From c50131db7456e466b79f5222c3d1e7b3f82a1f0a Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Wed, 7 Oct 2020 17:07:31 +0200
Subject: [PATCH] Fix functional tests for annotate module
---
PanACoTA/subcommands/annotate.py | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/PanACoTA/subcommands/annotate.py b/PanACoTA/subcommands/annotate.py
index c8b7fde2..7ea38012 100755
--- a/PanACoTA/subcommands/annotate.py
+++ b/PanACoTA/subcommands/annotate.py
@@ -408,8 +408,7 @@ def main(cmd, list_file, db_path, res_dir, name, date, l90=100, nbcont=999, cutn
skipped_format = []
# Generate database (folders Proteins, Genes, Replicons, LSTINFO)
skipped_format = ffunc.format_genomes(results_ok, res_dir, res_annot_dir,
- prodigal_only, threads, quiet=quiet,
- changed_name=changed)
+ prodigal_only, threads, quiet=quiet)
print(skipped_format)
# At least one genome could not be formatted -> warn user
if skipped_format:
--
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