diff --git a/for_build/annote_and_1tree/Dockerfile b/for_build/annote_and_1tree/Dockerfile index 302287293c5327e0c7c9f96c06777c5e3eab4d36..606d9bb32a4f47d1e27496514d3c960731bc91ce 100644 --- a/for_build/annote_and_1tree/Dockerfile +++ b/for_build/annote_and_1tree/Dockerfile @@ -25,9 +25,11 @@ RUN git clone https://github.com/tseemann/prokka.git RUN /tmp/prokka/bin/prokka --setupdb RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin +RUN rm /usr/bin/mafft # remove mafft installed with bioperl + # Install quicktree WORKDIR /tmp RUN git clone https://github.com/tseemann/quicktree WORKDIR quicktree RUN make &&\ - ln -s /tmp/quicktree/quicktree /usr/local/bin \ No newline at end of file + ln -s /tmp/quicktree/quicktree /usr/local/bin diff --git a/for_build/barrnap_only/Dockerfile b/for_build/barrnap_only/Dockerfile index 125659e61a33b92006877b3c2d1187ad43fb1c0c..becaf686b253443c70c0ae06ec1ade08d2735cc4 100644 --- a/for_build/barrnap_only/Dockerfile +++ b/for_build/barrnap_only/Dockerfile @@ -24,3 +24,5 @@ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\ tar -xf 0.8.tar.gz &&\ rm 0.8.tar.gz RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin + +RUN rm /usr/bin/mafft # remove mafft installed with bioperl \ No newline at end of file diff --git a/for_build/basics/Dockerfile b/for_build/basics/Dockerfile index dd9fda167e23a93f816a8749e0909e23cf155ccb..bed4a7fb9e6a963cbcf02ed70137952a365c0b34 100644 --- a/for_build/basics/Dockerfile +++ b/for_build/basics/Dockerfile @@ -17,3 +17,5 @@ RUN apt-get install -y \ # Update pip RUN pip3 install --upgrade pip + +RUN rm /usr/bin/mafft # remove mafft installed with bioperl \ No newline at end of file diff --git a/for_build/prokka_only/Dockerfile b/for_build/prokka_only/Dockerfile index 54a54a40616f16c2783458f8f83bf4194d37deab..47c01cd439dbda1b3a1791ad1f5203dee3b02168 100644 --- a/for_build/prokka_only/Dockerfile +++ b/for_build/prokka_only/Dockerfile @@ -24,3 +24,5 @@ RUN apt-get install -y\ RUN git clone https://github.com/tseemann/prokka.git RUN /tmp/prokka/bin/prokka --setupdb RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin + +RUN rm /usr/bin/mafft # remove mafft installed with bioperl