2171 ,
- to 2395 ,
- strand plus ,
- id
- local
- str "header_genome3_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P0AFM9" } } ,
- xref {
- {
- data
- gene {
- locus "pspB" ,
- locus-tag "PFKCIMHH_00004" } } } } ,
- {
- id
- local
- id 5 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "header_genome3_1_5" ,
- location
- int {
- from 2424 ,
- to 3827 ,
- strand plus ,
- id
- local
- str "header_genome3_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "PFKCIMHH_00005" } } } } ,
- {
- id
- local
- id 6 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "header_genome3_1_6" ,
- location
- int {
- from 3862 ,
- to 4635 ,
- strand plus ,
- id
- local
- str "header_genome3_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P02915" } } ,
- xref {
- {
- data
- gene {
- locus "hisP" ,
- locus-tag "PFKCIMHH_00006" } } } } ,
- {
- id
- local
- id 7 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "header_genome3_1_7" ,
- location
- int {
- from 4640 ,
- to 5431 ,
- strand plus ,
- id
- local
- str "header_genome3_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P0A873" } } ,
- xref {
- {
- data
- gene {
- locus "trmD" ,
- locus-tag "PFKCIMHH_00007" } } } } ,
- {
- id
- local
- id 8 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "header_genome3_1_8" ,
- location
- int {
- from 5459 ,
- to 5746 ,
- strand plus ,
- id
- local
- str "header_genome3_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "PFKCIMHH_00008" } } } } } } } } ,
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "genome3_plasmi_2" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 1968 ,
- seq-data
- iupacna "ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAG
-CGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTTGAGATGATCGTCCCTCAACTACCGCCGTATCCTG
-CCGATGCGGCGGAGTTGCTGGAGTCTCTCGTGCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGG
-GTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTG
-AATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTT
-ATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAG
-TGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCA
-CGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACGCGTAGCGGCCGGAATCT
-TCTCGGAGAGGCGCTTCTCTCTCGGAGATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTT
-TTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTC
-GATATTTCGATGTTCGCCACCGCGCAAAAAATGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTC
-GTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGATCAATTTTGCCAAACTGTTTACTGGCAAA
-CTGCCCGGTTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCCGCC
-TCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAAT
-ATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACA
-TCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTA
-GTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATT
-CCCAGCCTGTTACTGATCGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATT
-GCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTC
-CAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCAATGTCGATCACC
-AATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTC
-TTTTTGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATG
-GCTAAACTGGGCGTCGATCCGGTGCATTTGGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCA
-GTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTT
-TACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCATACTGTTCTTACCCCGTCTACTGGGC
-ATCATGTAAACCCGATGGCGCGCAGAGGCGCGAGTTCTGGA" } } ,
- seq {
- id {
- local
- str "genome3_plasmi_2_1" } ,
- descr {
- title "hypothetical protein PFKCIMHH_00009 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 193 ,
- seq-data
- ncbieaa "MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLV
-LEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESRHIYDLKVMQIDPL
-EAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 19 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 192 ,
- id
- local
- str "genome3_plasmi_2_1" } } } } } } ,
- seq {
- id {
- local
- str "genome3_plasmi_2_2" } ,
- descr {
- title "C4-dicarboxylate TRAP transporter large permease protein
- DctM [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 435 ,
- seq-data
- ncbieaa "MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMF
-SSLDSFALLAVPFFVLSGVIMNSGGIAARLINFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMS
-AREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFT
-VQKGMALKVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFL
-LATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVHLGI
-IMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITYIPEIILFLPRLLGIM" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 20 ,
- data
- prot {
- name {
- "C4-dicarboxylate TRAP transporter large permease
- protein DctM" } } ,
- location
- int {
- from 0 ,
- to 434 ,
- id
- local
- str "genome3_plasmi_2_2" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 17 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome3_plasmi_2_1" ,
- location
- int {
- from 0 ,
- to 581 ,
- strand plus ,
- id
- local
- str "genome3_plasmi_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "PFKCIMHH_00009" } } } } ,
- {
- id
- local
- id 18 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome3_plasmi_2_2" ,
- location
- int {
- from 628 ,
- to 1935 ,
- strand plus ,
- id
- local
- str "genome3_plasmi_2" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:O07838" } } ,
- xref {
- {
- data
- gene {
- locus "dctM" ,
- locus-tag "PFKCIMHH_00010" } } } } } } } } ,
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "genome3_plasmi_3" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 1102 ,
- seq-data
- iupacna "CACAGGGCTTAGAGGCGCTATGGCAATGATAATTAATGGGAAATTAATTAAAGCA
-AAAGACTTAGCTAAGGCTGCAGGTGTATCTCGTTCAACAGTGATTAAATATTACGGCATTAGCCGTGAGAATTACGAA
-AGGGTAGCAACTGAAAGAAGGAAGCTTGCTTTTGAACTAAGAGCATCAGGTTTAAAATGGAAAGAAGTTGCTGAAAAA
-ATGAACACGACAAAATATAGCGCAATTGCATATTATAGACGATATTTAGCATTAGAGAAAAACAAATAACAGGCGCTA
-AGGCGGCGATCCTAGCGCGCGATCGCGCATGCGATGGTCGAACTGCAACATCAACGGCTGATGGTGCTTGCCGAACAG
-CTCCAGCTGGACAGTCTTATCGGCGCAGCGCCGGCGCTGTCGCAACAGGCGGTGGATCAGGAATGGAGCTACATGGAC
-TTCCTGGAGCACCTGTTACATGAGGAGAAACTGGCCCGGCATCAGCGTAAACAGGCGATGTACACGCGGATGGCAGCC
-TTCCCGGCGGTAAAGACGTTCGAGGAGTACGACTTCACCTTCGCCACCGGCGCTCCTCAGAAGCAAATCCAGTCGCTG
-CGATCCCTGAGCTTCATAGAGCGTAACGAAAACATCGTGTTGCTGGGGCCATCGGGCGTGGGAAAAACGCATCTGGCG
-ATAGCCATGGGCTACGAAGCAGTACGGGCGGGCATCAAGGTTCGCTTCACAACAGCAGCGGACCTGCTGCTACAGCTG
-TCCACTTCACAGCGTCAGGGCCGTTACAAAACGACTCTCAATCGTGGTGTCATGGCCCCGAAGCTGCTTATCATCGAT
-GAAATAGGTTATCTGCCGTTCAGTCAGGAGGAAGCCAAGCTGTTCTTCCAGGTCATCGCCAAACGTTACGAGAAGAGC
-GCGATGATCCTGACCTCCAACCTGCCGTTCGGGCAGTGGGATCAGACGTTCGCCGGTGATGCAGCGCTGACATCGGCG
-ATGCTGGACCGGATCTTACATCACTCACACGTCGTGCAAATAAAAGGGGAAAGCTATCGACTGAAGCAGAAACGAAAG
-GCCGGGGTTATAGCTGAAGCTAATCCTGAGTAA" } } ,
- seq {
- id {
- local
- str "genome3_plasmi_3_1" } ,
- descr {
- title "hypothetical protein PFKCIMHH_00011 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 84 ,
- seq-data
- ncbieaa "MIINGKLIKAKDLAKAAGVSRSTVIKYYGISRENYERVATERRKLAFELRASGLK
-WKEVAEKMNTTKYSAIAYYRRYLALEKNK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 23 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 83 ,
- id
- local
- str "genome3_plasmi_3_1" } } } } } } ,
- seq {
- id {
- local
- str "genome3_plasmi_3_2" } ,
- descr {
- title "Insertion sequence IS5376 putative ATP-binding protein
- [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 259 ,
- seq-data
- ncbieaa "MVELQHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARH
-QRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKV
-RFTTAADLLLQLSTSQRQGRYKTTLNRGVMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWD
-QTFAGDAALTSAMLDRILHHSHVVQIKGESYRLKQKRKAGVIAEANPE" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 24 ,
- data
- prot {
- name {
- "Insertion sequence IS5376 putative ATP-binding
- protein" } } ,
- location
- int {
- from 0 ,
- to 258 ,
- id
- local
- str "genome3_plasmi_3_2" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 21 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome3_plasmi_3_1" ,
- location
- int {
- from 25 ,
- to 279 ,
- strand plus ,
- id
- local
- str "genome3_plasmi_3" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "PFKCIMHH_00011" } } } } ,
- {
- id
- local
- id 22 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "genome3_plasmi_3_2" ,
- location
- int {
- from 322 ,
- to 1101 ,
- strand plus ,
- id
- local
- str "genome3_plasmi_3" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:Q45619" } } ,
- xref {
- {
- data
- gene {
- locus-tag "PFKCIMHH_00012" } } } } } } } } } }
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tbl b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tbl
deleted file mode 100644
index 834efec1..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tbl
+++ /dev/null
@@ -1,75 +0,0 @@
->Feature header_genome3_1
-1 831 CDS
- EC_number 3.5.1.28
- dbxref COG:COG3023
- gene amiD_1
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P75820
- locus_tag PFKCIMHH_00001
- product N-acetylmuramoyl-L-alanine amidase AmiD
-880 1710 CDS
- EC_number 3.5.1.28
- dbxref COG:COG3023
- gene amiD_2
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P75820
- locus_tag PFKCIMHH_00002
- product N-acetylmuramoyl-L-alanine amidase AmiD
-1655 2128 CDS
- EC_number 5.3.3.10
- gene hpcD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:Q05354
- locus_tag PFKCIMHH_00003
- product 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-2172 2396 CDS
- gene pspB
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P0AFM9
- locus_tag PFKCIMHH_00004
- product Phage shock protein B
-2425 3828 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag PFKCIMHH_00005
- product hypothetical protein
-3863 4636 CDS
- dbxref COG:COG4598
- gene hisP
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P02915
- locus_tag PFKCIMHH_00006
- product Histidine transport ATP-binding protein HisP
-4641 5432 CDS
- EC_number 2.1.1.228
- dbxref COG:COG0336
- gene trmD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P0A873
- locus_tag PFKCIMHH_00007
- product tRNA (guanine-N(1)-)-methyltransferase
-5460 5747 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag PFKCIMHH_00008
- product hypothetical protein
->Feature genome3_plasmi_2
-1 582 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag PFKCIMHH_00009
- product hypothetical protein
-629 1936 CDS
- dbxref COG:COG1593
- gene dctM
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:O07838
- locus_tag PFKCIMHH_00010
- product C4-dicarboxylate TRAP transporter large permease protein DctM
->Feature genome3_plasmi_3
-26 280 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag PFKCIMHH_00011
- product hypothetical protein
-323 1102 CDS
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:Q45619
- locus_tag PFKCIMHH_00012
- product Insertion sequence IS5376 putative ATP-binding protein
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tsv b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tsv
deleted file mode 100644
index 0afd4f8f..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.tsv
+++ /dev/null
@@ -1,13 +0,0 @@
-locus_tag ftype length_bp gene EC_number COG product
-PFKCIMHH_00001 CDS 831 amiD_1 3.5.1.28 COG3023 N-acetylmuramoyl-L-alanine amidase AmiD
-PFKCIMHH_00002 CDS 831 amiD_2 3.5.1.28 COG3023 N-acetylmuramoyl-L-alanine amidase AmiD
-PFKCIMHH_00003 CDS 474 hpcD 5.3.3.10 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-PFKCIMHH_00004 CDS 225 pspB Phage shock protein B
-PFKCIMHH_00005 CDS 1404 hypothetical protein
-PFKCIMHH_00006 CDS 774 hisP COG4598 Histidine transport ATP-binding protein HisP
-PFKCIMHH_00007 CDS 792 trmD 2.1.1.228 COG0336 tRNA (guanine-N(1)-)-methyltransferase
-PFKCIMHH_00008 CDS 288 hypothetical protein
-PFKCIMHH_00009 CDS 582 hypothetical protein
-PFKCIMHH_00010 CDS 1308 dctM COG1593 C4-dicarboxylate TRAP transporter large permease protein DctM
-PFKCIMHH_00011 CDS 255 hypothetical protein
-PFKCIMHH_00012 CDS 780 Insertion sequence IS5376 putative ATP-binding protein
diff --git a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.txt b/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.txt
deleted file mode 100644
index 89b53831..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome3-chromo.fst-all.fna-split5N.fna-prokkaRes/EXAM.1216.00002.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-organism: Genus species strain
-contigs: 3
-bases: 8817
-CDS: 12
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
deleted file mode 100644
index 85013c02..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
+++ /dev/null
@@ -1,2 +0,0 @@
->g4_1
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGGCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAGCAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATCGCGCGCATATCGCGCGCGATAGATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTATGCGTTTGTGCATATGACGCTGAAAATCGGTACCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGCATATGCGGCGCTCAGGAGCGCTAGCATGCTCGATAAACAGACCCATACCCTGATCGCCCAGCGACTTAATCAGGCTGAAAAACAGCGTGAACAAATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATCGCCGAAGGGCGCACGCTCAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGCGATATCCCCACCGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCTCGTTCACCCGCCCGGTGCCGGCGAGCAAGGGCGACACCTTCCATGTCGATTACGGCAACATGGGCGCGATCAGTTGCCGGTTTGTGTAACCAGATCCGCGCGCGCATATATATCGCGCGCATACGATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCTTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGACGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGATCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCTGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACAGAGCTCGCGCGATCGCGAATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGTTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACAGATACGCGCATGGCGAGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCCGAGATACGTCGCTGGCGCTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGATAGCGCTAGAGCGATGAATAATCATTTTGGGAAAGGGTTAATGGCTGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGTCGGTTATCGACTCGAAGGTTGACAGATGCGCGATCGATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTCGAGATGATCGTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACACGGATGCGCCATCGGCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATCGTCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACATTATTGTTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTTGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokka.log b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokka.log
deleted file mode 100644
index 2d216876..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokka.log
+++ /dev/null
@@ -1,119 +0,0 @@
-[13:18:51] This is prokka 1.14-dev
-[13:18:51] Written by Torsten Seemann <torsten.seemann@gmail.com>
-[13:18:51] Homepage is https://github.com/tseemann/prokka
-[13:18:51] Local time is Tue Feb 12 13:18:51 2019
-[13:18:51] You are aperrin
-[13:18:51] Operating system is darwin
-[13:18:51] You have BioPerl 1.006924
-[13:18:51] System has 8 cores.
