From d02ff28ec04c8932f282f2a237293b5a5d3e0fd8 Mon Sep 17 00:00:00 2001 From: Amandine PERRIN <amandine.perrin@pasteur.fr> Date: Thu, 29 Oct 2020 13:46:51 +0100 Subject: [PATCH] Add info for singularity run --- README.md | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 0db8a0c5..94b1fc51 100755 --- a/README.md +++ b/README.md @@ -1,7 +1,10 @@ # **PanACoTA** [](https://badge.fury.io/py/PanACoTA) [](https://github.com/gem-pasteur/PanACoTA/releases) + +<!-- [](https://singularity-hub.org/collections/4724) +--> [](https://doi.org/10.1101/2020.09.11.293472) @@ -126,21 +129,19 @@ To upload to new version, go back to your repository: ### <a name="singularity"></a> From singularity image -[](https://singularity-hub.org/collections/4724) - Very useful if you do not have permission rights on the computer, such as, for example, on a cluster. The other advantage is that you do not need to install any dependence (except singularity itself of course). Singularity image includes all of them. You just have to download 1 file, and nothing will be installed anywhere on your computer. First, download the singularity image: - singularity pull --name panacota.img shub://gem-pasteur/PanACoTA[:<version>] + singularity pull --name panacota.img docker://gempasteur/panacota[:<version>] -If you want a specific version, like version 1.0, specify `shub://gem-pasteur/PanACoTA:1.0`. +If you want a specific version, like version 1.0, specify `docker://gempasteur/panacota:1.0`. To get latest version: - singularity pull --name panacota.img shub://gem-pasteur/PanACoTA + singularity pull --name panacota.img docker://gempasteur/panacota -(This is the same as `singularity pull --name panacota.img shub://gem-pasteur/PanACoTA:latest`) +(This is the same as `singularity pull --name panacota.img docker://gempasteur/panacota:latest`) It will replace your file panacota.img by a new one corresponding to the latest version. -- GitLab