diff --git a/PanACoTA/subcommands/annotate.py b/PanACoTA/subcommands/annotate.py index c8b7fde2a9a37e4d949c81645139a9a3087fef6b..7ea3801283b7ac9d4e125c0b3172ead4e3c38b7a 100755 --- a/PanACoTA/subcommands/annotate.py +++ b/PanACoTA/subcommands/annotate.py @@ -408,8 +408,7 @@ def main(cmd, list_file, db_path, res_dir, name, date, l90=100, nbcont=999, cutn skipped_format = [] # Generate database (folders Proteins, Genes, Replicons, LSTINFO) skipped_format = ffunc.format_genomes(results_ok, res_dir, res_annot_dir, - prodigal_only, threads, quiet=quiet, - changed_name=changed) + prodigal_only, threads, quiet=quiet) print(skipped_format) # At least one genome could not be formatted -> warn user if skipped_format: