From b7e946618a064b1b57498ac87f65a525f407e195 Mon Sep 17 00:00:00 2001
From: asetGem <amandine.perrin@pasteur.fr>
Date: Fri, 30 Jul 2021 15:28:49 +0200
Subject: [PATCH] add strain option to prepare module in doc

---
 doc/source/usage.rst | 1 +
 1 file changed, 1 insertion(+)

diff --git a/doc/source/usage.rst b/doc/source/usage.rst
index 5c5ae0e1..8463f60a 100755
--- a/doc/source/usage.rst
+++ b/doc/source/usage.rst
@@ -211,6 +211,7 @@ Give at least one of ``-T``, ``-t`` or ``-g`` parameters (one of them is enough)
 - ``-g <NCBI species>``: the name of the species, as written by the NCBI. Give name between quotes.
 - ``-T <NCBI species taxid>``: the taxid provided by the NCBI for the species you want to download
 - ``-t <NCBI taxid>``: the taxid provided by the NCBI for the subspecies or specific strain you want to download
+- ``-S <NCBI_strain>``: specific strain name you want to download. A comma-separated list of strain names is possible, as well as a file with 1 line per strain.
 
 If you want to download all genomes in genbank, and not only the ones in refseq, use option ``-s genbank`` (default is ``-s refseq``).
 
-- 
GitLab