-[13:18:51] Will use maximum of 1 cores.
-[13:18:51] Annotating as >>> Bacteria <<<
-[13:18:51] Generating locus_tag from 'Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna' contents.
-[13:18:51] Setting --locustag LIKMDGFN from MD5 5246d0f7b5f59e1da550241263d19049
-[13:18:51] Creating new output folder: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes
-[13:18:51] Running: mkdir -p Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes
-[13:18:51] Using filename prefix: GEN4.1111.00001.XXX
-[13:18:51] Setting HMMER_NCPU=1
-[13:18:51] Writing log to: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.log
-[13:18:51] Command: /usr/local/bin/prokka --outdir Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes --cpus 1 --prefix GEN4.1111.00001 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
-[13:18:51] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin
-[13:18:51] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common
-[13:18:51] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin
-[13:18:51] Looking for 'aragorn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/aragorn
-[13:18:51] Determined aragorn version is 1.2
-[13:18:51] Looking for 'barrnap' - found /usr/local/bin/barrnap
-[13:18:51] Determined barrnap version is 0.8
-[13:18:51] Looking for 'blastp' - found /Users/aperrin/Softwares/bin/blastp
-[13:18:51] Determined blastp version is 2.3
-[13:18:51] Looking for 'cmpress' - found /usr/local/bin/cmpress
-[13:18:51] Determined cmpress version is 1.1
-[13:18:51] Looking for 'cmscan' - found /usr/local/bin/cmscan
-[13:18:51] Determined cmscan version is 1.1
-[13:18:51] Looking for 'egrep' - found /usr/bin/egrep
-[13:18:51] Looking for 'find' - found /usr/bin/find
-[13:18:51] Looking for 'grep' - found /usr/bin/grep
-[13:18:51] Looking for 'hmmpress' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/hmmpress
-[13:18:51] Determined hmmpress version is 3.1
-[13:18:51] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
-[13:18:51] Determined hmmscan version is 3.1
-[13:18:51] Looking for 'java' - found /usr/bin/java
-[13:18:51] Looking for 'less' - found /usr/bin/less
-[13:18:51] Looking for 'makeblastdb' - found /Users/aperrin/Softwares/bin/makeblastdb
-[13:18:51] Determined makeblastdb version is 2.3
-[13:18:51] Looking for 'minced' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common/minced
-[13:18:51] Determined minced version is 2.0
-[13:18:51] Looking for 'parallel' - found /usr/local/bin/parallel
-[13:18:52] Determined parallel version is 20181022
-[13:18:52] Looking for 'prodigal' - found /usr/local/bin/prodigal
-[13:18:52] Determined prodigal version is 2.6
-[13:18:52] Looking for 'prokka-genbank_to_fasta_db' - found /Users/aperrin/Softwares/src/prokka/bin/prokka-genbank_to_fasta_db
-[13:18:52] Looking for 'sed' - found /usr/bin/sed
-[13:18:52] Looking for 'tbl2asn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/tbl2asn
-[13:18:52] Determined tbl2asn version is 25.6
-[13:18:52] Using genetic code table 11.
-[13:18:52] Loading and checking input file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
-[13:18:52] Wrote 1 contigs totalling 7134 bp.
-[13:18:52] Predicting tRNAs and tmRNAs
-[13:18:52] Running: aragorn -l -gc11 -w Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.fna
-[13:18:52] Found 0 tRNAs
-[13:18:52] Predicting Ribosomal RNAs
-[13:18:52] Running Barrnap with 1 threads
-[13:18:52] Found 0 rRNAs
-[13:18:52] Skipping ncRNA search, enable with --rfam if desired.
-[13:18:52] Total of 0 tRNA + rRNA features
-[13:18:52] Searching for CRISPR repeats
-[13:18:52] Found 0 CRISPRs
-[13:18:52] Predicting coding sequences
-[13:18:52] Contigs total 7134 bp, so using meta mode
-[13:18:52] Running: prodigal -i Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.fna -c -m -g 11 -p meta -f sco -q
-[13:18:52] Found 9 CDS
-[13:18:52] Connecting features back to sequences
-[13:18:52] Not using genus-specific database. Try --usegenus to enable it.
-[13:18:52] Annotating CDS, please be patient.
-[13:18:52] Will use 1 CPUs for similarity searching.
-[13:18:52] There are still 9 unannotated CDS left (started with 9)
-[13:18:52] Will use blast to search against /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot with 1 CPUs
-[13:18:52] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/sprot\.faa | parallel --gnu --plain -j 1 --block 1161 --recstart '>' --pipe blastp -query - -db /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/sprot\.blast 2> /dev/null
-[13:18:53] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/sprot.faa
-[13:18:53] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/sprot.blast
-[13:18:53] There are still 3 unannotated CDS left (started with 9)
-[13:18:53] Will use hmmer3 to search against /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm with 1 CPUs
-[13:18:53] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 1 --block 379 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm /dev/stdin > Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.hmmer3 2> /dev/null
-[13:18:53] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/HAMAP.hmm.faa
-[13:18:53] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/HAMAP.hmm.hmmer3
-[13:18:53] Labelling remaining 3 proteins as 'hypothetical protein'
-[13:18:53] Found 6 unique /gene codes.
-[13:18:53] Fixed 0 colliding /gene names.
-[13:18:53] Adding /locus_tag identifiers
-[13:18:53] Assigned 9 locus_tags to CDS and RNA features.
-[13:18:53] Writing outputs to Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/
-[13:18:53] Generating annotation statistics file
-[13:18:53] Generating Genbank and Sequin files
-[13:18:53] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka' -Z Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.err -i Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.fsa 2> /dev/null
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/errorsummary.val
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.dr
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fixedproducts
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.ecn
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.val
-[13:18:54] Repairing broken .GBK output that tbl2asn produces...
-[13:18:54] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.gbf > Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.gbk
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gbf
-[13:18:54] Output files:
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fsa
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.faa
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.log
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.ffn
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gbk
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gff
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tbl
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.sqn
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tsv
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fna
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.err
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.txt
-[13:18:54] Annotation finished successfully.
-[13:18:54] Walltime used: 0.05 minutes
-[13:18:54] If you use this result please cite the Prokka paper:
-[13:18:54] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
-[13:18:54] Type 'prokka --citation' for more details.
-[13:18:54] Share and enjoy!
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.err b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.err
deleted file mode 100644
index f57bb0e6..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.err
+++ /dev/null
@@ -1,102 +0,0 @@
-Discrepancy Report Results
-
-Summary
-FATAL: MISSING_PROTEIN_ID:9 proteins have invalid IDs.
-DISC_SOURCE_QUALS_ASNDISC:strain (all present, all unique)
-DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all unique)
-DISC_FEATURE_COUNT:CDS: 9 present
-DISC_COUNT_NUCLEOTIDES:1 nucleotide Bioseqs are present
-FEATURE_LOCATION_CONFLICT:9 features have inconsistent gene locations.
-DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
-ONCALLER_COMMENT_PRESENT:1 comment descriptors were found (all same)
-MISSING_GENOMEASSEMBLY_COMMENTS:1 bioseqs are missing GenomeAssembly structured comments
-MOLTYPE_NOT_MRNA:1 molecule types are not set as mRNA.
-TECHNIQUE_NOT_TSA:1 technique are not set as TSA
-MISSING_STRUCTURED_COMMENT:1 sequences do not include structured comments.
-MISSING_PROJECT:10 sequences do not include project.
-DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
-
-
-Detailed Report
-
-FATAL: DiscRep_ALL:MISSING_PROTEIN_ID::9 proteins halid Ivalid IDs.
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_1 (length 276)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_2 (length 126)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_3 (length 267)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_4 (length 467)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_5 (length 257)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_6 (length 255)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_7 (length 86)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_8 (length 193)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_9 (length 360)
-
-DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all unique)
-DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::1 sources have unique values for strain
-DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all unique)
-DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::1 sources have unique values for taxname
-DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 9 present
-DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::1 nucleotide Bioseqs are present
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1 (length 7134)
-
-DiscRep_ALL:FEATURE_LOCATION_CONFLICT::9 features have inconsistent gene locations.
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS N-acetylmuramoyl-L-alanine amidase AmiD g4_1:1-831 LIKMDGFN_00001
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS 5-carboxymethyl-2-hydroxymuconate Delta-isomerase g4_1:861-1241 LIKMDGFN_00002
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS 2-oxo-hept-4-ene-1,7-dioate hydratase g4_1:1271-2074 LIKMDGFN_00003
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS hypothetical protein g4_1:2111-3514 LIKMDGFN_00004
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS Histidine transport ATP-binding protein HisP g4_1:3535-4308 LIKMDGFN_00005
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS tRNA (guanine-N(1)-)-methyltransferase g4_1:4327-5094 LIKMDGFN_00006
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS hypothetical protein g4_1:5138-5398 LIKMDGFN_00007
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS hypothetical protein g4_1:5413-5994 LIKMDGFN_00008
-
-DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:CDS C4-dicarboxylate TRAP transporter large permease protein DctM g4_1:6052-7134 LIKMDGFN_00009
-
-DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
-
-DiscRep_ALL:ONCALLER_COMMENT_PRESENT::1 comment descriptors were found (all same)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1:Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka
-
-DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::1 bioseqs are missing GenomeAssembly structured comments
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1 (length 7134)
-
-DiscRep_ALL:MOLTYPE_NOT_MRNA::1 molecule types are not set as mRNA.
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1 (length 7134)
-
-DiscRep_ALL:TECHNIQUE_NOT_TSA::1 technique are not set as TSA
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1 (length 7134)
-
-DiscRep_ALL:MISSING_STRUCTURED_COMMENT::1 sequences do not include structured comments.
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1 (length 7134)
-
-DiscRep_ALL:MISSING_PROJECT::10 sequences do not include project.
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1 (length 7134)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_1 (length 276)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_2 (length 126)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_3 (length 267)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_4 (length 467)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_5 (length 257)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_6 (length 255)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_7 (length 86)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_8 (length 193)
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1_9 (length 360)
-
-DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
-DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
-DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::1 Molinfos are missing field technique
-Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001:g4_1 (length 7134)
-
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.faa b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.faa
deleted file mode 100644
index a9dac922..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.faa
+++ /dev/null
@@ -1,52 +0,0 @@
->LIKMDGFN_00001 N-acetylmuramoyl-L-alanine amidase AmiD
-MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAENFDVSL
-ATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIEL
-ENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPR
-FPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATVLALLSRYGYEVKADMTAREQQR
-VIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
->LIKMDGFN_00002 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADGKHDYA
-FVHMTLKIGTGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNN
-VHALFK
->LIKMDGFN_00003 2-oxo-hept-4-ene-1,7-dioate hydratase
-MLDKQTHTLIAQRLNQAEKQREQIRAVSLDYPNITIEDAYAVQREWVNIKIAEGRTLKGH
-KIGLTSKAMQASSQISEPDYGALLDDMFFHDGGDIPTDRFIVPRIEVELAFVLAKPLRGP
-HCTLFDVYNATDYVIPALELIDARSHNIDPETQRPRKVFDTISDNAANAGVILGGRPIKP
-DELDLRWISALLYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSF
-TRPVPASKGDTFHVDYGNMGAISCRFV
->LIKMDGFN_00004 hypothetical protein
-MPVNKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQAFADGQ
-TVVLPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTL
-DVRGSDCVIKGVTMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMD
-GARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERIDCTNGKINWGIGIGLAGSTYDN
-SYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSKNAGIDNATIAI
-YGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISS
-GNIPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFM
-ARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
->LIKMDGFN_00005 Histidine transport ATP-binding protein HisP
-MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG
-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV
-LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT
-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF
-GNPQSPRLQQFLKGSLK
->LIKMDGFN_00006 tRNA (guanine-N(1)-)-methyltransferase
-MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGM
-LMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDE
-RVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPH
-YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF
-KTEHAQQQHKHDGMA
->LIKMDGFN_00007 hypothetical protein
-MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRYGLDKE
-MVMDFFKENHSGMAVRFFMVGYRLEG
->LIKMDGFN_00008 hypothetical protein
-MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLVLEHGG
-APLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESR
-HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDY
-FNQIVDFLGLHSC
->LIKMDGFN_00009 C4-dicarboxylate TRAP transporter large permease protein DctM
-MNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMSAR
-EGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFAGGLVAGVLWGVGCML
-VTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVY
-TLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILG
-ISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVHFGIIMIYNLAI
-GTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.ffn b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.ffn
deleted file mode 100644
index 40721d61..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.ffn
+++ /dev/null
@@ -1,128 +0,0 @@
->LIKMDGFN_00001 N-acetylmuramoyl-L-alanine amidase AmiD
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAGCAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAA
->LIKMDGFN_00002 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGC
-CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATC
-CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTATGCG
-TTTGTGCATATGACGCTGAAAATCGGTACCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC
-GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT
-CTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAAC
-GTACACGCGTTATTTAAATAG
->LIKMDGFN_00003 2-oxo-hept-4-ene-1,7-dioate hydratase
-ATGCTCGATAAACAGACCCATACCCTGATCGCCCAGCGACTTAATCAGGCTGAAAAACAG
-CGTGAACAAATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATGCCTAT
-GCCGTACAGCGTGAATGGGTCAATATCAAGATCGCCGAAGGGCGCACGCTCAAAGGCCAC
-AAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGGATTAC
-GGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGCGATATCCCCACCGACCGTTTT
-ATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCGGCCCT
-CACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGGAACTG
-ATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGTTCGAC
-ACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCAAACCA
-GACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCGAAGAA
-ACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGGCGAAC
-AAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCTCGTTC
-ACCCGCCCGGTGCCGGCGAGCAAGGGCGACACCTTCCATGTCGATTACGGCAACATGGGC
-GCGATCAGTTGCCGGTTTGTGTAA
->LIKMDGFN_00004 hypothetical protein
-ATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTT
-CTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATT
-AAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAG
-ACCGTGGTCTTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCG
-GCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATT
-TTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTG
-GATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTC
-GCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGAC
-ATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGAC
-GGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAAT
-GTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGT
-ACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAAC
-AGTTATCCTGAAGATCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGAT
-TGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCC
-AAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATT
-TATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCTGGGATGCTC
-ATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAAC
-GCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCC
-GGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAA
-CTGCATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCAAACTTCAGCG
-ATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATG
-GCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAG
-AGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTT
-TCGCTGCCGAAGCGGGGAGGGTAA
->LIKMDGFN_00005 Histidine transport ATP-binding protein HisP
-ATGTCAGAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTG
-CTGAAAGGGGTATCGTTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCC
-GGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGC
-GCGATTATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAA
-GTGGCGGATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCAC
-TTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTA
-CTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGG
-ATTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGC
-GTTTCTATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACA
-TCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAA
-GAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCG
-CACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTC
-GGCAATCCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAA
->LIKMDGFN_00006 tRNA (guanine-N(1)-)-methyltransferase
-GTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGG
-GTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCTCGCGAC
-TTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGGGGATG
-TTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAA
-GGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGC
-GAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTAGATGAG
-CGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTCAGCGGT
-GGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTG
-GGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCAC
-TATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCGGGAAAC
-CATGCCGAGATACGTCGCTGGCGCTTGAAACAGTCGCTGGGCCGAACCTGGCTTAGAAGA
-CCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTC
-AAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAG
->LIKMDGFN_00007 hypothetical protein
-ATGGCTGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCT
-GAGTATAAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGAT
-CGTCAACTTAGCGCGTGGGAGGCCGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAA
-ATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGTC
-GGTTATCGACTCGAAGGTTGA
->LIKMDGFN_00008 hypothetical protein
-ATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGC
-CAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTCGAGATGATCGTCCCTCAACTA
-CCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGT
-GCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAA
-TGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACC
-GACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTGCTAGAGTCTCGC
-CATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGATCTGG
-CTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCC
-TCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTAT
-TTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGA
->LIKMDGFN_00009 C4-dicarboxylate TRAP transporter large permease protein DctM
-ATGAATAGCGGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAA
-CTGCCCGGCTCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCC
-GGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGC
-GAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATG
-TTAATTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATT
-GCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTG
-GTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGC
-ATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATCGTC
-GGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTAT
-ACATTATTGTTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATT
-TTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCG
-ATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGT
-ATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGC
-GCATTTATGGATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATG
-GCTAAACTGGGCGTCGATCCGGTGCATTTTGGCATTATCATGATCTATAACCTGGCGATT
-GGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTC
-AAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTG
-TTATTAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATG
-TAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fna b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fna
deleted file mode 100644
index c9dacd18..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fna
+++ /dev/null
@@ -1,120 +0,0 @@
->g4_1
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAGCAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATCGC
-GCGCATATCGCGCGCGATAGATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCG
-AGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGA
-TTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTG
-ACGGTAAGCATGATTATGCGTTTGTGCATATGACGCTGAAAATCGGTACCGGGCGCAGCC
-TGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCG
-ACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGC
-TCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGCATATGCGGCGCTCAG
-GAGCGCTAGCATGCTCGATAAACAGACCCATACCCTGATCGCCCAGCGACTTAATCAGGC
-TGAAAAACAGCGTGAACAAATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGA
-AGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATCGCCGAAGGGCGCACGCT
-CAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGA
-ACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGCGATATCCCCAC
-CGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCT
-GCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGC
-GCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAA
-AGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCC
-CATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGT
-GATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTG
-GCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGG
-CGGCTCGTTCACCCGCCCGGTGCCGGCGAGCAAGGGCGACACCTTCCATGTCGATTACGG
-CAACATGGGCGCGATCAGTTGCCGGTTTGTGTAACCAGATCCGCGCGCGCATATATATCG
-CGCGCATACGATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGC
-GCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGAC
-CGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGC
-CGACGGACAGACCGTGGTCTTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGAT
-AACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGG
-ACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAA
-TGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTT
-TGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCAT
-TATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAA
-CCAAATGGACGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCAT
-TGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACG
-CATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCAC
-CTATGACAACAGTTATCCTGAAGATCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTAC
-CGGATCTGATTGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAA
-TGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAAC
-GATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGC
-TGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTT
-TAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCA
-AATTTCCTCCGGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGC
-TACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCA
-AACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGG
-TCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGA
-AAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGC
-AGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACAGAGCTCGCGCGATCGCGAATGTCA
-GAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAA
-GGGGTATCGTTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCC
-GGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATT
-ATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCG
-GATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAAC
-CTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGA
-TTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGAT
-GAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCT
-ATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCG
-CTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGC
-AAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCGCACGTT
-ATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAAT
-CCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACAGATACGCGCA
-TGGCGAGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGAT
-TACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCT
-CGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCG
-GGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCA
-GGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGC
-GTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTA
-GATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTC
-AGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGG
-GTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGT
-CCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCG
-GGAAACCATGCCGAGATACGTCGCTGGCGCTTGAAACAGTCGCTGGGCCGAACCTGGCTT
-AGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCG
-GAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGATAG
-CGCTAGAGCGATGAATAATCATTTTGGGAAAGGGTTAATGGCTGGGTTGCACGCGCCATA
-TGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATT
-GGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGC
-CGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGA
-GAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGTCGGTTATCGACTCGAAGGTTGACA
-GATGCGCGATCGATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCG
-GCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTCGAGATGATC
-GTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTT
-GAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACC
-TGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTT
-GAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTG
-CTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCG
-GACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTG
-GCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGC
-TTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACACGGA
-TGCGCCATCGGCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGC
-GGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGC
-TCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCA
-ATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTAC
-GATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCG
-CCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTG
-TTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTG
-GTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTA
-AAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATCGTCGGCGGCATT
-GTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACATTATTG
-TTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAG
-ACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTC
-TCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCC
-AATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATG
-GATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTG
-GGCGTCGATCCGGTGCATTTTGGCATTATCATGATCTATAACCTGGCGATTGGCACCATT
-ACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAG
-GAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATT
-ACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fsa b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fsa
deleted file mode 100644
index 79f8dbb4..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fsa
+++ /dev/null
@@ -1,120 +0,0 @@
->g4_1 [gcode=11] [organism=Genus species] [strain=strain]
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAGCAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATCGC
-GCGCATATCGCGCGCGATAGATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCG
-AGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGA
-TTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTG
-ACGGTAAGCATGATTATGCGTTTGTGCATATGACGCTGAAAATCGGTACCGGGCGCAGCC
-TGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCG
-ACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGC
-TCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGCATATGCGGCGCTCAG
-GAGCGCTAGCATGCTCGATAAACAGACCCATACCCTGATCGCCCAGCGACTTAATCAGGC
-TGAAAAACAGCGTGAACAAATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGA
-AGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATCGCCGAAGGGCGCACGCT
-CAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGA
-ACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGCGATATCCCCAC
-CGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCT
-GCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGC
-GCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAA
-AGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCC
-CATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGT
-GATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTG
-GCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGG
-CGGCTCGTTCACCCGCCCGGTGCCGGCGAGCAAGGGCGACACCTTCCATGTCGATTACGG
-CAACATGGGCGCGATCAGTTGCCGGTTTGTGTAACCAGATCCGCGCGCGCATATATATCG
-CGCGCATACGATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGC
-GCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGAC
-CGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGC
-CGACGGACAGACCGTGGTCTTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGAT
-AACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGG
-ACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAA
-TGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTT
-TGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCAT
-TATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAA
-CCAAATGGACGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCAT
-TGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACG
-CATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCAC
-CTATGACAACAGTTATCCTGAAGATCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTAC
-CGGATCTGATTGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAA
-TGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAAC
-GATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGC
-TGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTT
-TAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCA
-AATTTCCTCCGGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGC
-TACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCA
-AACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGG
-TCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGA
-AAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGC
-AGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACAGAGCTCGCGCGATCGCGAATGTCA
-GAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAA
-GGGGTATCGTTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCC
-GGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATT
-ATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCG
-GATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAAC
-CTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGA
-TTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGAT
-GAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCT
-ATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCG
-CTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGC
-AAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCGCACGTT
-ATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAAT
-CCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACAGATACGCGCA
-TGGCGAGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGAT
-TACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCT
-CGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCG
-GGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCA
-GGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGC
-GTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTA
-GATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTC
-AGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGG
-GTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGT
-CCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCG
-GGAAACCATGCCGAGATACGTCGCTGGCGCTTGAAACAGTCGCTGGGCCGAACCTGGCTT
-AGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCG
-GAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGATAG
-CGCTAGAGCGATGAATAATCATTTTGGGAAAGGGTTAATGGCTGGGTTGCACGCGCCATA
-TGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATT
-GGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGC
-CGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGA
-GAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGTCGGTTATCGACTCGAAGGTTGACA
-GATGCGCGATCGATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCG
-GCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTCGAGATGATC
-GTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTT
-GAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACC
-TGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTT
-GAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTG
-CTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCG
-GACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTG
-GCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGC
-TTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACACGGA
-TGCGCCATCGGCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGC
-GGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGC
-TCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCA
-ATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTAC
-GATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCG
-CCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTG
-TTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTG
-GTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTA
-AAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATCGTCGGCGGCATT
-GTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACATTATTG
-TTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAG
-ACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTC
-TCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCC
-AATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATG
-GATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTG
-GGCGTCGATCCGGTGCATTTTGGCATTATCATGATCTATAACCTGGCGATTGGCACCATT
-ACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAG
-GAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATT
-ACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gbk b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gbk
deleted file mode 100644
index 126bfa9b..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gbk
+++ /dev/null
@@ -1,254 +0,0 @@
-LOCUS g4_1 7134 bp DNA linear 12-FEB-2019
-DEFINITION Genus species strain strain.
