From abacfbd5b768df26d6bbbfd098ded6174df5d929 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Thu, 7 Sep 2023 12:29:32 +0200
Subject: [PATCH] Remove check pip show
---
pyproject.toml | 2 +-
.../test_make_prokka-quicktree.py | 22 +++++++++----------
2 files changed, 12 insertions(+), 12 deletions(-)
diff --git a/pyproject.toml b/pyproject.toml
index 2d31f8d..eeb9249 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -11,7 +11,7 @@ description="Large scale comparative genomics tools: annotate genomes, do pangen
requires-python = ">=3.7"
keywords = ["persistent genome", "pangenome", "bacteria", "Bioinformatics", "Comparative genomics",
"core genome", "phylogenetic tree", "alignment", "families"]
-license = {file = "COPYING"}
+license = {text = "aGPL v3"}
classifiers = [
"Environment :: Console",
"Intended Audience :: Science/Research",
diff --git a/test/test_install/test_make_prokka-quicktree.py b/test/test_install/test_make_prokka-quicktree.py
index 7d709cf..3315f54 100755
--- a/test/test_install/test_make_prokka-quicktree.py
+++ b/test/test_install/test_make_prokka-quicktree.py
@@ -52,17 +52,17 @@ def test_install_prokka_quicktree():
assert utils.check_installed("prokka")
assert utils.check_installed("PanACoTA")
assert utils.check_installed('quicktree')
- cmd = "pip3 show PanACoTA"
- err = "error pip3"
- stdout = "stdout_pip3show.out"
- with open(stdout, "w") as stdof:
- utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
- with open(stdout, "r") as stdof:
- for line in stdof:
- if line.startswith("Location"):
- loc = line.split()[-1]
- assert glob.glob(os.path.join(loc, r'PanACoTA*dist-info'))
- os.remove(stdout)
+ # cmd = "pip3 show PanACoTA"
+ # err = "error pip3"
+ # stdout = "stdout_pip3show.out"
+ # with open(stdout, "w") as stdof:
+ # utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
+ # with open(stdout, "r") as stdof:
+ # for line in stdof:
+ # if line.startswith("Location"):
+ # loc = line.split()[-1]
+ # assert glob.glob(os.path.join(loc, r'PanACoTA*dist-info'))
+ # os.remove(stdout)
logfile = "install.log"
content = ["Installing PanACoTA...", "DONE",
"Some dependencies needed for some subcommands of PanACoTA are "
--
GitLab