From c6b09d70d204c0dd8fe508ba2f293329636a817c Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Tue, 5 Nov 2019 10:06:02 +0100
Subject: [PATCH] Docstring in utils module
---
PanACoTA/utils.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/PanACoTA/utils.py b/PanACoTA/utils.py
index fd13cca8..de8118c8 100755
--- a/PanACoTA/utils.py
+++ b/PanACoTA/utils.py
@@ -893,7 +893,7 @@ def cat(list_files, output, title=None):
"""
Equivalent of 'cat' unix command.
- Concatenate all files in 'list_files' and save result in 'output'
+ Concatenate all files in 'list_files' and save result in 'output' folder.
Concat using shutil.copyfileobj, in order to copy by chunks, to
avoid memory problems if files are big.
@@ -904,7 +904,7 @@ def cat(list_files, output, title=None):
output : str
output filename, where all concatenated files will be written
title : str or None
- if you want to show a progressbar while concatenating files, add a title for this\
+ if you want to show a progressbar while concatenating files, add a title for this
progressbar here. If no title, nothing will be shown during concatenation.
"""
@@ -913,7 +913,7 @@ def cat(list_files, output, title=None):
if title:
nbfiles = len(list_files)
widgets = [title + ': ', progressbar.Bar(marker='â–ˆ', left='', right='', fill=' '),
- ' ', progressbar.Counter(), "/{}".format(nbfiles), ' (',
+ ' ', progressbar.Counter(), f"/{nbfiles}" ' (',
progressbar.Percentage(), ") - ", progressbar.Timer()]
bar = progressbar.ProgressBar(widgets=widgets, max_value=nbfiles, term_width=100).start()
curnum = 1
--
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