-ACCESSION
-VERSION
-KEYWORDS .
-SOURCE Genus species
- ORGANISM Genus species
- Unclassified.
-COMMENT Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka.
-FEATURES Location/Qualifiers
- source 1..7134
- /organism="Genus species"
- /mol_type="genomic DNA"
- /strain="strain"
- CDS 1..831
- /gene="amiD"
- /locus_tag="LIKMDGFN_00001"
- /EC_number="3.5.1.28"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P75820"
- /codon_start=1
- /transl_table=11
- /product="N-acetylmuramoyl-L-alanine amidase AmiD"
- /translation="MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRI
- KVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGV
- SFWRGATRLNDTSIGIELENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKP
- QNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATV
- LALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
- "
- CDS 861..1241
- /gene="hpcD"
- /locus_tag="LIKMDGFN_00002"
- /EC_number="5.3.3.10"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:Q05354"
- /codon_start=1
- /transl_table=11
- /product="5-carboxymethyl-2-hydroxymuconate
- Delta-isomerase"
- /translation="MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRA
- HWLDTWQMADGKHDYAFVHMTLKIGTGRSLESRQEVGEMLFGLIKAHFADLMENRYLA
- LSFEIAELHPTLNYKQNNVHALFK"
- CDS 1271..2074
- /gene="hpcG"
- /locus_tag="LIKMDGFN_00003"
- /EC_number="4.2.1.163"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P42270"
- /codon_start=1
- /transl_table=11
- /product="2-oxo-hept-4-ene-1,7-dioate hydratase"
- /translation="MLDKQTHTLIAQRLNQAEKQREQIRAVSLDYPNITIEDAYAVQR
- EWVNIKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGGDIPTDRFIV
- PRIEVELAFVLAKPLRGPHCTLFDVYNATDYVIPALELIDARSHNIDPETQRPRKVFD
- TISDNAANAGVILGGRPIKPDELDLRWISALLYRNGVIEETGVAAGVLNHPANGVAWL
- ANKLAPYDVQLEAGQIILGGSFTRPVPASKGDTFHVDYGNMGAISCRFV"
- CDS 2111..3514
- /locus_tag="LIKMDGFN_00004"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MPVNKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYP
- ADDGIASFKQAFADGQTVVLPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQ
- DGCQVVGEQGGSLHNVTLDVRGSDCVIKGVTMSGFGPVAQIFIGGKEPQVMRNLIIDD
- ITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERI
- DCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIR
- NVKAKNITPDFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIP
- QNFKLNAIRLDNRQVAYKLRGIQISSGNIPSFVAITNVRMTRATLELHNQPQHLFLRN
- INVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDIDRINH
- QTVNVEAVNFSLPKRGG"
- CDS 3535..4308
- /gene="hisP"
- /locus_tag="LIKMDGFN_00005"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P02915"
- /codon_start=1
- /transl_table=11
- /product="Histidine transport ATP-binding protein HisP"
- /translation="MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGK
- STFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
- LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR
- VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
- SSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK"
- CDS 4327..5094
- /gene="trmD"
- /locus_tag="LIKMDGFN_00006"
- /EC_number="2.1.1.228"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:P0A873"
- /codon_start=1
- /transl_table=11
- /product="tRNA (guanine-N(1)-)-methyltransferase"
- /translation="MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHD
- RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
- ATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVL
- GHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
- RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
- CDS 5138..5398
- /locus_tag="LIKMDGFN_00007"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLS
- AWEAGILTRRYGLDKEMVMDFFKENHSGMAVRFFMVGYRLEG"
- CDS 5413..5994
- /locus_tag="LIKMDGFN_00008"
- /inference="ab initio prediction:Prodigal:2.6"
- /codon_start=1
- /transl_table=11
- /product="hypothetical protein"
- /translation="MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYP
- ADAAELLESLVLEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
- LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA
- SCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC"
- CDS 6052..7134
- /gene="dctM"
- /locus_tag="LIKMDGFN_00009"
- /inference="ab initio prediction:Prodigal:2.6"
- /inference="similar to AA sequence:UniProtKB:O07838"
- /codon_start=1
- /transl_table=11
- /product="C4-dicarboxylate TRAP transporter large permease
- protein DctM"
- /translation="MNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAI
- AASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAA
- LFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIV
- GGIVQGIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATS
- SAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPIL
- LPIMAKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYG
- AIIGVLLLITYIPEITLFLPRLLGIM"
-ORIGIN
- 1 atgaaagcgc tactgtggct ggtgggtctc gcgttgctgt taacaggctg cgcgagcgaa
- 61 aaaggaatta tcgataaaga gggatatcag cttgataccc gacatcgggc gcaggcggcc
- 121 tatccgcgca ttaaagtcct ggtgattcac tatacggcgg aaaactttga cgtttcgctg
- 181 gcgacgttaa cgggccgcaa cgtcagttcg cattacctga ttcccgcaac cccgccatta
- 241 tatggcggta aaccgcgcat ctggcaactg gtgccggaac aggatcaggc ctggcatgcg
- 301 ggcgtcagtt tctggcgagg cgccacgcgt ctcaatgata cgtctattgg cattgagctg
- 361 gaaaatcgcg gctggcgaat gtccggcggg gtgaaatctt tcgcgccgtt tgaatccgcg
- 421 caaattcagg cattgattcc gttagcgaag gacattatcg cgcgctatga catcaaaccg
- 481 cagaatgtgg tggcccatgc ggatatcgcg ccgcagcgta aagacgatcc cggcccgcgc
- 541 ttcccgtggc gcgagctggc ggcgcagggg attggcgcct ggcctgacgc ccagcgtgtg
- 601 gcgttttatc tggctggacg cgcgccgtat acgccagtcg ataccgcaac ggtgcttgcg
- 661 ttactctcgc gctatggcta tgaagtcaaa gccgatatga cggcgcgcga gcagcagcgg
- 721 gtgattatgg cgttccagat gcacttccgt ccggcgcaat ggaacggtat cgcagatgcc
- 781 gaaacgcagg cgattgccga agcattactg gagaagtacg gccaggatta acgcgatcgc
- 841 gcgcatatcg cgcgcgatag atgccgcact ttattgctga atgtactgaa aatattcgcg
- 901 agcaggctga tttacccggc ctgttcagca aggtaaacga ggcgctggcc gccagcggga
- 961 ttttccccat cggcggtatc cgcagtcgcg cccactggct ggatacctgg cagatggctg
- 1021 acggtaagca tgattatgcg tttgtgcata tgacgctgaa aatcggtacc gggcgcagcc
- 1081 tggagagccg tcaggaagtc ggcgaaatgc tgtttgggct gattaaagcc cacttcgccg
- 1141 acctgatgga gaaccgctat ctggcgctgt cgtttgagat tgccgagcta catccgacgc
- 1201 tcaattacaa acaaaacaac gtacacgcgt tatttaaata gccgcatatg cggcgctcag
- 1261 gagcgctagc atgctcgata aacagaccca taccctgatc gcccagcgac ttaatcaggc
- 1321 tgaaaaacag cgtgaacaaa ttcgcgcagt gtcgctggat tatcccaaca tcactattga
- 1381 agatgcctat gccgtacagc gtgaatgggt caatatcaag atcgccgaag ggcgcacgct
- 1441 caaaggccac aaaatcggcc tgacctcaaa agcgatgcag gccagctcgc aaatcagcga
- 1501 accggattac ggcgcgctgc ttgacgatat gttcttccat gacggcggcg atatccccac
- 1561 cgaccgtttt atcgtcccgc gtattgaagt ggagctggcg ttcgtgctgg cgaaaccgct
- 1621 gcgcggccct cactgcacgc tgttcgacgt ctacaacgcc acggattatg tgattccggc
- 1681 gctggaactg attgacgccc gcagccacaa catcgacccg gaaacccagc gcccgcgcaa
- 1741 agtgttcgac accatttccg acaacgccgc caacgccggg gtgatcctcg gtggtcgccc
- 1801 catcaaacca gacgagctgg atctgcgctg gatctccgcg ctgctctatc gcaacggcgt
- 1861 gatcgaagaa accggcgtcg ccgcaggcgt gctgaatcat ccggccaacg gcgtggcgtg
- 1921 gctggcgaac aagcttgccc cctacgatgt ccagcttgaa gccgggcaga tcatcctcgg
- 1981 cggctcgttc acccgcccgg tgccggcgag caagggcgac accttccatg tcgattacgg
- 2041 caacatgggc gcgatcagtt gccggtttgt gtaaccagat ccgcgcgcgc atatatatcg
- 2101 cgcgcatacg atgcccgtga ataagttctc ccgacgtacc ctcctgacgg caggttccgc
- 2161 gcttgctgtt cttccttttc tgcgcgcctt gccggtacag gcgcgtgaac ctcgcgagac
- 2221 cgtcgatatt aaggattatc cggcggatga cggtatcgcc tcgttcaaac aggccttcgc
- 2281 cgacggacag accgtggtct taccgccagg atgggtgtgt gaaaatatca atgcggcgat
- 2341 aacgattccg gcgggaaaaa cgctgcgggt acagggcgcg gtgcgtggga atggccgggg
- 2401 acggtttatt ttgcaggacg ggtgtcaggt ggtgggggag cagggcggca gtctgcacaa
- 2461 tgtgacgctg gatgttcgcg ggtcggactg tgtgattaaa ggcgtgacga tgagcggctt
- 2521 tggccccgtc gcgcaaattt tcatcggcgg taaggaaccg caggtgatgc gtaatctcat
- 2581 tatcgatgac atcaccgtta cccacgccaa ctacgccatt ctccgccagg gatttcataa
- 2641 ccaaatggac ggcgcgcgga ttacgcatag ccgctttagc gatttgcagg gggacgccat
- 2701 tgagtggaat gtcgcgattc acgaccgcga catcctgatt tccgatcatg tcatcgaacg
- 2761 cattgattgt accaatggca aaatcaactg ggggatcggc atcgggctgg cgggtagcac
- 2821 ctatgacaac agttatcctg aagatcaggc agtaaaaaac tttgtggtgg ccaatattac
- 2881 cggatctgat tgccgacagc tggtgcacgt agaaaatggc aaacatttcg tcattcgcaa
- 2941 tgtcaaagcc aaaaacatca cgcccgattt cagtaaaaat gcgggtattg ataacgcaac
- 3001 gatcgccatt tatggctgtg ataatttcgt cattgataat attgatatga cgaatagtgc
- 3061 tgggatgctc atcggctatg gcgtcgttaa aggaaaatac ctgtcaattc cgcaaaactt
- 3121 taaattaaac gctattcggt tggataatcg ccaggttgct tataaattac gcggcattca
- 3181 aatttcctcc ggcaacatcc cctcttttgt cgccatcacc aatgtacgga tgacgcgtgc
- 3241 tacgctggaa ctgcataatc aaccgcagca cctctttctg cgtaatatca acgtgatgca
- 3301 aacttcagcg attggcccgg cgttaaaaat gcatttcgat ttgcgtaaag atgtccgtgg
- 3361 tcaatttatg gcccgccagg acacgctgct ttccctcgct aatgttcatg ccatcaatga
- 3421 aaacgggcag agttccgtgg atatcgacag gattaatcac caaaccgtga atgtcgaagc
- 3481 agtgaatttt tcgctgccga agcggggagg gtaacagagc tcgcgcgatc gcgaatgtca
- 3541 gaaaataaat tacacgttat cgatttgcac aaacgctacg gcggtcatga agtgctgaaa
- 3601 ggggtatcgt tgcaggcccg cgccggagat gtgattagca tcatcggctc gtccggctcc
- 3661 ggtaaaagca cttttttgcg ctgtattaac ttcctcgaaa aaccgagcga aggcgcgatt
- 3721 atcgtgaacg gtcagaacat taatctggtg cgcgacaaag acgggcagct caaagtggcg
- 3781 gataaaaatc agctacgctt gttgcgtacc cgcctgacga tggtgtttca gcactttaac
- 3841 ctctggagcc acatgacggt gctggaaaat gtgatggaag cgccgattca ggtactggga
- 3901 ttaagcaagc acgacgcgcg cgagcgggcg ttgaaatatc tggcgaaggt ggggattgat
- 3961 gagcgcgctc agggcaaata tcccgtccat ctctccggcg gccaacagca gcgcgtttct
- 4021 attgcgcgcg cgctggcgat ggaacctgac gttttactgt tcgatgaacc cacatcggcg
- 4081 ctcgatcctg aactggtcgg cgaagtgttg cgcatcatgc aacaactggc ggaagaaggc
- 4141 aaaacgatgg tggtggtcac gcatgaaatg ggcttcgccc gccatgtctc ttcgcacgtt
- 4201 atttttctgc atcaggggaa aattgaagaa gagggcgatc cggagcaggt gttcggcaat
- 4261 ccgcaaagcc cgcgtttaca gcaattcctg aaaggctcgc tgaaataaca gatacgcgca
- 4321 tggcgagtgt ttattggcat cgttagcctg tttcctgaaa tgttccgcgc aattaccgat
- 4381 tacggggtaa ctggccgggc agtaaaaaaa ggcctgctga acatccaaag ctggagtcct
