From 8986fa0aeab6aa2a076f140bf925363e24fb311c Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Wed, 10 Jan 2018 17:35:32 +0100
Subject: [PATCH] remove mafft install from bioperl
---
for_build/annote_and_1tree/Dockerfile | 4 +++-
for_build/barrnap_only/Dockerfile | 2 ++
for_build/basics/Dockerfile | 2 ++
for_build/prokka_only/Dockerfile | 2 ++
4 files changed, 9 insertions(+), 1 deletion(-)
diff --git a/for_build/annote_and_1tree/Dockerfile b/for_build/annote_and_1tree/Dockerfile
index 30228729..606d9bb3 100644
--- a/for_build/annote_and_1tree/Dockerfile
+++ b/for_build/annote_and_1tree/Dockerfile
@@ -25,9 +25,11 @@ RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
+RUN rm /usr/bin/mafft # remove mafft installed with bioperl
+
# Install quicktree
WORKDIR /tmp
RUN git clone https://github.com/tseemann/quicktree
WORKDIR quicktree
RUN make &&\
- ln -s /tmp/quicktree/quicktree /usr/local/bin
\ No newline at end of file
+ ln -s /tmp/quicktree/quicktree /usr/local/bin
diff --git a/for_build/barrnap_only/Dockerfile b/for_build/barrnap_only/Dockerfile
index 125659e6..becaf686 100644
--- a/for_build/barrnap_only/Dockerfile
+++ b/for_build/barrnap_only/Dockerfile
@@ -24,3 +24,5 @@ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
tar -xf 0.8.tar.gz &&\
rm 0.8.tar.gz
RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
+
+RUN rm /usr/bin/mafft # remove mafft installed with bioperl
\ No newline at end of file
diff --git a/for_build/basics/Dockerfile b/for_build/basics/Dockerfile
index dd9fda16..bed4a7fb 100644
--- a/for_build/basics/Dockerfile
+++ b/for_build/basics/Dockerfile
@@ -17,3 +17,5 @@ RUN apt-get install -y \
# Update pip
RUN pip3 install --upgrade pip
+
+RUN rm /usr/bin/mafft # remove mafft installed with bioperl
\ No newline at end of file
diff --git a/for_build/prokka_only/Dockerfile b/for_build/prokka_only/Dockerfile
index 54a54a40..47c01cd4 100644
--- a/for_build/prokka_only/Dockerfile
+++ b/for_build/prokka_only/Dockerfile
@@ -24,3 +24,5 @@ RUN apt-get install -y\
RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
+
+RUN rm /usr/bin/mafft # remove mafft installed with bioperl
--
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