diff --git a/for_build/annote_and_1tree/Dockerfile b/for_build/annote_and_1tree/Dockerfile index a062bb445880aaf8c5374c7810b4c8e177fa4c03..f2ddbf0454026ba2193c9f91b8a8ce1df0bf8c05 100644 --- a/for_build/annote_and_1tree/Dockerfile +++ b/for_build/annote_and_1tree/Dockerfile @@ -1,27 +1,26 @@ -from ubuntu:latest +from ubuntu:18.04 # Update apt-get packages RUN apt-get update &&\ apt-get -y upgrade -# Install package needed + +# Install packages needed and update pip RUN apt-get install -y \ - python3\ - git \ wget \ + python3 \ python3-pip - - # Upgrade pip RUN pip3 install --upgrade pip -# Update makeblastdb for prokka +# Update makeblastdb and blastp for prokka WORKDIR /tmp -RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz &&\ - tar zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz &&\ - cp /tmp/ncbi-blast-2.9.0+/bin/makeblastdb /usr/local/bin/ &&\ - rm ncbi-blast-2.9.0+-x64-linux.tar.gz +RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.0+-x64-linux.tar.gz &&\ + tar zxvpf ncbi-blast-2.10.0+-x64-linux.tar.gz &&\ + cp /tmp/ncbi-blast-2.10.0+/bin/makeblastdb /usr/local/bin/ &&\ + cp /tmp/ncbi-blast-2.10.0+/bin/blastp /usr/local/bin/ &&\ + rm ncbi-blast-2.10.0+-x64-linux.tar.gz # Install prokka: diff --git a/for_build/barrnap_only/Dockerfile b/for_build/barrnap_only/Dockerfile index 5ddd5e61fb8670c7cb05df0730e99e48521f644d..bedd3541364f034eea6ccb95c0ce0352a83e0958 100644 --- a/for_build/barrnap_only/Dockerfile +++ b/for_build/barrnap_only/Dockerfile @@ -1,4 +1,4 @@ -from ubuntu:latest +from ubuntu:18.04 # Update apt-get packages RUN apt-get update &&\ diff --git a/for_build/mafft/Dockerfile b/for_build/mafft/Dockerfile index 5270a5f954798d45337d5a4259b1746514f93cb1..b704424253098b713afb435de46ad7383e2590b7 100644 --- a/for_build/mafft/Dockerfile +++ b/for_build/mafft/Dockerfile @@ -1,4 +1,4 @@ -from ubuntu:latest +from ubuntu:18.04 # Update apt-get packages RUN apt-get update &&\ diff --git a/for_build/ubuntu/Dockerfile b/for_build/ubuntu/Dockerfile index 7ca430eeb67a73871bc2821fd90c2e022ed4ef63..47efcbda77e16e4c6fdc2a71ee5ebea0a30da2e6 100644 --- a/for_build/ubuntu/Dockerfile +++ b/for_build/ubuntu/Dockerfile @@ -1,4 +1,4 @@ -from ubuntu:latest +from ubuntu:18.04 # Update apt-get packages RUN apt-get update &&\ diff --git a/for_tests/Dockerfile b/for_tests/Dockerfile index c5d182c2f1b519a5defa2d56ecfe596fa6cf1358..419bc3b302e5d6e0a173f940a7d0e7ffc0a92697 100644 --- a/for_tests/Dockerfile +++ b/for_tests/Dockerfile @@ -10,6 +10,7 @@ RUN apt-get install -y \ wget \ python3 \ python3-pip +# Upgrade pip RUN pip3 install --upgrade pip