From 9381845a1b851a60c64a33a2616ef6b6fd98f2f3 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Wed, 10 May 2017 15:27:34 +0200
Subject: [PATCH] Install bioperl in docker for install
---
for_build/barrnap_only/Dockerfile | 3 ++-
for_build/basics/Dockerfile | 4 +++-
2 files changed, 5 insertions(+), 2 deletions(-)
diff --git a/for_build/barrnap_only/Dockerfile b/for_build/barrnap_only/Dockerfile
index 1ffaa9ac..4b0a05b2 100644
--- a/for_build/barrnap_only/Dockerfile
+++ b/for_build/barrnap_only/Dockerfile
@@ -11,7 +11,8 @@ RUN apt-get install -y \
libdatetime-perl \
libxml-simple-perl \
libdigest-md5-perl \
- git
+ git \
+ bioperl
# Update pip
RUN pip3 install --upgrade pip
diff --git a/for_build/basics/Dockerfile b/for_build/basics/Dockerfile
index dadf27dd..dd9fda16 100644
--- a/for_build/basics/Dockerfile
+++ b/for_build/basics/Dockerfile
@@ -11,7 +11,9 @@ RUN apt-get install -y \
libxml-simple-perl \
libdigest-md5-perl \
git \
- python3-pip
+ python3-pip \
+ default-jre \
+ bioperl
# Update pip
RUN pip3 install --upgrade pip
--
GitLab