From a5402006028f88fd8541f1899fb7b95f13242336 Mon Sep 17 00:00:00 2001
From: asetGem <amandine.perrin@pasteur.fr>
Date: Tue, 15 Jun 2021 12:38:25 +0200
Subject: [PATCH] change command example align step

---
 Examples/commands/5-Align.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Examples/commands/5-Align.sh b/Examples/commands/5-Align.sh
index ea710648..69c7886d 100644
--- a/Examples/commands/5-Align.sh
+++ b/Examples/commands/5-Align.sh
@@ -2,4 +2,4 @@
 PanACoTA align -c Examples/4-corepers/PersGenome_PanGenome-GENO3.All.prt-clust-0.8-mode1.lst-all_1.lst -l Examples/2-res-prokka/LSTINFO-list_genomes.lst -n GENO3_1 -d Examples/2-res-prokka -o Examples/5-align
 
 # only run align step of example
-PanACoTA align -c Examples/input_files/align-input/coregenome-example.lst -l Examples/input_files/pan-input/LSTINFO-list_genomes.lst -n GENO3_1 -d Examples/input_files/pan-input -o Examples/5-align
\ No newline at end of file
+PanACoTA align -c Examples/input_files/align-input/coregenome-example.lst -l Examples/input_files/pan-input/LSTINFO-list_genomes.lst -n GENO3_1 -d Examples/input_files/pan-input -o Examples/5-align-alone
-- 
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