diff --git a/PanACoTA/pangenome_module/mmseqs_functions.py b/PanACoTA/pangenome_module/mmseqs_functions.py index af42e1aad27d91f4012f39498071e6ea054173db..ac93d92ea846713504c96bb1386c6c132429eb0a 100755 --- a/PanACoTA/pangenome_module/mmseqs_functions.py +++ b/PanACoTA/pangenome_module/mmseqs_functions.py @@ -417,8 +417,8 @@ def create_mmseqs_db(mmseqdb, prt_path, logmmseq): return 0 if len(files_existing) != len(outext): logger.info("Creating database") - logger.details("Existing files: {}".format(len(files_existing))) - logger.details("Expected extensions: {}".format(len(outext))) + logger.debug("Existing files: {}".format(len(files_existing))) + logger.debug("Expected extensions: {}".format(len(outext))) cmd = f"mmseqs createdb {prt_path} {mmseqdb}" msg = (f"Problem while trying to convert database {prt_path} to mmseqs " "database format.") diff --git a/PanACoTA/utils.py b/PanACoTA/utils.py index 11a099d23451a04592daface2e40f68bdbe49b98..4d9f3a09bfa69abb703b7b1c083b6e8d292d7b3e 100755 --- a/PanACoTA/utils.py +++ b/PanACoTA/utils.py @@ -341,7 +341,7 @@ def run_cmd(cmd, error, eof=False, **kwargs): call.wait() retcode = call.returncode except OSError: - logger.error(f"error: {cmd} does not exist") + logger.error(f"error: command {cmd} is not possible.") if eof: sys.exit(1) else: