diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 70002fe58d910c8b4da0a23af00fa90ef75889d0..ea5101da3eeab4ea0f71d11867fef139fe6808d7 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -39,32 +39,32 @@ before_script: # - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree # - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" -# build-ubuntu: +build-ubuntu: + only: + - docker + stage: build + script: + - apk update ; apk add git + - git checkout master -- requirements.txt + - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu" for_build/ubuntu + - docker push "$CI_REGISTRY_IMAGE/install-ubuntu" + +# build-mafft: # only: # - docker # stage: build # script: # - apk update ; apk add git # - git checkout master -- requirements.txt -# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu" for_build/ubuntu -# - docker push "$CI_REGISTRY_IMAGE/install-ubuntu" +# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mafft" for_build/mafft +# - docker push "$CI_REGISTRY_IMAGE/install-mafft" -# build-mafft: +# build-mmseqs_and_fastme: # only: # - docker # stage: build # script: # - apk update ; apk add git # - git checkout master -- requirements.txt -# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mafft" for_build/mafft -# - docker push "$CI_REGISTRY_IMAGE/install-mafft" - -build-mmseqs_and_fastme: - only: - - docker - stage: build - script: - - apk update ; apk add git - - git checkout master -- requirements.txt - - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" for_build/mmseqs_and_fastme - - docker push "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" +# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" for_build/mmseqs_and_fastme +# - docker push "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" diff --git a/for_build/ubuntu/Dockerfile b/for_build/ubuntu/Dockerfile index 18dcb47d9034aa7b3214334b0666b310047d0d10..7ca430eeb67a73871bc2821fd90c2e022ed4ef63 100644 --- a/for_build/ubuntu/Dockerfile +++ b/for_build/ubuntu/Dockerfile @@ -9,3 +9,5 @@ RUN apt-get install -y \ python3 \ python3-pip \ git + +RUN pip3 install --upgrade pip