- 4441 cgcgacttcg cgcatgaccg gcaccgtacc gtggacgacc gtccttacgg cggcggaccg
- 4501 gggatgttaa tgatggtgca acccttgcgg gacgccattc acgcagcaaa agccgcggca
- 4561 ggtgaaggcg ctaaagtgat ttatctgtcg cctcagggac gcaagcttga tcaagcgggc
- 4621 gttagcgagc tggccacgaa tcagaagctt attctggtgt gtggtcgcta cgaaggcgta
- 4681 gatgagcgcg taattcagac cgaaattgac gaagaatggt caattggcga ttacgttctc
- 4741 agcggtggcg aactaccggc aatgacgctg attgactccg tcgcccggtt tataccgggg
- 4801 gttctggggc atgaggcatc agcaatcgaa gattcgtttg ctgatgggtt gctggattgt
- 4861 ccgcactata cgcgccctga agtgttagag gggatggaag taccgccagt attgctgtcg
- 4921 ggaaaccatg ccgagatacg tcgctggcgc ttgaaacagt cgctgggccg aacctggctt
- 4981 agaagacctg aacttctgga aaacctggct ctgactgaag agcaagcaag gttgctggcg
- 5041 gagttcaaaa cagaacacgc acaacagcag cataaacatg atgggatggc atagcgatag
- 5101 cgctagagcg atgaataatc attttgggaa agggttaatg gctgggttgc acgcgccata
- 5161 tgcatatagc gcgcatcatg cggtgaattt ctgttctgag tataaacgtg gctttgtatt
- 5221 gggttttaca caccgtatgt tcgaaaagac cggcgatcgt caacttagcg cgtgggaggc
- 5281 cggaattctg acgcgtcgct atggtctgga taaagaaatg gtgatggatt tctttaaaga
- 5341 gaatcattcc gggatggcgg ttcgcttctt tatggtcggt tatcgactcg aaggttgaca
- 5401 gatgcgcgat cgatgtctac gcttctctat ttgcacggat tcaacagttc ccctcgctcg
- 5461 gcaaaagcgt gccagctaaa aaactggctg gcggagcgtc atccgcatgt cgagatgatc
- 5521 gtccctcaac taccgccgta tcctgccgat gcggcggagt tgctggaatc tctcgtgctt
- 5581 gagcatggcg gtgcgccatt agggctggta ggatcgtcgc tgggtggtta ttacgccacc
- 5641 tggctgtcgc aatgttttat gctgccggct gtggtggtga atcccgccgt gcggcccttt
- 5701 gaattactga ccgactatct cggtcagaac gagaacccct acaccgggca gcaatatgtg
- 5761 ctagagtctc gccatattta tgatcttaaa gtcatgcaga ttgacccgct ggaagcgccg
- 5821 gacctgatct ggctactgca acagacgggc gatgaagtgc tggattaccg ccaggcggtg
- 5881 gcatattacg cctcctgccg tcagacagtg accgagggtg gtaatcacgc attcacgggc
- 5941 ttcgaagatt atttcaacca gattgtcgat tttcttggac tgcacagttg ctgacacgga
- 6001 tgcgccatcg gcttgctggc cgtgccgttc ttcgttttgt ccggggtgat catgaatagc
- 6061 gggggaattg ccgcccggct ggtcaatttt gccaaactgt ttactggcaa actgcccggc
- 6121 tcgctctctt ataccaacat cgtcggcaat atgatgttcg gtgcaatttc cggatcggca
- 6181 attgccgcct caacctccat cggcggcgtg atggtgccga tgagcgcgcg cgaaggttac
- 6241 gatcgcggct ttgcggccgc ggtgaatatc gcctccgcgc cgacgggaat gttaattccg
- 6301 cccaccacgg cttttatcct ttatgcgctg gcaagcgggg gaacatcgat tgccgctctg
- 6361 ttcgccggcg gtctggtcgc gggagtgctg tggggcgttg gctgtatgct ggtcacgctg
- 6421 gtggtcgcta agcgtcgaaa ttatcgggtt ttcttcaccg tccaaaaagg catggcgcta
- 6481 aaagttgccg ttgaggccat tcccagcctg ctgctgatcg tgattatcgt cggcggcatt
- 6541 gtgcagggga ttttcaccgc cattgaagcc tccgcgattg ccgtggtgta tacattattg
- 6601 ttgacgatgg tgttttaccg cacgctgaaa attaaggatt tgccttcgat tttgctccag
- 6661 acagtggtaa tgaccggggt catcatgttc ctgctggcaa cctcttcggc gatgtccttc
- 6721 tcgatgtcga tcaccaatat tcctgcggcg ctgagcgata tgatcctcgg tatttccgcc
- 6781 aataaactgg ttatcctgtt agtcattacc gtctttttgt tgattatcgg cgcatttatg
- 6841 gatatcggtc cggccattct gatttttacc ccgattctgc tgccgatcat ggctaaactg
- 6901 ggcgtcgatc cggtgcattt tggcattatc atgatctata acctggcgat tggcaccatt
- 6961 acgccgccag ttggcagtgg tttatatgtc ggggcgagcg tcggtaaggt caaagttgag
- 7021 gaagtgatta aaccgttgct gcctttttac ggcgcgatta tcggcgttct gttattaatt
- 7081 acctacattc cggaaatcac actgttctta ccccgtctac tgggcatcat gtaa
-//
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gff b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gff
deleted file mode 100644
index 1ee608aa..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gff
+++ /dev/null
@@ -1,132 +0,0 @@
-##gff-version 3
-##sequence-region g4_1 1 7134
-g4_1 Prodigal:2.6 CDS 1 831 . + 0 ID=LIKMDGFN_00001;eC_number=3.5.1.28;Name=amiD;dbxref=COG:COG3023;gene=amiD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P75820;locus_tag=LIKMDGFN_00001;product=N-acetylmuramoyl-L-alanine amidase AmiD
-g4_1 Prodigal:2.6 CDS 861 1241 . + 0 ID=LIKMDGFN_00002;eC_number=5.3.3.10;Name=hpcD;gene=hpcD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:Q05354;locus_tag=LIKMDGFN_00002;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-g4_1 Prodigal:2.6 CDS 1271 2074 . + 0 ID=LIKMDGFN_00003;eC_number=4.2.1.163;Name=hpcG;gene=hpcG;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P42270;locus_tag=LIKMDGFN_00003;product=2-oxo-hept-4-ene-1%2C7-dioate hydratase
-g4_1 Prodigal:2.6 CDS 2111 3514 . + 0 ID=LIKMDGFN_00004;inference=ab initio prediction:Prodigal:2.6;locus_tag=LIKMDGFN_00004;product=hypothetical protein
-g4_1 Prodigal:2.6 CDS 3535 4308 . + 0 ID=LIKMDGFN_00005;Name=hisP;dbxref=COG:COG4598;gene=hisP;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P02915;locus_tag=LIKMDGFN_00005;product=Histidine transport ATP-binding protein HisP
-g4_1 Prodigal:2.6 CDS 4327 5094 . + 0 ID=LIKMDGFN_00006;eC_number=2.1.1.228;Name=trmD;dbxref=COG:COG0336;gene=trmD;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:P0A873;locus_tag=LIKMDGFN_00006;product=tRNA (guanine-N(1)-)-methyltransferase
-g4_1 Prodigal:2.6 CDS 5138 5398 . + 0 ID=LIKMDGFN_00007;inference=ab initio prediction:Prodigal:2.6;locus_tag=LIKMDGFN_00007;product=hypothetical protein
-g4_1 Prodigal:2.6 CDS 5413 5994 . + 0 ID=LIKMDGFN_00008;inference=ab initio prediction:Prodigal:2.6;locus_tag=LIKMDGFN_00008;product=hypothetical protein
-g4_1 Prodigal:2.6 CDS 6052 7134 . + 0 ID=LIKMDGFN_00009;Name=dctM;dbxref=COG:COG1593;gene=dctM;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:UniProtKB:O07838;locus_tag=LIKMDGFN_00009;product=C4-dicarboxylate TRAP transporter large permease protein DctM
-##FASTA
->g4_1
-ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGAGCGAA
-AAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCC
-TATCCGCGCATTAAAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTG
-GCGACGTTAACGGGCCGCAACGTCAGTTCGCATTACCTGATTCCCGCAACCCCGCCATTA
-TATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGGCCTGGCATGCG
-GGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTG
-GAAAATCGCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCG
-CAAATTCAGGCATTGATTCCGTTAGCGAAGGACATTATCGCGCGCTATGACATCAAACCG
-CAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAGACGATCCCGGCCCGCGC
-TTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTG
-GCGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCG
-TTACTCTCGCGCTATGGCTATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAGCAGCGG
-GTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGCAATGGAACGGTATCGCAGATGCC
-GAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCGATCGC
-GCGCATATCGCGCGCGATAGATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCG
-AGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGA
-TTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTG
-ACGGTAAGCATGATTATGCGTTTGTGCATATGACGCTGAAAATCGGTACCGGGCGCAGCC
-TGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCG
-ACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGC
-TCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCCGCATATGCGGCGCTCAG
-GAGCGCTAGCATGCTCGATAAACAGACCCATACCCTGATCGCCCAGCGACTTAATCAGGC
-TGAAAAACAGCGTGAACAAATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGA
-AGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATCGCCGAAGGGCGCACGCT
-CAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGA
-ACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGCGATATCCCCAC
-CGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCT
-GCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGC
-GCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAA
-AGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCC
-CATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGT
-GATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTG
-GCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGG
-CGGCTCGTTCACCCGCCCGGTGCCGGCGAGCAAGGGCGACACCTTCCATGTCGATTACGG
-CAACATGGGCGCGATCAGTTGCCGGTTTGTGTAACCAGATCCGCGCGCGCATATATATCG
-CGCGCATACGATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGC
-GCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGAC
-CGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGC
-CGACGGACAGACCGTGGTCTTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGAT
-AACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGG
-ACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAA
-TGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTT
-TGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCAT
-TATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAA
-CCAAATGGACGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCAT
-TGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACG
-CATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCAC
-CTATGACAACAGTTATCCTGAAGATCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTAC
-CGGATCTGATTGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAA
-TGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAAC
-GATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGC
-TGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTT
-TAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCA
-AATTTCCTCCGGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGC
-TACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCA
-AACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGG
-TCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGA
-AAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGC
-AGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAACAGAGCTCGCGCGATCGCGAATGTCA
-GAAAATAAATTACACGTTATCGATTTGCACAAACGCTACGGCGGTCATGAAGTGCTGAAA
-GGGGTATCGTTGCAGGCCCGCGCCGGAGATGTGATTAGCATCATCGGCTCGTCCGGCTCC
-GGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATT
-ATCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCG
-GATAAAAATCAGCTACGCTTGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAAC
-CTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGGAAGCGCCGATTCAGGTACTGGGA
-TTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGATTGAT
-GAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCT
-ATTGCGCGCGCGCTGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCG
-CTCGATCCTGAACTGGTCGGCGAAGTGTTGCGCATCATGCAACAACTGGCGGAAGAAGGC
-AAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCTCTTCGCACGTT
-ATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAAT
-CCGCAAAGCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACAGATACGCGCA
-TGGCGAGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATGTTCCGCGCAATTACCGAT
-TACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACATCCAAAGCTGGAGTCCT
-CGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCG
-GGGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCA
-GGTGAAGGCGCTAAAGTGATTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGC
-GTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGGTGTGTGGTCGCTACGAAGGCGTA
-GATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACGTTCTC
-AGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGG
-GTTCTGGGGCATGAGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGT
-CCGCACTATACGCGCCCTGAAGTGTTAGAGGGGATGGAAGTACCGCCAGTATTGCTGTCG
-GGAAACCATGCCGAGATACGTCGCTGGCGCTTGAAACAGTCGCTGGGCCGAACCTGGCTT
-AGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCG
-GAGTTCAAAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGATAG
-CGCTAGAGCGATGAATAATCATTTTGGGAAAGGGTTAATGGCTGGGTTGCACGCGCCATA
-TGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTATAAACGTGGCTTTGTATT
-GGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGC
-CGGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGA
-GAATCATTCCGGGATGGCGGTTCGCTTCTTTATGGTCGGTTATCGACTCGAAGGTTGACA
-GATGCGCGATCGATGTCTACGCTTCTCTATTTGCACGGATTCAACAGTTCCCCTCGCTCG
-GCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTCGAGATGATC
-GTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTT
-GAGCATGGCGGTGCGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACC
-TGGCTGTCGCAATGTTTTATGCTGCCGGCTGTGGTGGTGAATCCCGCCGTGCGGCCCTTT
-GAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGCAGCAATATGTG
-CTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCG
-GACCTGATCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTG
-GCATATTACGCCTCCTGCCGTCAGACAGTGACCGAGGGTGGTAATCACGCATTCACGGGC
-TTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGCACAGTTGCTGACACGGA
-TGCGCCATCGGCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGC
-GGGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGC
-TCGCTCTCTTATACCAACATCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCA
-ATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCGCGCGCGAAGGTTAC
-GATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCG
-CCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTG
-TTCGCCGGCGGTCTGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTG
-GTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAAAAGGCATGGCGCTA
-AAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATCGTCGGCGGCATT
-GTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACATTATTG
-TTGACGATGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAG
-ACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTC
-TCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCC
-AATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATG
-GATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTG
-GGCGTCGATCCGGTGCATTTTGGCATTATCATGATCTATAACCTGGCGATTGGCACCATT
-ACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAG
-GAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATT
-ACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.log b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.log
deleted file mode 100644
index 2d216876..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.log
+++ /dev/null
@@ -1,119 +0,0 @@
-[13:18:51] This is prokka 1.14-dev
-[13:18:51] Written by Torsten Seemann <torsten.seemann@gmail.com>
-[13:18:51] Homepage is https://github.com/tseemann/prokka
-[13:18:51] Local time is Tue Feb 12 13:18:51 2019
-[13:18:51] You are aperrin
-[13:18:51] Operating system is darwin
-[13:18:51] You have BioPerl 1.006924
-[13:18:51] System has 8 cores.
-[13:18:51] Will use maximum of 1 cores.
-[13:18:51] Annotating as >>> Bacteria <<<
-[13:18:51] Generating locus_tag from 'Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna' contents.
-[13:18:51] Setting --locustag LIKMDGFN from MD5 5246d0f7b5f59e1da550241263d19049
-[13:18:51] Creating new output folder: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes
-[13:18:51] Running: mkdir -p Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes
-[13:18:51] Using filename prefix: GEN4.1111.00001.XXX
-[13:18:51] Setting HMMER_NCPU=1
-[13:18:51] Writing log to: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.log
-[13:18:51] Command: /usr/local/bin/prokka --outdir Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes --cpus 1 --prefix GEN4.1111.00001 Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
-[13:18:51] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin
-[13:18:51] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common
-[13:18:51] Appending to PATH: /Users/aperrin/Softwares/src/prokka/bin
-[13:18:51] Looking for 'aragorn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/aragorn
-[13:18:51] Determined aragorn version is 1.2
-[13:18:51] Looking for 'barrnap' - found /usr/local/bin/barrnap
-[13:18:51] Determined barrnap version is 0.8
-[13:18:51] Looking for 'blastp' - found /Users/aperrin/Softwares/bin/blastp
-[13:18:51] Determined blastp version is 2.3
-[13:18:51] Looking for 'cmpress' - found /usr/local/bin/cmpress
-[13:18:51] Determined cmpress version is 1.1
-[13:18:51] Looking for 'cmscan' - found /usr/local/bin/cmscan
-[13:18:51] Determined cmscan version is 1.1
-[13:18:51] Looking for 'egrep' - found /usr/bin/egrep
-[13:18:51] Looking for 'find' - found /usr/bin/find
-[13:18:51] Looking for 'grep' - found /usr/bin/grep
-[13:18:51] Looking for 'hmmpress' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/hmmpress
-[13:18:51] Determined hmmpress version is 3.1
-[13:18:51] Looking for 'hmmscan' - found /usr/local/bin/hmmscan
-[13:18:51] Determined hmmscan version is 3.1
-[13:18:51] Looking for 'java' - found /usr/bin/java
-[13:18:51] Looking for 'less' - found /usr/bin/less
-[13:18:51] Looking for 'makeblastdb' - found /Users/aperrin/Softwares/bin/makeblastdb
-[13:18:51] Determined makeblastdb version is 2.3
-[13:18:51] Looking for 'minced' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/../common/minced
-[13:18:51] Determined minced version is 2.0
-[13:18:51] Looking for 'parallel' - found /usr/local/bin/parallel
-[13:18:52] Determined parallel version is 20181022
-[13:18:52] Looking for 'prodigal' - found /usr/local/bin/prodigal
-[13:18:52] Determined prodigal version is 2.6
-[13:18:52] Looking for 'prokka-genbank_to_fasta_db' - found /Users/aperrin/Softwares/src/prokka/bin/prokka-genbank_to_fasta_db
-[13:18:52] Looking for 'sed' - found /usr/bin/sed
-[13:18:52] Looking for 'tbl2asn' - found /Users/aperrin/Softwares/src/prokka/bin/../binaries/darwin/tbl2asn
-[13:18:52] Determined tbl2asn version is 25.6
-[13:18:52] Using genetic code table 11.
-[13:18:52] Loading and checking input file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna
-[13:18:52] Wrote 1 contigs totalling 7134 bp.
-[13:18:52] Predicting tRNAs and tmRNAs
-[13:18:52] Running: aragorn -l -gc11 -w Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.fna
-[13:18:52] Found 0 tRNAs
-[13:18:52] Predicting Ribosomal RNAs
-[13:18:52] Running Barrnap with 1 threads
-[13:18:52] Found 0 rRNAs
-[13:18:52] Skipping ncRNA search, enable with --rfam if desired.
-[13:18:52] Total of 0 tRNA + rRNA features
-[13:18:52] Searching for CRISPR repeats
-[13:18:52] Found 0 CRISPRs
-[13:18:52] Predicting coding sequences
-[13:18:52] Contigs total 7134 bp, so using meta mode
-[13:18:52] Running: prodigal -i Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.fna -c -m -g 11 -p meta -f sco -q
-[13:18:52] Found 9 CDS
-[13:18:52] Connecting features back to sequences
-[13:18:52] Not using genus-specific database. Try --usegenus to enable it.
-[13:18:52] Annotating CDS, please be patient.
-[13:18:52] Will use 1 CPUs for similarity searching.
-[13:18:52] There are still 9 unannotated CDS left (started with 9)
-[13:18:52] Will use blast to search against /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot with 1 CPUs
-[13:18:52] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/sprot\.faa | parallel --gnu --plain -j 1 --block 1161 --recstart '>' --pipe blastp -query - -db /Users/aperrin/Softwares/src/prokka/db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/sprot\.blast 2> /dev/null
-[13:18:53] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/sprot.faa
-[13:18:53] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/sprot.blast
-[13:18:53] There are still 3 unannotated CDS left (started with 9)
-[13:18:53] Will use hmmer3 to search against /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm with 1 CPUs
-[13:18:53] Running: cat Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.faa | parallel --gnu --plain -j 1 --block 379 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /Users/aperrin/Softwares/src/prokka/db/hmm/HAMAP.hmm /dev/stdin > Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/HAMAP\.hmm\.hmmer3 2> /dev/null
-[13:18:53] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/HAMAP.hmm.faa
-[13:18:53] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/HAMAP.hmm.hmmer3
-[13:18:53] Labelling remaining 3 proteins as 'hypothetical protein'
-[13:18:53] Found 6 unique /gene codes.
-[13:18:53] Fixed 0 colliding /gene names.
-[13:18:53] Adding /locus_tag identifiers
-[13:18:53] Assigned 9 locus_tags to CDS and RNA features.
-[13:18:53] Writing outputs to Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/
-[13:18:53] Generating annotation statistics file
-[13:18:53] Generating Genbank and Sequin files
-[13:18:53] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14-dev from https://github.com/tseemann/prokka' -Z Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.err -i Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.fsa 2> /dev/null
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/errorsummary.val
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.dr
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fixedproducts
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.ecn
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.val
-[13:18:54] Repairing broken .GBK output that tbl2asn produces...
