diff --git a/README.md b/README.md index 0db8a0c5a097287a3fccd101f293f771d90f38d0..94b1fc51309cc9ff12761a09eb5845cbfd9cdca4 100755 --- a/README.md +++ b/README.md @@ -1,7 +1,10 @@ # **PanACoTA** [](https://badge.fury.io/py/PanACoTA) [](https://github.com/gem-pasteur/PanACoTA/releases) + +<!-- [](https://singularity-hub.org/collections/4724) +--> [](https://doi.org/10.1101/2020.09.11.293472) @@ -126,21 +129,19 @@ To upload to new version, go back to your repository: ### <a name="singularity"></a> From singularity image -[](https://singularity-hub.org/collections/4724) - Very useful if you do not have permission rights on the computer, such as, for example, on a cluster. The other advantage is that you do not need to install any dependence (except singularity itself of course). Singularity image includes all of them. You just have to download 1 file, and nothing will be installed anywhere on your computer. First, download the singularity image: - singularity pull --name panacota.img shub://gem-pasteur/PanACoTA[:<version>] + singularity pull --name panacota.img docker://gempasteur/panacota[:<version>] -If you want a specific version, like version 1.0, specify `shub://gem-pasteur/PanACoTA:1.0`. +If you want a specific version, like version 1.0, specify `docker://gempasteur/panacota:1.0`. To get latest version: - singularity pull --name panacota.img shub://gem-pasteur/PanACoTA + singularity pull --name panacota.img docker://gempasteur/panacota -(This is the same as `singularity pull --name panacota.img shub://gem-pasteur/PanACoTA:latest`) +(This is the same as `singularity pull --name panacota.img docker://gempasteur/panacota:latest`) It will replace your file panacota.img by a new one corresponding to the latest version.