From c1cbeb5778de81f644105b361615a23941429ee3 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Thu, 30 Jan 2020 09:43:36 +0100
Subject: [PATCH] try to update blastp for prokka
---
.gitlab-ci.yml | 1 +
for_tests/Dockerfile | 2 +-
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 7031d7cb..ee6a60c4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -19,6 +19,7 @@ build-test-image:
# - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
- docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
+ - blastp --version
tags:
- k8s
diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile
index 57825443..ee3e39bb 100644
--- a/for_tests/Dockerfile
+++ b/for_tests/Dockerfile
@@ -81,7 +81,7 @@ WORKDIR /tmp
RUN wget http://www.microbesonline.org/fasttree/FastTree.c &&\
gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP FastTree.c -lm &&\
ln -s /tmp/FastTreeMP /usr/local/bin
-
+
## Install FastME FastME 2.1.6.1
WORKDIR /tmp
RUN apt-get install -y automake &&\
--
GitLab