-[13:18:54] Running: sed 's/COORDINATES: profile/COORDINATES:profile/' < Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.gbf > Examples\/1\-res\-Annotate\/tmp_files\/genome4\.fst\-split5N\.fna\-prokkaRes\/GEN4\.1111\.00001\.gbk
-[13:18:54] Deleting unwanted file: Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gbf
-[13:18:54] Output files:
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fsa
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.faa
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.log
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.ffn
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gbk
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.gff
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tbl
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.sqn
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tsv
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.fna
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.err
-[13:18:54] Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.txt
-[13:18:54] Annotation finished successfully.
-[13:18:54] Walltime used: 0.05 minutes
-[13:18:54] If you use this result please cite the Prokka paper:
-[13:18:54] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
-[13:18:54] Type 'prokka --citation' for more details.
-[13:18:54] Share and enjoy!
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.sqn b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.sqn
deleted file mode 100644
index cde29bf5..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.sqn
+++ /dev/null
@@ -1,798 +0,0 @@
-Seq-entry ::= set {
- class genbank ,
- seq-set {
- set {
- class nuc-prot ,
- descr {
- source {
- org {
- taxname "Genus species" ,
- orgname {
- mod {
- {
- subtype strain ,
- subname "strain" } } ,
- gcode 11 } } } ,
- comment "Annotated using prokka 1.14-dev from
- https://github.com/tseemann/prokka" ,
- user {
- type
- str "NcbiCleanup" ,
- data {
- {
- label
- str "method" ,
- data
- str "SeriousSeqEntryCleanup" } ,
- {
- label
- str "version" ,
- data
- int 8 } ,
- {
- label
- str "month" ,
- data
- int 2 } ,
- {
- label
- str "day" ,
- data
- int 12 } ,
- {
- label
- str "year" ,
- data
- int 2019 } } } ,
- create-date
- std {
- year 2019 ,
- month 2 ,
- day 12 } } ,
- seq-set {
- seq {
- id {
- local
- str "g4_1" } ,
- descr {
- molinfo {
- biomol genomic } } ,
- inst {
- repr raw ,
- mol dna ,
- length 7134 ,
- seq-data
- iupacna "ATGAAAGCGCTACTGTGGCTGGTGGGTCTCGCGTTGCTGTTAACAGGCTGCGCGA
-GCGAAAAAGGAATTATCGATAAAGAGGGATATCAGCTTGATACCCGACATCGGGCGCAGGCGGCCTATCCGCGCATTA
-AAGTCCTGGTGATTCACTATACGGCGGAAAACTTTGACGTTTCGCTGGCGACGTTAACGGGCCGCAACGTCAGTTCGC
-ATTACCTGATTCCCGCAACCCCGCCATTATATGGCGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGATCAGG
-CCTGGCATGCGGGCGTCAGTTTCTGGCGAGGCGCCACGCGTCTCAATGATACGTCTATTGGCATTGAGCTGGAAAATC
-GCGGCTGGCGAATGTCCGGCGGGGTGAAATCTTTCGCGCCGTTTGAATCCGCGCAAATTCAGGCATTGATTCCGTTAG
-CGAAGGACATTATCGCGCGCTATGACATCAAACCGCAGAATGTGGTGGCCCATGCGGATATCGCGCCGCAGCGTAAAG
-ACGATCCCGGCCCGCGCTTCCCGTGGCGCGAGCTGGCGGCGCAGGGGATTGGCGCCTGGCCTGACGCCCAGCGTGTGG
-CGTTTTATCTGGCTGGACGCGCGCCGTATACGCCAGTCGATACCGCAACGGTGCTTGCGTTACTCTCGCGCTATGGCT
-ATGAAGTCAAAGCCGATATGACGGCGCGCGAGCAGCAGCGGGTGATTATGGCGTTCCAGATGCACTTCCGTCCGGCGC
-AATGGAACGGTATCGCAGATGCCGAAACGCAGGCGATTGCCGAAGCATTACTGGAGAAGTACGGCCAGGATTAACGCG
-ATCGCGCGCATATCGCGCGCGATAGATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTT
-ACCCGGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGC
-CCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTATGCGTTTGTGCATATGACGCTGAAAATCGGTAC
-CGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGAT
-GGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGCTACATCCGACGCTCAATTACAAACAAAACAACGTACA
-CGCGTTATTTAAATAGCCGCATATGCGGCGCTCAGGAGCGCTAGCATGCTCGATAAACAGACCCATACCCTGATCGCC
-CAGCGACTTAATCAGGCTGAAAAACAGCGTGAACAAATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAA
-GATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATCGCCGAAGGGCGCACGCTCAAAGGCCACAAAATCGGC
-CTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTC
-CATGACGGCGGCGATATCCCCACCGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAA
-CCGCTGCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGGAACTGATT
-GACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGTTCGACACCATTTCCGACAACGCCGCC
-AACGCCGGGGTGATCCTCGGTGGTCGCCCCATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTAT
-CGCAACGGCGTGATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGGCG
-AACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCTCGTTCACCCGCCCGGTGCCG
-GCGAGCAAGGGCGACACCTTCCATGTCGATTACGGCAACATGGGCGCGATCAGTTGCCGGTTTGTGTAACCAGATCCG
-CGCGCGCATATATATCGCGCGCATACGATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCG
-CTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTAT
-CCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCTTACCGCCAGGATGGGTG
-TGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGC
-CGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGAT
-GTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGT
-AAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAG
-GGATTTCATAACCAAATGGACGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGG
-AATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATC
-AACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGATCAGGCAGTAAAAAACTTT
-GTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAAT
-GTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATTTATGGCTGT
-GATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCTGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAA
-TACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGC
-ATTCAAATTTCCTCCGGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTG
-CATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATG
-CATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCAT
-GCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAAT
-TTTTCGCTGCCGAAGCGGGGAGGGTAACAGAGCTCGCGCGATCGCGAATGTCAGAAAATAAATTACACGTTATCGATT
-TGCACAAACGCTACGGCGGTCATGAAGTGCTGAAAGGGGTATCGTTGCAGGCCCGCGCCGGAGATGTGATTAGCATCA
-TCGGCTCGTCCGGCTCCGGTAAAAGCACTTTTTTGCGCTGTATTAACTTCCTCGAAAAACCGAGCGAAGGCGCGATTA
-TCGTGAACGGTCAGAACATTAATCTGGTGCGCGACAAAGACGGGCAGCTCAAAGTGGCGGATAAAAATCAGCTACGCT
-TGTTGCGTACCCGCCTGACGATGGTGTTTCAGCACTTTAACCTCTGGAGCCACATGACGGTGCTGGAAAATGTGATGG
-AAGCGCCGATTCAGGTACTGGGATTAAGCAAGCACGACGCGCGCGAGCGGGCGTTGAAATATCTGGCGAAGGTGGGGA
-TTGATGAGCGCGCTCAGGGCAAATATCCCGTCCATCTCTCCGGCGGCCAACAGCAGCGCGTTTCTATTGCGCGCGCGC
-TGGCGATGGAACCTGACGTTTTACTGTTCGATGAACCCACATCGGCGCTCGATCCTGAACTGGTCGGCGAAGTGTTGC
-GCATCATGCAACAACTGGCGGAAGAAGGCAAAACGATGGTGGTGGTCACGCATGAAATGGGCTTCGCCCGCCATGTCT
-CTTCGCACGTTATTTTTCTGCATCAGGGGAAAATTGAAGAAGAGGGCGATCCGGAGCAGGTGTTCGGCAATCCGCAAA
-GCCCGCGTTTACAGCAATTCCTGAAAGGCTCGCTGAAATAACAGATACGCGCATGGCGAGTGTTTATTGGCATCGTTA
-GCCTGTTTCCTGAAATGTTCCGCGCAATTACCGATTACGGGGTAACTGGCCGGGCAGTAAAAAAAGGCCTGCTGAACA
-TCCAAAGCTGGAGTCCTCGCGACTTCGCGCATGACCGGCACCGTACCGTGGACGACCGTCCTTACGGCGGCGGACCGG
-GGATGTTAATGATGGTGCAACCCTTGCGGGACGCCATTCACGCAGCAAAAGCCGCGGCAGGTGAAGGCGCTAAAGTGA
-TTTATCTGTCGCCTCAGGGACGCAAGCTTGATCAAGCGGGCGTTAGCGAGCTGGCCACGAATCAGAAGCTTATTCTGG
-TGTGTGGTCGCTACGAAGGCGTAGATGAGCGCGTAATTCAGACCGAAATTGACGAAGAATGGTCAATTGGCGATTACG
-TTCTCAGCGGTGGCGAACTACCGGCAATGACGCTGATTGACTCCGTCGCCCGGTTTATACCGGGGGTTCTGGGGCATG
-AGGCATCAGCAATCGAAGATTCGTTTGCTGATGGGTTGCTGGATTGTCCGCACTATACGCGCCCTGAAGTGTTAGAGG
-GGATGGAAGTACCGCCAGTATTGCTGTCGGGAAACCATGCCGAGATACGTCGCTGGCGCTTGAAACAGTCGCTGGGCC
-GAACCTGGCTTAGAAGACCTGAACTTCTGGAAAACCTGGCTCTGACTGAAGAGCAAGCAAGGTTGCTGGCGGAGTTCA
-AAACAGAACACGCACAACAGCAGCATAAACATGATGGGATGGCATAGCGATAGCGCTAGAGCGATGAATAATCATTTT
-GGGAAAGGGTTAATGGCTGGGTTGCACGCGCCATATGCATATAGCGCGCATCATGCGGTGAATTTCTGTTCTGAGTAT
-AAACGTGGCTTTGTATTGGGTTTTACACACCGTATGTTCGAAAAGACCGGCGATCGTCAACTTAGCGCGTGGGAGGCC
-GGAATTCTGACGCGTCGCTATGGTCTGGATAAAGAAATGGTGATGGATTTCTTTAAAGAGAATCATTCCGGGATGGCG
-GTTCGCTTCTTTATGGTCGGTTATCGACTCGAAGGTTGACAGATGCGCGATCGATGTCTACGCTTCTCTATTTGCACG
-GATTCAACAGTTCCCCTCGCTCGGCAAAAGCGTGCCAGCTAAAAAACTGGCTGGCGGAGCGTCATCCGCATGTCGAGA
-TGATCGTCCCTCAACTACCGCCGTATCCTGCCGATGCGGCGGAGTTGCTGGAATCTCTCGTGCTTGAGCATGGCGGTG
-CGCCATTAGGGCTGGTAGGATCGTCGCTGGGTGGTTATTACGCCACCTGGCTGTCGCAATGTTTTATGCTGCCGGCTG
-TGGTGGTGAATCCCGCCGTGCGGCCCTTTGAATTACTGACCGACTATCTCGGTCAGAACGAGAACCCCTACACCGGGC
-AGCAATATGTGCTAGAGTCTCGCCATATTTATGATCTTAAAGTCATGCAGATTGACCCGCTGGAAGCGCCGGACCTGA
-TCTGGCTACTGCAACAGACGGGCGATGAAGTGCTGGATTACCGCCAGGCGGTGGCATATTACGCCTCCTGCCGTCAGA
-CAGTGACCGAGGGTGGTAATCACGCATTCACGGGCTTCGAAGATTATTTCAACCAGATTGTCGATTTTCTTGGACTGC
-ACAGTTGCTGACACGGATGCGCCATCGGCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCG
-GGGGAATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTATACCAACA
-TCGTCGGCAATATGATGTTCGGTGCAATTTCCGGATCGGCAATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGC
-CGATGAGCGCGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAA
-TTCCGCCCACCACGGCTTTTATCCTTTATGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTC
-TGGTCGCGGGAGTGCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTT
-TCTTCACCGTCCAAAAAGGCATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATCG
-TCGGCGGCATTGTGCAGGGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACATTATTGTTGACGA
-TGGTGTTTTACCGCACGCTGAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCA
-TGTTCCTGCTGGCAACCTCTTCGGCGATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGA
-TCCTCGGTATTTCCGCCAATAAACTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGG
-ATATCGGTCCGGCCATTCTGATTTTTACCCCGATTCTGCTGCCGATCATGGCTAAACTGGGCGTCGATCCGGTGCATT
-TTGGCATTATCATGATCTATAACCTGGCGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGA
-GCGTCGGTAAGGTCAAAGTTGAGGAAGTGATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTAT
-TAATTACCTACATTCCGGAAATCACACTGTTCTTACCCCGTCTACTGGGCATCATGTAA" } } ,
- seq {
- id {
- local
- str "g4_1_1" } ,
- descr {
- title "N-acetylmuramoyl-L-alanine amidase AmiD [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 276 ,
- seq-data
- ncbieaa "MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRIKVLVIHYTAEN
-FDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGGVKS
-FAPFESAQIQALIPLAKDIIARYDIKPQNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYT
-PVDTATVLALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 10 ,
- data
- prot {
- name {
- "N-acetylmuramoyl-L-alanine amidase AmiD" } ,
- ec {
- "3.5.1.28" } } ,
- location
- int {
- from 0 ,
- to 275 ,
- id
- local
- str "g4_1_1" } } } } } } ,
- seq {
- id {
- local
- str "g4_1_2" } ,
- descr {
- title "5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Genus
- species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 126 ,
- seq-data
- ncbieaa "MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADG
