From c9b9337aa8d53de828c5e707165431a8592f87b3 Mon Sep 17 00:00:00 2001
From: Amandine PERRIN <amandine.perrin@pasteur.fr>
Date: Fri, 29 Jan 2021 09:36:50 +0100
Subject: [PATCH] modify error message when cmd fails

---
 PanACoTA/pangenome_module/mmseqs_functions.py | 4 ++--
 PanACoTA/utils.py                             | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/PanACoTA/pangenome_module/mmseqs_functions.py b/PanACoTA/pangenome_module/mmseqs_functions.py
index af42e1aa..ac93d92e 100755
--- a/PanACoTA/pangenome_module/mmseqs_functions.py
+++ b/PanACoTA/pangenome_module/mmseqs_functions.py
@@ -417,8 +417,8 @@ def create_mmseqs_db(mmseqdb, prt_path, logmmseq):
             return 0
     if len(files_existing) != len(outext):
         logger.info("Creating database")
-        logger.details("Existing files: {}".format(len(files_existing)))
-        logger.details("Expected extensions: {}".format(len(outext)))
+        logger.debug("Existing files: {}".format(len(files_existing)))
+        logger.debug("Expected extensions: {}".format(len(outext)))
         cmd = f"mmseqs createdb {prt_path} {mmseqdb}"
         msg = (f"Problem while trying to convert database {prt_path} to mmseqs "
                "database format.")
diff --git a/PanACoTA/utils.py b/PanACoTA/utils.py
index 11a099d2..4d9f3a09 100755
--- a/PanACoTA/utils.py
+++ b/PanACoTA/utils.py
@@ -341,7 +341,7 @@ def run_cmd(cmd, error, eof=False, **kwargs):
         call.wait()
         retcode = call.returncode
     except OSError:
-        logger.error(f"error: {cmd} does not exist")
+        logger.error(f"error: command {cmd} is not possible.")
         if eof:
             sys.exit(1)
         else:
-- 
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