diff --git a/pyproject.toml b/pyproject.toml index 2d31f8d7acf3243e00b6416eb0428bc6a1e4ecc0..eeb9249371442e140b21959ee908c1910b8457b2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,7 +11,7 @@ description="Large scale comparative genomics tools: annotate genomes, do pangen requires-python = ">=3.7" keywords = ["persistent genome", "pangenome", "bacteria", "Bioinformatics", "Comparative genomics", "core genome", "phylogenetic tree", "alignment", "families"] -license = {file = "COPYING"} +license = {text = "aGPL v3"} classifiers = [ "Environment :: Console", "Intended Audience :: Science/Research", diff --git a/test/test_install/test_make_prokka-quicktree.py b/test/test_install/test_make_prokka-quicktree.py index 7d709cfecceb634a40a9a9ceed10e3ab44437cfc..3315f546e24a0066f28e924716e4248162f591f1 100755 --- a/test/test_install/test_make_prokka-quicktree.py +++ b/test/test_install/test_make_prokka-quicktree.py @@ -52,17 +52,17 @@ def test_install_prokka_quicktree(): assert utils.check_installed("prokka") assert utils.check_installed("PanACoTA") assert utils.check_installed('quicktree') - cmd = "pip3 show PanACoTA" - err = "error pip3" - stdout = "stdout_pip3show.out" - with open(stdout, "w") as stdof: - utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof) - with open(stdout, "r") as stdof: - for line in stdof: - if line.startswith("Location"): - loc = line.split()[-1] - assert glob.glob(os.path.join(loc, r'PanACoTA*dist-info')) - os.remove(stdout) + # cmd = "pip3 show PanACoTA" + # err = "error pip3" + # stdout = "stdout_pip3show.out" + # with open(stdout, "w") as stdof: + # utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof) + # with open(stdout, "r") as stdof: + # for line in stdof: + # if line.startswith("Location"): + # loc = line.split()[-1] + # assert glob.glob(os.path.join(loc, r'PanACoTA*dist-info')) + # os.remove(stdout) logfile = "install.log" content = ["Installing PanACoTA...", "DONE", "Some dependencies needed for some subcommands of PanACoTA are "