-KHDYAFVHMTLKIGTGRSLESRQEVGEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNNVHALFK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 11 ,
- data
- prot {
- name {
- "5-carboxymethyl-2-hydroxymuconate Delta-isomerase" } ,
- ec {
- "5.3.3.10" } } ,
- location
- int {
- from 0 ,
- to 125 ,
- id
- local
- str "g4_1_2" } } } } } } ,
- seq {
- id {
- local
- str "g4_1_3" } ,
- descr {
- title "2-oxo-hept-4-ene-1,7-dioate hydratase [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 267 ,
- seq-data
- ncbieaa "MLDKQTHTLIAQRLNQAEKQREQIRAVSLDYPNITIEDAYAVQREWVNIKIAEGR
-TLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGGDIPTDRFIVPRIEVELAFVLAKPLRGPHCTLFDVYNATDY
-VIPALELIDARSHNIDPETQRPRKVFDTISDNAANAGVILGGRPIKPDELDLRWISALLYRNGVIEETGVAAGVLNHP
-ANGVAWLANKLAPYDVQLEAGQIILGGSFTRPVPASKGDTFHVDYGNMGAISCRFV" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 12 ,
- data
- prot {
- name {
- "2-oxo-hept-4-ene-1,7-dioate hydratase" } ,
- ec {
- "4.2.1.163" } } ,
- location
- int {
- from 0 ,
- to 266 ,
- id
- local
- str "g4_1_3" } } } } } } ,
- seq {
- id {
- local
- str "g4_1_4" } ,
- descr {
- title "hypothetical protein LIKMDGFN_00004 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 467 ,
- seq-data
- ncbieaa "MPVNKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQA
-FADGQTVVLPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTLDVRGSDCVIKGVT
-MSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILIS
-DHVIERIDCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSK
-NAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISSGNIPSFV
-AITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDI
-DRINHQTVNVEAVNFSLPKRGG" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 13 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 466 ,
- id
- local
- str "g4_1_4" } } } } } } ,
- seq {
- id {
- local
- str "g4_1_5" } ,
- descr {
- title "Histidine transport ATP-binding protein HisP [Genus
- species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 257 ,
- seq-data
- ncbieaa "MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE
-KPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL
-KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE
-MGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 14 ,
- data
- prot {
- name {
- "Histidine transport ATP-binding protein HisP" } } ,
- location
- int {
- from 0 ,
- to 256 ,
- id
- local
- str "g4_1_5" } } } } } } ,
- seq {
- id {
- local
- str "g4_1_6" } ,
- descr {
- title "tRNA (guanine-N(1)-)-methyltransferase [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 255 ,
- seq-data
- ncbieaa "MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYG
-GGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDERVIQTEIDEEWSI
-GDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQ
-SLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 15 ,
- data
- prot {
- name {
- "tRNA (guanine-N(1)-)-methyltransferase" } ,
- ec {
- "2.1.1.228" } } ,
- location
- int {
- from 0 ,
- to 254 ,
- id
- local
- str "g4_1_6" } } } } } } ,
- seq {
- id {
- local
- str "g4_1_7" } ,
- descr {
- title "hypothetical protein LIKMDGFN_00007 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 86 ,
- seq-data
- ncbieaa "MAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMFEKTGDRQLSAWEAGILTRRY
-GLDKEMVMDFFKENHSGMAVRFFMVGYRLEG" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 16 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 85 ,
- id
- local
- str "g4_1_7" } } } } } } ,
- seq {
- id {
- local
- str "g4_1_8" } ,
- descr {
- title "hypothetical protein LIKMDGFN_00008 [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 193 ,
- seq-data
- ncbieaa "MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYPADAAELLESLV
-LEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGQNENPYTGQQYVLESRHIYDLKVMQIDPL
-EAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 17 ,
- data
- prot {
- name {
- "hypothetical protein" } } ,
- location
- int {
- from 0 ,
- to 192 ,
- id
- local
- str "g4_1_8" } } } } } } ,
- seq {
- id {
- local
- str "g4_1_9" } ,
- descr {
- title "C4-dicarboxylate TRAP transporter large permease protein
- DctM [Genus species]" ,
- molinfo {
- biomol peptide ,
- tech concept-trans } } ,
- inst {
- repr raw ,
- mol aa ,
- length 360 ,
- seq-data
- ncbieaa "MNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMV
-PMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRV
-FFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVI
-MFLLATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVH
-FGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM" } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 18 ,
- data
- prot {
- name {
- "C4-dicarboxylate TRAP transporter large permease
- protein DctM" } } ,
- location
- int {
- from 0 ,
- to 359 ,
- id
- local
- str "g4_1_9" } } } } } } } ,
- annot {
- {
- data
- ftable {
- {
- id
- local
- id 1 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_1" ,
- location
- int {
- from 0 ,
- to 830 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P75820" } } ,
- xref {
- {
- data
- gene {
- locus "amiD" ,
- locus-tag "LIKMDGFN_00001" } } } } ,
- {
- id
- local
- id 2 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_2" ,
- location
- int {
- from 860 ,
- to 1240 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:Q05354" } } ,
- xref {
- {
- data
- gene {
- locus "hpcD" ,
- locus-tag "LIKMDGFN_00002" } } } } ,
- {
- id
- local
- id 3 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_3" ,
- location
- int {
- from 1270 ,
- to 2073 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P42270" } } ,
- xref {
- {
- data
- gene {
- locus "hpcG" ,
- locus-tag "LIKMDGFN_00003" } } } } ,
- {
- id
- local
- id 4 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_4" ,
- location
- int {
- from 2110 ,
- to 3513 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "LIKMDGFN_00004" } } } } ,
- {
- id
- local
- id 5 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_5" ,
- location
- int {
- from 3534 ,
- to 4307 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P02915" } } ,
- xref {
- {
- data
- gene {
- locus "hisP" ,
- locus-tag "LIKMDGFN_00005" } } } } ,
- {
- id
- local
- id 6 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_6" ,
- location
- int {
- from 4326 ,
- to 5093 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:P0A873" } } ,
- xref {
- {
- data
- gene {
- locus "trmD" ,
- locus-tag "LIKMDGFN_00006" } } } } ,
- {
- id
- local
- id 7 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_7" ,
- location
- int {
- from 5137 ,
- to 5397 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "LIKMDGFN_00007" } } } } ,
- {
- id
- local
- id 8 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_8" ,
- location
- int {
- from 5412 ,
- to 5993 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } } ,
- xref {
- {
- data
- gene {
- locus-tag "LIKMDGFN_00008" } } } } ,
- {
- id
- local
- id 9 ,
- data
- cdregion {
- frame one ,
- code {
- id 11 } } ,
- product
- whole
- local
- str "g4_1_9" ,
- location
- int {
- from 6051 ,
- to 7133 ,
- strand plus ,
- id
- local
- str "g4_1" } ,
- qual {
- {
- qual "inference" ,
- val "ab initio prediction:Prodigal:2.6" } ,
- {
- qual "inference" ,
- val "similar to AA sequence:UniProtKB:O07838" } } ,
- xref {
- {
- data
- gene {
- locus "dctM" ,
- locus-tag "LIKMDGFN_00009" } } } } } } } } } }
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tbl b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tbl
deleted file mode 100644
index 13f7f5d4..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tbl
+++ /dev/null
@@ -1,57 +0,0 @@
->Feature g4_1
-1 831 CDS
- EC_number 3.5.1.28
- dbxref COG:COG3023
- gene amiD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P75820
- locus_tag LIKMDGFN_00001
- product N-acetylmuramoyl-L-alanine amidase AmiD
-861 1241 CDS
- EC_number 5.3.3.10
- gene hpcD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:Q05354
- locus_tag LIKMDGFN_00002
- product 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-1271 2074 CDS
- EC_number 4.2.1.163
- gene hpcG
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P42270
- locus_tag LIKMDGFN_00003
- product 2-oxo-hept-4-ene-1,7-dioate hydratase
-2111 3514 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag LIKMDGFN_00004
- product hypothetical protein
-3535 4308 CDS
- dbxref COG:COG4598
- gene hisP
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P02915
- locus_tag LIKMDGFN_00005
- product Histidine transport ATP-binding protein HisP
-4327 5094 CDS
- EC_number 2.1.1.228
- dbxref COG:COG0336
- gene trmD
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:P0A873
- locus_tag LIKMDGFN_00006
- product tRNA (guanine-N(1)-)-methyltransferase
-5138 5398 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag LIKMDGFN_00007
- product hypothetical protein
-5413 5994 CDS
- inference ab initio prediction:Prodigal:2.6
- locus_tag LIKMDGFN_00008
- product hypothetical protein
-6052 7134 CDS
- dbxref COG:COG1593
- gene dctM
- inference ab initio prediction:Prodigal:2.6
- inference similar to AA sequence:UniProtKB:O07838
- locus_tag LIKMDGFN_00009
- product C4-dicarboxylate TRAP transporter large permease protein DctM
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tsv b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tsv
deleted file mode 100644
index 6fb4e7be..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.tsv
+++ /dev/null
@@ -1,10 +0,0 @@
-locus_tag ftype length_bp gene EC_number COG product
-LIKMDGFN_00001 CDS 831 amiD 3.5.1.28 COG3023 N-acetylmuramoyl-L-alanine amidase AmiD
-LIKMDGFN_00002 CDS 381 hpcD 5.3.3.10 5-carboxymethyl-2-hydroxymuconate Delta-isomerase
-LIKMDGFN_00003 CDS 804 hpcG 4.2.1.163 2-oxo-hept-4-ene-1,7-dioate hydratase
-LIKMDGFN_00004 CDS 1404 hypothetical protein
-LIKMDGFN_00005 CDS 774 hisP COG4598 Histidine transport ATP-binding protein HisP
-LIKMDGFN_00006 CDS 768 trmD 2.1.1.228 COG0336 tRNA (guanine-N(1)-)-methyltransferase
-LIKMDGFN_00007 CDS 261 hypothetical protein
-LIKMDGFN_00008 CDS 582 hypothetical protein
-LIKMDGFN_00009 CDS 1083 dctM COG1593 C4-dicarboxylate TRAP transporter large permease protein DctM
diff --git a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.txt b/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.txt
deleted file mode 100644
index 61a7be1f..00000000
--- a/Examples/1-res-Annotate/tmp_files/genome4.fst-split5N.fna-prokkaRes/GEN4.1111.00001.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-organism: Genus species strain
-contigs: 1
-bases: 7134
-CDS: 9
--
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